INFO 2025-06-26 16:07:47,035 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 16:07:47,035 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Inner-bay survey first one for BloomEx in October 2010 - Doug said there was a lot of stuff out there. It was trailing kelp when they picked it up. The first mission with the UBAT - ctdToUse = ctd2 INFO 2025-06-26 16:07:47,035 process.py process_mission():449 [1] Processing AUVCTD mission 2010.277.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 16:07:47,036 process.py download_process():165 [1] Download and processing steps for 2010.277.01 INFO 2025-06-26 16:07:47,036 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010277/2010.277.01 INFO 2025-06-26 16:07:47,036 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010277/2010.277.01 to /data/auv_data/dorado/missionlogs/2010.277.01 INFO 2025-06-26 16:07:54,519 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.277.01 INFO 2025-06-26 16:07:54,519 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/ctdDriver.log (21760235 bytes) INFO 2025-06-26 16:07:56,211 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.277.01/ctdDriver.log: [ 45 102 118 942 953 1012 1197 1335 2418 3689 4679 5676 10632 13643 16534 17003 20576 20901 21296 22071 25300 29643 30154 35752 35845 40112 45919 46639 47941 52901 53413 55783 56945 57621 59907 63145 63281 63450 65332 65405 69420 82203 83401 83662 91090 96277 101205 102992 107373 108021 124588 130681 134351 134722 138068 138438 139717 140298 150277 155552 156862 160447 166821 175803 188663 189392 193954 196605 197004 197071 198149 199167 203399 205861 205992 208809 208950 216190 217149 221235 226302] INFO 2025-06-26 16:07:56,306 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/ctdDriver2.log (21760127 bytes) INFO 2025-06-26 16:07:57,981 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.277.01/ctdDriver2.log: [ 547 862 941 1629 1677 3057 3688 8151 8348 10602 10631 13642 14606 17002 20900 22070 22935 25299 30923 35844 36591 41914 42559 46638 46999 47940 50834 52131 53412 55782 56944 57620 63280 63449 65331 65404 66439 67978 71049 72646 75091 79711 82202 82263 82991 83661 90894 96276 98294 101383 113386 119062 123135 124587 128378 130993 132818 138067 138437 143281 144321 146238 155657 157253 158830 166698 167560 169890 174674 175425 178960 181789 181841 188605 189391 190286 196016 197003 198148 203132 205860 210434 213318 213655 216445 217358] INFO 2025-06-26 16:07:58,098 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/gps.log (325652 bytes) INFO 2025-06-26 16:07:58,151 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/hydroscatlog.log (19035682 bytes) INFO 2025-06-26 16:08:00,226 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.277.01/hydroscatlog.log: [ 1 445 603 919 998 1253 1686 2905 3151 4441 4735 5065 5531 5733 6803 7105 8115 11375 11825 12220 12584 20951 22121 22465 22984 25348 28729 28760 30201 31374 36634 40153 46677 52168 55063 57019 60895 60906 61086 62735 63312 65363 71076 72673 79734 91107 93037 98309 108029 109715 110122 112944 120501 123731 125116 125936 128375 138430 140288 143619 160426 166673 167535 169598 174645 180896 183538 183764 184474 188034 188569 190250 191437 193915 195867 196564 198108 199124 203354 203697 205947 210387 217097 221181 224414] INFO 2025-06-26 16:08:00,322 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/navigation.log (66787418 bytes) INFO 2025-06-26 16:08:05,702 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/isuslog.log (1410453 bytes) INFO 2025-06-26 16:08:05,843 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.277.01/isuslog.log: [1 2 3 4 5 6 7 9] INFO 2025-06-26 16:08:05,849 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/parosci.log (24864854 bytes) INFO 2025-06-26 16:08:08,062 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/tailCone.log (13587115 bytes) INFO 2025-06-26 16:08:09,876 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/biolume.log (15831718 bytes) INFO 2025-06-26 16:08:11,455 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 16:08:12,237 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.72 seconds INFO 2025-06-26 16:08:12,237 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.277.01/lopc.bin (189060000 bytes) INFO 2025-06-26 16:08:12,237 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 16:08:12 2025 INFO 2025-06-26 16:08:12,237 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.277.01/parosci.nc INFO 2025-06-26 16:08:12,237 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 16:08:12,237 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.277.01/parosci.nc INFO 2025-06-26 16:08:12,241 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1286228940.1, sensor_off_time = 1286285624.7 INFO 2025-06-26 16:08:12,241 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 56684 seconds. Expecting to read 113368 L frames from the lopc.bin file. INFO 2025-06-26 16:08:12,241 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 113368 records from the lopc.bin file. INFO 2025-06-26 16:08:12,912 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-10-04 21:49:00 Z and endTime = 2010-10-05 13:33:44 Z with 113368 records expected to be read from lopc.bin INFO 2025-06-26 16:08:12,913 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.277.01/lopc.bin INFO 2025-06-26 16:08:12,913 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.277.01/lopc.nc INFO 2025-06-26 16:08:12,913 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.277.01/lopc.nc INFO 2025-06-26 16:08:12,914 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.277.01 INFO 2025-06-26 16:08:12,914 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-06-26 16:08:12,918 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 16:08:12,920 process.py calibrate():227 [1] Calibration steps for 2010.277.01 INFO 2025-06-26 16:08:13,416 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 16:08:13,419 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 16:08:14,391 calibrate.py _nudge_pos():1806 [1] 133: 0.130 -0.0000190 -0.0000346 15 0.05 -60.500 -137.461 2010-10-04T21:51:12.806518784 INFO 2025-06-26 16:08:14,474 calibrate.py _nudge_pos():1806 [1] 141: 0.120 -0.0000070 -0.0000154 20 0.06 -16.311 -44.915 2010-10-04T21:51:23.805765376 INFO 2025-06-26 16:08:14,649 calibrate.py _nudge_pos():1806 [1] 158: 0.120 0.0000057 -0.0001260 633 2.11 0.397 -11.051 2010-10-04T21:53:46.805969152 INFO 2025-06-26 16:08:15,439 calibrate.py _nudge_pos():1806 [1] 234: 0.130 0.0029620 -0.0050908 9080 30.35 14.475 -31.085 2010-10-04T22:25:22.806084096 INFO 2025-06-26 16:08:15,716 calibrate.py _nudge_pos():1806 [1] 261: 0.130 -0.0000171 0.0000133 15 0.05 -54.336 52.893 2010-10-04T22:25:51.804097536 INFO 2025-06-26 16:08:15,954 calibrate.py _nudge_pos():1806 [1] 284: 0.130 -0.0000188 -0.0000803 35 0.11 -24.589 -131.352 2010-10-04T22:26:20.802111232 INFO 2025-06-26 16:08:16,064 calibrate.py _nudge_pos():1806 [1] 294: 0.130 0.0000989 -0.0003031 505 1.68 8.730 -33.427 2010-10-04T22:28:10.804575744 INFO 2025-06-26 16:08:16,500 calibrate.py _nudge_pos():1806 [1] 334: 0.130 0.0000556 -0.0003331 765 2.55 3.237 -24.236 2010-10-04T22:31:22.801422848 INFO 2025-06-26 16:08:16,808 calibrate.py _nudge_pos():1806 [1] 364: 0.120 0.0000059 0.0000029 20 0.06 13.715 8.522 2010-10-04T22:31:55.809161728 INFO 2025-06-26 16:08:17,047 calibrate.py _nudge_pos():1806 [1] 387: 0.130 0.0031053 -0.0048479 8176 27.28 16.884 -32.930 2010-10-04T22:59:34.805512704 INFO 2025-06-26 16:08:17,143 calibrate.py _nudge_pos():1806 [1] 396: 0.130 0.0000730 -0.0000747 30 0.10 112.011 -143.109 2010-10-04T22:59:48.804553728 INFO 2025-06-26 16:08:17,496 calibrate.py _nudge_pos():1806 [1] 430: 0.130 0.0001175 -0.0002953 660 2.20 7.937 -24.908 2010-10-04T23:02:34.803181824 INFO 2025-06-26 16:08:17,581 calibrate.py _nudge_pos():1806 [1] 438: 0.140 -0.0000148 -0.0000306 15 0.05 -47.193 -121.522 2010-10-04T23:02:44.802497024 INFO 2025-06-26 16:08:18,640 calibrate.py _nudge_pos():1806 [1] 538: 0.130 0.0035537 -0.0056349 8597 28.66 18.392 -36.428 2010-10-04T23:33:04.807818240 INFO 2025-06-26 16:08:18,715 calibrate.py _nudge_pos():1806 [1] 545: 0.130 0.0000035 -0.0000113 20 0.06 8.102 -33.010 2010-10-04T23:33:14.807132928 INFO 2025-06-26 16:08:18,758 calibrate.py _nudge_pos():1806 [1] 549: 0.140 0.0000344 0.0000075 65 0.21 23.894 6.537 2010-10-04T23:33:30.806037248 INFO 2025-06-26 16:08:18,808 calibrate.py _nudge_pos():1806 [1] 554: 0.140 -0.0000062 -0.0000185 15 0.05 -19.689 -73.311 2010-10-04T23:33:37.805557504 INFO 2025-06-26 16:08:19,327 calibrate.py _nudge_pos():1806 [1] 605: 0.140 0.0024895 -0.0055507 9437 31.48 11.733 -32.673 2010-10-05T00:05:58.802590208 INFO 2025-06-26 16:08:19,831 calibrate.py _nudge_pos():1806 [1] 654: 0.140 0.0000382 -0.0000305 40 0.13 43.635 -43.525 2010-10-05T00:06:54.808753408 INFO 2025-06-26 16:08:20,257 calibrate.py _nudge_pos():1806 [1] 695: 0.140 0.0023376 -0.0060087 9622 32.08 10.812 -34.707 2010-10-05T00:39:40.804073472 INFO 2025-06-26 16:08:20,496 calibrate.py _nudge_pos():1806 [1] 718: 0.140 0.0001550 -0.0001539 35 0.11 202.924 -251.725 2010-10-05T00:40:09.802087168 INFO 2025-06-26 16:08:20,517 calibrate.py _nudge_pos():1806 [1] 720: 0.150 -0.0000056 0.0000155 15 0.05 -17.949 61.723 2010-10-05T00:40:13.801813248 INFO 2025-06-26 16:08:21,120 calibrate.py _nudge_pos():1806 [1] 776: 0.150 0.0032560 -0.0076220 9719 32.41 14.907 -43.573 2010-10-05T01:13:34.804734976 INFO 2025-06-26 16:08:21,554 calibrate.py _nudge_pos():1806 [1] 818: 0.150 0.0000575 0.0000066 80 0.26 32.393 4.615 2010-10-05T01:14:31.800830720 INFO 2025-06-26 16:08:22,173 calibrate.py _nudge_pos():1806 [1] 877: 0.150 -0.0002010 -0.0069148 9708 32.36 -0.922 -39.592 2010-10-05T01:47:52.803752448 INFO 2025-06-26 16:08:22,922 calibrate.py _nudge_pos():1806 [1] 948: 0.150 -0.0051932 -0.0034282 9601 32.03 -24.060 -19.833 2010-10-05T02:21:04.807290880 INFO 2025-06-26 16:08:23,016 calibrate.py _nudge_pos():1806 [1] 957: 0.150 -0.0000183 0.0000049 35 0.11 -23.984 8.078 2010-10-05T02:21:20.806194688 INFO 2025-06-26 16:08:23,460 calibrate.py _nudge_pos():1806 [1] 999: 0.150 -0.0001293 0.0000030 35 0.11 -169.274 4.854 2010-10-05T02:22:09.802838272 INFO 2025-06-26 16:08:23,706 calibrate.py _nudge_pos():1806 [1] 1023: 0.150 -0.0060402 -0.0005253 9874 32.93 -27.212 -2.956 2010-10-05T02:55:28.805897216 INFO 2025-06-26 16:08:24,341 calibrate.py _nudge_pos():1806 [1] 1083: 0.160 0.0000072 -0.0000342 25 0.08 13.398 -79.152 2010-10-05T02:56:33.801444864 INFO 2025-06-26 16:08:24,362 calibrate.py _nudge_pos():1806 [1] 1085: 0.150 0.0000204 0.0000680 25 0.08 37.920 157.526 2010-10-05T02:56:39.801033728 INFO 2025-06-26 16:08:24,486 calibrate.py _nudge_pos():1806 [1] 1097: 0.150 -0.0030784 -0.0008243 9217 30.73 -14.857 -4.970 2010-10-05T03:27:34.803957248 INFO 2025-06-26 16:08:24,706 calibrate.py _nudge_pos():1806 [1] 1118: 0.160 0.0000125 0.0000809 40 0.13 14.207 115.335 2010-10-05T03:28:02.802039296 INFO 2025-06-26 16:08:24,943 calibrate.py _nudge_pos():1806 [1] 1141: 0.160 0.0000801 0.0000025 30 0.10 122.919 4.768 2010-10-05T03:28:30.800121344 INFO 2025-06-26 16:08:25,202 calibrate.py _nudge_pos():1806 [1] 1165: 0.150 0.0000009 -0.0000045 15 0.05 2.777 -17.994 2010-10-05T03:28:56.808339712 INFO 2025-06-26 16:08:25,545 calibrate.py _nudge_pos():1806 [1] 1198: 0.160 0.0005845 -0.0004245 2937 9.80 8.847 -8.029 2010-10-05T03:39:16.805867008 INFO 2025-06-26 16:08:25,849 calibrate.py _nudge_pos():1806 [1] 1227: 0.160 -0.0000172 0.0000154 30 0.10 -26.331 29.467 2010-10-05T03:39:50.803537920 INFO 2025-06-26 16:08:26,318 calibrate.py _nudge_pos():1806 [1] 1271: 0.160 0.0019220 -0.0065302 9809 32.71 8.713 -36.989 2010-10-05T04:13:16.806117376 INFO 2025-06-26 16:08:27,129 calibrate.py _nudge_pos():1806 [1] 1343: 0.160 0.0023448 -0.0061316 9780 32.61 10.662 -34.838 2010-10-05T04:47:04.807189760 INFO 2025-06-26 16:08:27,876 calibrate.py _nudge_pos():1806 [1] 1414: 0.160 0.0025531 -0.0058150 9873 32.93 11.496 -32.721 2010-10-05T05:21:10.807028992 INFO 2025-06-26 16:08:28,536 calibrate.py _nudge_pos():1806 [1] 1476: 0.170 0.0024729 -0.0047711 9231 30.78 11.912 -28.723 2010-10-05T05:52:58.806322432 INFO 2025-06-26 16:08:29,245 calibrate.py _nudge_pos():1806 [1] 1541: 0.170 0.0031450 -0.0041947 9395 31.33 14.882 -24.809 2010-10-05T06:25:22.803149312 INFO 2025-06-26 16:08:30,134 calibrate.py _nudge_pos():1806 [1] 1624: 0.170 0.0035189 -0.0034673 9424 31.43 16.596 -20.442 2010-10-05T06:58:10.808331776 INFO 2025-06-26 16:08:30,862 calibrate.py _nudge_pos():1806 [1] 1692: 0.170 0.0026449 -0.0015378 8300 27.68 14.161 -10.295 2010-10-05T07:26:58.809955584 INFO 2025-06-26 16:08:31,687 calibrate.py _nudge_pos():1806 [1] 1767: 0.170 -0.0032507 -0.0054431 9435 31.46 -15.310 -32.057 2010-10-05T07:59:40.805549568 INFO 2025-06-26 16:08:32,650 calibrate.py _nudge_pos():1806 [1] 1855: 0.190 -0.0038130 -0.0046142 9433 31.45 -17.965 -27.190 2010-10-05T08:32:34.800321536 INFO 2025-06-26 16:08:33,511 calibrate.py _nudge_pos():1806 [1] 1935: 0.190 -0.0028577 -0.0017372 6920 23.08 -18.341 -13.947 2010-10-05T08:56:58.800030976 INFO 2025-06-26 16:08:34,298 calibrate.py _nudge_pos():1806 [1] 2006: 0.180 0.0046549 -0.0063855 9240 30.81 22.382 -38.400 2010-10-05T09:28:58.808501248 INFO 2025-06-26 16:08:35,040 calibrate.py _nudge_pos():1806 [1] 2074: 0.180 0.0040280 -0.0066022 9319 31.08 19.205 -39.362 2010-10-05T10:01:10.806150400 INFO 2025-06-26 16:08:35,908 calibrate.py _nudge_pos():1806 [1] 2152: 0.190 0.0033060 -0.0071989 9508 31.71 15.451 -42.063 2010-10-05T10:34:10.800511488 INFO 2025-06-26 16:08:36,032 calibrate.py _nudge_pos():1806 [1] 2163: 0.180 0.0000277 0.0000827 15 0.05 87.998 328.538 2010-10-05T10:34:23.809620224 INFO 2025-06-26 16:08:36,442 calibrate.py _nudge_pos():1806 [1] 2200: 0.190 -0.0000115 -0.0000005 15 0.05 -36.430 -2.005 2010-10-05T10:35:02.806948608 INFO 2025-06-26 16:08:36,766 calibrate.py _nudge_pos():1806 [1] 2229: 0.190 0.0017924 -0.0071752 9345 31.16 8.525 -42.665 2010-10-05T11:06:40.806926848 INFO 2025-06-26 16:08:37,489 calibrate.py _nudge_pos():1806 [1] 2293: 0.200 -0.0000634 0.0000443 19 0.06 -156.722 136.757 2010-10-05T11:07:47.802337536 INFO 2025-06-26 16:08:37,501 calibrate.py _nudge_pos():1806 [1] 2294: 0.200 -0.0008609 -0.0067593 9644 32.18 -3.966 -38.926 2010-10-05T11:39:58.800055040 INFO 2025-06-26 16:08:37,761 calibrate.py _nudge_pos():1806 [1] 2317: 0.190 -0.0000024 -0.0000059 14 0.04 -8.066 -25.069 2010-10-05T11:40:23.808341760 INFO 2025-06-26 16:08:38,738 calibrate.py _nudge_pos():1806 [1] 2405: 0.200 -0.0005484 -0.0003907 4147 13.83 -5.878 -5.236 2010-10-05T11:55:40.805523200 INFO 2025-06-26 16:08:39,535 calibrate.py _nudge_pos():1806 [1] 2477: 0.010 -0.0032629 -0.0049985 9241 30.81 -15.697 -30.059 2010-10-05T12:27:41.003980544 INFO 2025-06-26 16:08:40,434 calibrate.py _nudge_pos():1806 [1] 2557: 0.010 -0.0032780 -0.0054255 9650 32.18 -15.102 -31.241 2010-10-05T13:01:11.006285824 INFO 2025-06-26 16:09:02,303 calibrate.py _nudge_pos():1862 [1] 4460: - - - 3 0.01 - - INFO 2025-06-26 16:09:02,304 calibrate.py _nudge_pos():1868 [1] Points in final series = 282781 WARNING 2025-06-26 16:09:02,722 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 16:09:31,558 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 110 of 226518 INFO 2025-06-26 16:09:33,312 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:09:49,609 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 16:09:51,354 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 16:09:51,358 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.277.01/ctd1.nc WARNING 2025-06-26 16:09:51,360 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (2904) ctd1_salinity values found outside of range. This may indicate a problem with the ctd1 data. INFO 2025-06-26 16:09:51,360 calibrate.py _range_qc_combined_nc():898 [1] Setting 2904 ctd1_salinity values to NaN INFO 2025-06-26 16:09:51,360 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:09:51,360 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 16:10:03,991 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:10:05,715 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:10:05,719 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.277.01/ctd2.nc INFO 2025-06-26 16:10:05,720 calibrate.py _range_qc_combined_nc():898 [1] Setting 63 ctd2_salinity values to NaN INFO 2025-06-26 16:10:05,721 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:10:05,721 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 16:10:07,887 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 16:10:10,474 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 3311835 3311836 3311837] INFO 2025-06-26 16:10:11,002 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 16:11:03,699 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.277.01 ERROR 2025-06-26 16:11:03,699 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.277.01 INFO 2025-06-26 16:11:03,916 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_cal.nc INFO 2025-06-26 16:11:28,845 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 16:11:28,853 process.py align():251 [1] Alignment steps for 2010.277.01 INFO 2025-06-26 16:11:29,019 align.py process_cal():139 [1] Processing dorado_2010.277.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.277.01 INFO 2025-06-26 16:11:29,096 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:11:29,104 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:11:29,285 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:11:29,295 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:11:29,478 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:11:29,492 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:11:29,602 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 16:11:29,602 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 16:11:29,673 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:11:29,683 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:11:29,859 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:29,868 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:11:30,024 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,034 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:11:30,189 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,198 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 16:11:30,352 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,361 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:30,523 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,532 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:30,685 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,694 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:30,854 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:30,863 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,017 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,026 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,181 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,190 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,347 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,357 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,517 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,527 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,682 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,691 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:31,848 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:31,857 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,016 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,024 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,184 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,194 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,351 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,362 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,521 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,531 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,689 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,699 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:32,859 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:32,869 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:33,027 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:33,037 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:33,201 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:33,211 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:33,372 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.277.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:11:33,381 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:11:33,586 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:11:33,713 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:11:33,836 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:11:33,963 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 16:11:34,097 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 16:11:34,355 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.97 INFO 2025-06-26 16:11:35,808 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:11:35,927 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_align.nc INFO 2025-06-26 16:11:36,257 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 16:11:36,261 process.py resample():273 [1] Resampling steps for 2010.277.01 INFO 2025-06-26 16:11:36,262 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 16:11:36,343 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_align.nc mission netCDF file INFO 2025-06-26 16:11:36,352 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_align.nc mission netCDF file INFO 2025-06-26 16:11:36,354 resample.py get_mission_start_end():1145 [1] navigation: 2010-10-04T21:49:48.942263808 to 2010-10-05T13:33:44.602455296 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 16:11:36,357 resample.py get_mission_start_end():1145 [1] hs2 : 2010-10-04T21:49:06.145195776 to 2010-10-05T13:33:44.562458368 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 16:11:36,359 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-10-04T21:49:19.414286848 to 2010-10-05T13:33:44.692449280 (0 days 00:00:00 before mission_end) INFO 2025-06-26 16:11:36,362 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-10-04T21:49:19.614273024 to 2010-10-05T13:33:44.572457472 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 16:11:36,363 resample.py get_mission_start_end():1145 [1] isus : 2010-10-04T21:50:00.921443328 to 2010-10-05T13:33:43.722515712 (0 days 00:00:00.969933568 before mission_end) INFO 2025-06-26 16:11:36,365 resample.py get_mission_start_end():1145 [1] biolume : 2010-10-04T21:48:58.875659520 to 2010-10-05T13:33:43.412502784 (0 days 00:00:01.279946496 before mission_end) INFO 2025-06-26 16:11:36,367 resample.py get_mission_start_end():1145 [1] tailcone : 2010-10-04T21:49:00.535579904 to 2010-10-05T13:33:44.682450176 (0 days 00:00:00.009999104 before mission_end) INFO 2025-06-26 16:11:36,368 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_align.nc mission netCDF file INFO 2025-06-26 16:11:36,369 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:36,954 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,050 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,145 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,242 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,322 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,407 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,491 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,579 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,655 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,738 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,810 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,883 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:37,956 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,029 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,102 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,177 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,251 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,334 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,423 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,505 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,585 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,664 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,743 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,821 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,861 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,889 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,914 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,939 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,965 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:38,973 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 16:11:38,973 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 16:11:41,153 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 16:11:41,825 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 16:11:42,057 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 16:11:42,152 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 16:11:42,228 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 16:11:42,228 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 16:11:42,330 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 16:11:42,797 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_1S.nc INFO 2025-06-26 16:11:45,748 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd2 INFO 2025-06-26 16:11:49,310 create_products.py gulper_odv():522 [1] Wrote 3 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.277.01/dorado_2010.277.01_1S_Gulper.txt INFO 2025-06-26 16:11:49,310 process.py archive():337 [1] Archiving steps for 2010.277.01 INFO 2025-06-26 16:11:49,310 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01, BASE_PATH = /data/auv_data INFO 2025-06-26 16:11:49,312 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 16:11:49,313 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.277.01_1S.nc INFO 2025-06-26 16:11:49,361 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:11:49,362 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.277.01_cal.nc INFO 2025-06-26 16:11:49,701 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:11:49,702 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.277.01_align.nc INFO 2025-06-26 16:11:50,182 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:11:50,246 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,303 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,310 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,362 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,524 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,533 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,603 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,649 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,800 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,804 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010277/2010.277.01 done. INFO 2025-06-26 16:11:50,804 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 16:11:50,806 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.277.01_1S_Gulper.txt INFO 2025-06-26 16:11:50,810 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.277.01/dorado_2010.277.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 16:11:50,810 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.277.01/dorado_2010.277.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf