INFO 2025-06-26 16:39:22,152 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 16:39:22,152 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Inner-bay survey eigth - Lap around LatMix array - ctdToUse = ctd1 INFO 2025-06-26 16:39:22,153 process.py process_mission():449 [1] Processing AUVCTD mission 2010.287.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 16:39:22,153 process.py download_process():165 [1] Download and processing steps for 2010.287.00 INFO 2025-06-26 16:39:22,153 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010287/2010.287.00 INFO 2025-06-26 16:39:22,153 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010287/2010.287.00 to /data/auv_data/dorado/missionlogs/2010.287.00 INFO 2025-06-26 16:39:25,139 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.287.00 INFO 2025-06-26 16:39:25,139 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/ctdDriver.log (5296811 bytes) INFO 2025-06-26 16:39:25,502 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.287.00/ctdDriver.log: [ 316 329 358 451 558 1041 1121 1172 1461 1730 1995 2345 2753 4044 5998 6233 7175 7352 9331 9606 10021 12087 12433 13701 14186 15771 16941 19120 20472 23721 24059 24138 24413 30007 32391 35181 39643 42244 49782 53888] INFO 2025-06-26 16:39:25,517 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/ctdDriver2.log (5297279 bytes) INFO 2025-06-26 16:39:26,010 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.287.00/ctdDriver2.log: [ 86 291 315 328 450 557 662 942 1040 1171 1252 1445 1729 2505 2752 3048 3695 4043 5997 6232 7350 8738 10021 12088 12433 14187 15773 19121 20473 21788 23723 24061 24140 26122 30008 32393 35183 42245 53893 54483] INFO 2025-06-26 16:39:26,047 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/gps.log (90356 bytes) INFO 2025-06-26 16:39:26,067 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/hydroscatlog.log (4638754 bytes) INFO 2025-06-26 16:39:26,661 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.287.00/hydroscatlog.log: [ 148 151 198 375 1100 1436 1770 2655 2812 3092 3755 4141 4842 5651 7228 7231 9387 9453 11291 12030 12725 14382 16995 17446 18696 19174 19912 20524 21838 24112 26174 30388 31278 32150 32440 34393 34459 38338 40474 41078 41108 43004 45455 51435 53532 53931] INFO 2025-06-26 16:39:26,683 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/navigation.log (16215922 bytes) INFO 2025-06-26 16:39:28,045 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/isuslog.log (341717 bytes) INFO 2025-06-26 16:39:28,086 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/parosci.log (6048758 bytes) INFO 2025-06-26 16:39:28,679 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/tailCone.log (3304123 bytes) INFO 2025-06-26 16:39:29,135 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/biolume.log (3862822 bytes) INFO 2025-06-26 16:39:29,533 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 16:39:29,781 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.64 seconds INFO 2025-06-26 16:39:29,781 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.287.00/lopc.bin (25884000 bytes) INFO 2025-06-26 16:39:29,782 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 16:39:29 2025 INFO 2025-06-26 16:39:29,782 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.287.00/parosci.nc INFO 2025-06-26 16:39:29,782 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 16:39:29,782 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.287.00/parosci.nc INFO 2025-06-26 16:39:29,786 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1287079017.0, sensor_off_time = 1287092838.0 INFO 2025-06-26 16:39:29,786 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 13821 seconds. Expecting to read 27642 L frames from the lopc.bin file. INFO 2025-06-26 16:39:29,787 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 27642 records from the lopc.bin file. INFO 2025-06-26 16:39:29,953 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-10-14 17:56:56 Z and endTime = 2010-10-14 21:47:18 Z with 27642 records expected to be read from lopc.bin INFO 2025-06-26 16:39:29,953 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.287.00/lopc.bin INFO 2025-06-26 16:39:29,953 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.287.00/lopc.nc INFO 2025-06-26 16:39:29,953 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.287.00/lopc.nc INFO 2025-06-26 16:39:29,954 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.287.00 INFO 2025-06-26 16:39:29,954 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 16:39:29,992 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 16:39:29,992 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 16:39:29,992 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 16:39:42,231 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 30991 0 0 0 0 0 12.3 seconds, last L Frame: 27642 INFO 2025-06-26 16:39:52,689 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 57989 0 0 0 0 0 10.5 seconds, last L Frame: 27642 ERROR 2025-06-26 16:40:00,440 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x88 in position 0: invalid start byte INFO 2025-06-26 16:40:00,440 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 16:40:00,440 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.287.00/parosci.nc INFO 2025-06-26 16:40:00,440 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 16:40:00,440 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.287.00/parosci.nc INFO 2025-06-26 16:40:00,444 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1287079017.0, sensor_off_time = 1287092838.0 INFO 2025-06-26 16:40:00,444 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 13821 seconds. Expecting to read 27642 L frames from the lopc.bin file. INFO 2025-06-26 16:40:00,445 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 27642 records from the lopc.bin file. INFO 2025-06-26 16:40:00,445 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 24546 INFO 2025-06-26 16:40:00,447 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 16:40:00,447 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 24548 24549 24550] INFO 2025-06-26 16:40:00,447 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 16:40:00,447 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 24548 24549 24550] INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 24548 24549 24550] with len(correctedSampleCountList) = 24546 INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 16:40:00,448 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 16:40:00,449 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.22735e+04 1.22740e+04 1.22745e+04] INFO 2025-06-26 16:40:00,449 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.28707902e+09 1.28707902e+09 1.28707902e+09 ... 1.28709129e+09 1.28709129e+09 1.28709129e+09] INFO 2025-06-26 16:40:00,449 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1287079017.0 1287079017.5, ..., timestampArray[-2:] = 1287091291.0 1287091291.5] INFO 2025-06-26 16:40:00,474 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1287079016.954187), np.float64(1287079017.454187)], ..., timestampList[-2:] = [np.float64(1287091290.954187), np.float64(1287091291.454187)]] INFO 2025-06-26 16:40:00,474 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 24546) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 16:40:00,474 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [24506, 24527] INFO 2025-06-26 16:40:00,475 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 1168 INFO 2025-06-26 16:40:00,475 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 24546 INFO 2025-06-26 16:40:00,475 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1287079016.954187), np.float64(1287079017.454187)], ..., timestampList[-2:] = [np.float64(1287091290.954187), np.float64(1287091291.454187)]] INFO 2025-06-26 16:40:00,475 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 24546) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 16:40:00,475 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(24505), np.int32(24526)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 16:40:00,476 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 1168 INFO 2025-06-26 16:40:00,476 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 1168 INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1287079026.454187)], ..., tsList[-2:] = [np.float64(1287091271.454187), np.float64(1287091281.954187)] INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-10-14 17:57:06 Z INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-10-14 21:21:21 Z INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1168 INFO 2025-06-26 16:40:00,495 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.28707903e+09], ..., cFrameEsecsList[-2:] = [1.28709127e+09 1.28709129e+09] INFO 2025-06-26 16:40:00,496 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-10-14 17:57:07 Z INFO 2025-06-26 16:40:00,496 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-10-14 21:21:25 Z INFO 2025-06-26 16:40:00,500 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.287.00/lopc.nc INFO 2025-06-26 16:40:00,500 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 16:40:00 2025 Elapsed processing time from start of processing = 30 seconds INFO 2025-06-26 16:40:00,501 process.py calibrate():227 [1] Calibration steps for 2010.287.00 INFO 2025-06-26 16:40:00,662 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 16:40:00,665 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 16:40:01,530 calibrate.py _nudge_pos():1806 [1] 127: 0.010 0.0001143 -0.0001249 1080 3.66 4.624 -6.319 2010-10-14T18:02:41.070613504 INFO 2025-06-26 16:40:02,214 calibrate.py _nudge_pos():1806 [1] 199: 0.020 0.0017407 -0.0007071 6209 20.81 12.389 -6.295 2010-10-14T18:24:41.070187008 INFO 2025-06-26 16:40:02,913 calibrate.py _nudge_pos():1806 [1] 272: 0.020 -0.0004332 -0.0001292 2032 6.80 -9.442 -3.522 2010-10-14T18:32:41.067305216 INFO 2025-06-26 16:40:03,605 calibrate.py _nudge_pos():1806 [1] 346: 0.020 -0.0026334 -0.0057477 7804 26.08 -14.956 -40.838 2010-10-14T18:59:59.065094400 INFO 2025-06-26 16:40:04,289 calibrate.py _nudge_pos():1806 [1] 417: 0.030 -0.0037587 -0.0044433 7768 25.93 -21.468 -31.753 2010-10-14T19:27:05.063705856 INFO 2025-06-26 16:40:05,669 calibrate.py _nudge_pos():1806 [1] 563: 0.020 -0.0003991 -0.0000914 3261 10.88 -5.431 -1.557 2010-10-14T19:40:23.069038848 INFO 2025-06-26 16:40:06,297 calibrate.py _nudge_pos():1806 [1] 630: 0.030 0.0058363 -0.0010851 8028 26.80 32.261 -7.503 2010-10-14T20:08:17.064362240 INFO 2025-06-26 16:40:06,910 calibrate.py _nudge_pos():1806 [1] 695: 0.030 0.0001625 -0.0012610 3067 10.23 2.353 -22.841 2010-10-14T20:19:35.067916032 INFO 2025-06-26 16:40:07,679 calibrate.py _nudge_pos():1806 [1] 775: 0.040 -0.0009359 -0.0018138 7965 26.58 -5.216 -12.645 2010-10-14T20:47:29.063239424 INFO 2025-06-26 16:40:08,070 calibrate.py _nudge_pos():1806 [1] 815: 0.030 0.0000422 -0.0000349 128 0.43 14.540 -15.024 2010-10-14T20:48:34.068786176 INFO 2025-06-26 16:40:08,215 calibrate.py _nudge_pos():1806 [1] 830: 0.030 -0.0007201 -0.0019428 7935 26.48 -4.029 -13.595 2010-10-14T21:15:17.068973056 INFO 2025-06-26 16:40:08,933 calibrate.py _nudge_pos():1806 [1] 906: 0.030 -0.0009436 -0.0019408 7531 25.13 -5.563 -14.311 2010-10-14T21:41:41.070461696 INFO 2025-06-26 16:40:12,162 calibrate.py _nudge_pos():1862 [1] 1193: - - - 4 0.01 - - INFO 2025-06-26 16:40:12,162 calibrate.py _nudge_pos():1868 [1] Points in final series = 68703 WARNING 2025-06-26 16:40:12,261 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 16:40:19,614 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:40:23,633 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:40:24,045 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:40:24,047 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.287.00/ctd1.nc INFO 2025-06-26 16:40:24,048 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 16:40:24,049 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:40:24,049 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 16:40:27,173 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:40:27,593 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:40:27,595 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.287.00/ctd2.nc INFO 2025-06-26 16:40:27,596 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 16:40:27,596 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:40:27,597 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 16:40:27,622 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 16:40:28,301 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 300 480 481 482 483 484 485 486 487 488 540 541 542 543 544 545 546 547 548 549 660 661 662 663 664 665 666 667 668 669 670 671 672 1800 1801 1802 1803 1804 1805 1806 1807 1808 1809 1810 1811 1812 1813 1814 1815 1816 1817 1818 3000 3001 3002 3003 3004 3005 3006 3007 3008 3009 3010 3011 3012 3060 3061 3062 3063 3064 3065 3066 3067 3068 8280 8281 8282 8283 8284 8285 9960 9961 9962 10140 11520 11880 11881 11882 11883 11884 11885 11886 11887 11888 11889 11890 11891 11892 12720 12721 12722 12723 12724 12725 12726 12727 12728 15300 15301 15302 15303 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Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 16:40:47,455 process.py align():251 [1] Alignment steps for 2010.287.00 INFO 2025-06-26 16:40:47,494 align.py process_cal():139 [1] Processing dorado_2010.287.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.287.00 INFO 2025-06-26 16:40:47,516 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:40:47,520 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:40:47,570 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:40:47,574 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:40:47,624 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:40:47,629 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:40:47,658 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 16:40:47,658 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 16:40:47,678 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:40:47,682 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:40:47,731 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,735 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:40:47,779 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,783 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:40:47,828 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,832 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:40:47,875 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,879 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:47,925 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,929 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:47,972 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:47,976 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,021 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,024 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,068 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,072 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,117 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,120 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,164 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,168 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,212 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,216 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,259 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,263 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,307 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,311 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,355 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,358 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,405 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,409 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,453 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,457 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,502 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,506 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,550 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,554 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,599 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,604 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,648 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,652 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,698 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,702 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,747 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.287.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:40:48,751 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:40:48,805 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:40:48,845 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:40:48,885 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:40:48,927 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 16:40:48,969 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 16:40:49,032 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.95 INFO 2025-06-26 16:40:49,389 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 16:40:49,426 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 16:40:49,462 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 16:40:49,497 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 16:40:49,533 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 16:40:49,572 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 16:40:49,609 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_align.nc INFO 2025-06-26 16:40:49,738 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 16:40:49,741 process.py resample():273 [1] Resampling steps for 2010.287.00 INFO 2025-06-26 16:40:49,742 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 16:40:49,777 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_align.nc mission netCDF file INFO 2025-06-26 16:40:49,783 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_align.nc mission netCDF file INFO 2025-06-26 16:40:49,784 resample.py get_mission_start_end():1145 [1] navigation: 2010-10-14T17:57:45.700847360 to 2010-10-14T21:47:17.867389440 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 16:40:49,786 resample.py get_mission_start_end():1145 [1] hs2 : 2010-10-14T17:57:05.883575296 to 2010-10-14T21:47:18.007379712 (0 days 00:00:00 before mission_end) INFO 2025-06-26 16:40:49,788 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-10-14T17:57:23.262384640 to 2010-10-14T21:47:17.957383424 (0 days 00:00:00.049996288 before mission_end) INFO 2025-06-26 16:40:49,789 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-10-14T17:57:23.812346880 to 2010-10-14T21:47:17.997380608 (0 days 00:00:00.009999104 before mission_end) INFO 2025-06-26 16:40:49,791 resample.py get_mission_start_end():1145 [1] isus : 2010-10-14T17:58:12.878985728 to 2010-10-14T21:47:17.447418112 (0 days 00:00:00.559961600 before mission_end) INFO 2025-06-26 16:40:49,792 resample.py get_mission_start_end():1145 [1] biolume : 2010-10-14T17:56:55.904224512 to 2010-10-14T21:47:16.547445504 (0 days 00:00:01.459934208 before mission_end) INFO 2025-06-26 16:40:49,794 resample.py get_mission_start_end():1145 [1] lopc : 2010-10-14T17:57:06.454187008 to 2010-10-14T21:21:21.954187008 (0 days 00:25:56.053192704 before mission_end) WARNING 2025-06-26 16:40:49,795 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 00:25:56.053192704 INFO 2025-06-26 16:40:49,796 resample.py get_mission_start_end():1145 [1] tailcone : 2010-10-14T17:57:00.463946240 to 2010-10-14T21:47:17.917385984 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 16:40:49,797 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_align.nc mission netCDF file INFO 2025-06-26 16:40:49,797 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:49,958 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:49,987 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,022 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,051 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,077 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,104 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,129 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,153 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,176 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,199 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,221 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,244 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,266 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,289 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,314 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,338 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,361 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,386 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,411 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,436 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,460 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,484 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,509 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,533 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,548 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,561 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,574 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,585 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,596 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:50,601 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 16:40:50,601 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 16:40:51,125 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 16:40:51,229 resample.py add_biolume_proxies():633 [1] Zero flow values found: 13822 of 13822 - replaced with 350 ml/s INFO 2025-06-26 16:40:51,229 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 16:40:51,283 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 16:40:51,305 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 16:40:51,325 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 16:40:51,325 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 16:40:51,344 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,344 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 00:25:56.053192704 of NaNs to the end of mission INFO 2025-06-26 16:40:51,355 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,355 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 00:25:56.053192704 of NaNs to the end of mission INFO 2025-06-26 16:40:51,365 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,365 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 00:25:56.053192704 of NaNs to the end of mission INFO 2025-06-26 16:40:51,375 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,375 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 00:25:56.053192704 of NaNs to the end of mission INFO 2025-06-26 16:40:51,385 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,385 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 00:25:56.053192704 of NaNs to the end of mission INFO 2025-06-26 16:40:51,415 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 16:40:51,619 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_1S.nc INFO 2025-06-26 16:40:53,858 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 16:40:54,959 create_products.py gulper_odv():522 [1] Wrote 1 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.287.00/dorado_2010.287.00_1S_Gulper.txt INFO 2025-06-26 16:40:54,960 process.py archive():337 [1] Archiving steps for 2010.287.00 INFO 2025-06-26 16:40:54,960 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00, BASE_PATH = /data/auv_data INFO 2025-06-26 16:40:54,961 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 16:40:54,962 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.287.00_1S.nc INFO 2025-06-26 16:40:54,981 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:40:54,981 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.287.00_cal.nc INFO 2025-06-26 16:40:55,082 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:40:55,083 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.287.00_align.nc INFO 2025-06-26 16:40:55,221 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:40:55,241 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,260 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,265 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,281 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,326 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,331 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,351 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,366 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,403 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,444 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010287/2010.287.00 done. INFO 2025-06-26 16:40:55,445 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 16:40:55,446 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.287.00_1S_Gulper.txt INFO 2025-06-26 16:40:55,450 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.287.00/dorado_2010.287.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 16:40:55,451 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.287.00/dorado_2010.287.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf