INFO 2025-06-26 15:50:09,043 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:50:09,043 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:50:09,043 process.py process_mission():449 [1] Processing AUVCTD mission 2010.258.07 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:50:09,043 process.py download_process():165 [1] Download and processing steps for 2010.258.07 INFO 2025-06-26 15:50:09,043 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.07 INFO 2025-06-26 15:50:09,043 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.07 to /data/auv_data/dorado/missionlogs/2010.258.07 INFO 2025-06-26 15:50:11,960 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.258.07 INFO 2025-06-26 15:50:11,960 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/ctdDriver.log (4284779 bytes) INFO 2025-06-26 15:50:12,283 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/ctdDriver2.log (4284671 bytes) INFO 2025-06-26 15:50:12,600 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/gps.log (128228 bytes) INFO 2025-06-26 15:50:12,623 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/hydroscatlog.log (3755410 bytes) INFO 2025-06-26 15:50:13,003 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.258.07/hydroscatlog.log: [597] INFO 2025-06-26 15:50:13,013 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/navigation.log (13145090 bytes) INFO 2025-06-26 15:50:13,982 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/isuslog.log (277909 bytes) INFO 2025-06-26 15:50:14,014 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/parosci.log (4361558 bytes) INFO 2025-06-26 15:50:14,400 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/tailCone.log (2677867 bytes) INFO 2025-06-26 15:50:14,745 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.78 seconds INFO 2025-06-26 15:50:14,746 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.07/lopc.bin (15652000 bytes) INFO 2025-06-26 15:50:14,746 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:50:14 2025 INFO 2025-06-26 15:50:14,746 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.258.07/parosci.nc INFO 2025-06-26 15:50:14,746 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:50:14,746 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.258.07/parosci.nc INFO 2025-06-26 15:50:14,749 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284580584.8, sensor_off_time = 1284591768.4 INFO 2025-06-26 15:50:14,749 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 11183 seconds. Expecting to read 22366 L frames from the lopc.bin file. INFO 2025-06-26 15:50:14,749 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 22366 records from the lopc.bin file. INFO 2025-06-26 15:50:14,887 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-15 19:56:24 Z and endTime = 2010-09-15 23:02:48 Z with 22366 records expected to be read from lopc.bin INFO 2025-06-26 15:50:14,887 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.258.07/lopc.bin INFO 2025-06-26 15:50:14,887 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.258.07/lopc.nc INFO 2025-06-26 15:50:14,888 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.258.07/lopc.nc INFO 2025-06-26 15:50:14,889 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.258.07 INFO 2025-06-26 15:50:14,889 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:50:14,892 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0716127 WARNING 2025-06-26 15:50:14,892 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:50:14,952 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:50:14,952 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:50:14,952 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:50:15,381 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:50:15,382 process.py calibrate():227 [1] Calibration steps for 2010.258.07 INFO 2025-06-26 15:50:15,503 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:50:15,505 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:50:16,680 calibrate.py _nudge_pos():1806 [1] 161: 0.010 0.0038998 -0.0009564 8722 29.08 20.054 -6.094 2010-09-15T20:28:04.879725824 INFO 2025-06-26 15:50:17,127 calibrate.py _nudge_pos():1806 [1] 208: 0.010 0.0020348 -0.0040389 10209 34.03 8.943 -21.993 2010-09-15T21:02:52.886687744 INFO 2025-06-26 15:50:17,824 calibrate.py _nudge_pos():1806 [1] 280: 0.010 0.0014660 -0.0032203 6690 22.30 9.834 -26.763 2010-09-15T21:26:22.880096512 INFO 2025-06-26 15:50:19,639 calibrate.py _nudge_pos():1806 [1] 469: 0.010 -0.0000100 -0.0000442 35 0.11 -13.181 -72.204 2010-09-15T21:29:37.886737664 INFO 2025-06-26 15:50:24,825 calibrate.py _nudge_pos():1806 [1] 1004: 0.020 0.0008162 -0.0036393 11138 37.13 3.288 -18.162 2010-09-15T22:15:40.877459712 INFO 2025-06-26 15:50:25,415 calibrate.py _nudge_pos():1806 [1] 1065: 0.020 0.0006890 -0.0019101 10319 34.40 2.996 -10.290 2010-09-15T22:51:04.881955584 INFO 2025-06-26 15:50:32,227 calibrate.py _nudge_pos():1862 [1] 1721: - - - 3 0.01 - - INFO 2025-06-26 15:50:32,228 calibrate.py _nudge_pos():1868 [1] Points in final series = 55649 WARNING 2025-06-26 15:50:32,301 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:50:38,343 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:50:38,778 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:50:39,132 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:50:39,134 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.258.07/ctd1.nc INFO 2025-06-26 15:50:39,135 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:50:39,135 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:50:39,135 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:50:39,551 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:50:39,894 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:50:39,896 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.258.07/ctd2.nc INFO 2025-06-26 15:50:39,897 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:50:39,898 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:50:39,898 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:50:39,911 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.07 ERROR 2025-06-26 15:50:39,911 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.258.07 ERROR 2025-06-26 15:50:39,911 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.07 INFO 2025-06-26 15:50:39,960 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_cal.nc INFO 2025-06-26 15:50:40,035 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:50:40,041 process.py align():251 [1] Alignment steps for 2010.258.07 INFO 2025-06-26 15:50:40,069 align.py process_cal():139 [1] Processing dorado_2010.258.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.258.07 INFO 2025-06-26 15:50:40,089 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:50:40,092 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:50:40,135 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:50:40,138 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:50:40,181 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:50:40,185 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:50:40,211 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:50:40,211 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:50:40,227 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:50:40,231 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:50:40,275 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,278 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,317 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,321 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,361 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,364 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,400 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,404 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,441 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,444 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,480 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,484 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,522 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,525 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,562 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,566 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,604 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,607 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,643 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,647 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,684 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,688 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,724 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,728 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,767 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,770 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,807 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,810 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,849 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,852 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,891 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,895 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,933 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,937 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:40,975 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:40,979 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:41,019 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:41,022 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:41,059 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:41,063 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:41,101 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:41,105 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:41,142 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:50:41,145 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:50:41,190 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:50:41,223 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:50:41,255 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:50:41,290 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:50:41,321 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_align.nc INFO 2025-06-26 15:50:41,382 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:50:41,384 process.py resample():273 [1] Resampling steps for 2010.258.07 INFO 2025-06-26 15:50:41,385 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:50:41,407 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_align.nc mission netCDF file INFO 2025-06-26 15:50:41,412 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_align.nc mission netCDF file INFO 2025-06-26 15:50:41,413 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-15T19:57:08.696883200 to 2010-09-15T23:02:48.483755520 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:50:41,415 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-15T19:56:30.229518336 to 2010-09-15T23:02:48.363763712 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:50:41,416 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-15T19:56:52.378001152 to 2010-09-15T23:02:48.373763072 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 15:50:41,417 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-15T19:56:52.368001792 to 2010-09-15T23:02:48.353764608 (0 days 00:00:00.129990912 before mission_end) INFO 2025-06-26 15:50:41,419 resample.py get_mission_start_end():1145 [1] isus : 2010-09-15T19:57:39.794752768 to 2010-09-15T23:02:48.223773184 (0 days 00:00:00.259982336 before mission_end) INFO 2025-06-26 15:50:41,420 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-15T19:56:23.939949312 to 2010-09-15T23:02:48.343764992 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 15:50:41,421 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_align.nc mission netCDF file INFO 2025-06-26 15:50:41,421 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,559 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,585 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,610 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,634 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,656 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,678 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,700 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,721 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,742 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,762 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,782 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,802 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,822 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,843 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,863 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,884 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,904 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,927 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,948 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,970 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:41,992 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,014 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,035 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,056 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,068 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,080 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,092 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,115 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:50:42,274 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_1S.nc INFO 2025-06-26 15:50:43,327 create_products.py gulper_odv():401 [1] No gulper times found for 2010.258.07 INFO 2025-06-26 15:50:43,328 process.py archive():337 [1] Archiving steps for 2010.258.07 INFO 2025-06-26 15:50:43,328 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07, BASE_PATH = /data/auv_data INFO 2025-06-26 15:50:43,328 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:50:43,329 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.07_1S.nc INFO 2025-06-26 15:50:43,343 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:50:43,343 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.07_cal.nc INFO 2025-06-26 15:50:43,398 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:50:43,398 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.07_align.nc INFO 2025-06-26 15:50:43,446 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:50:43,463 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,479 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,483 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,498 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,533 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,539 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,554 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,568 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,574 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.07 done. INFO 2025-06-26 15:50:43,574 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:50:43,574 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.07/dorado_2010.258.07_processing.log /Volumes/AUVCTD/surveys/2010/netcdf