INFO 2025-06-26 15:49:20,320 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:49:20,320 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:49:20,321 process.py process_mission():449 [1] Processing AUVCTD mission 2010.258.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:49:20,321 process.py download_process():165 [1] Download and processing steps for 2010.258.02 INFO 2025-06-26 15:49:20,321 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.02 INFO 2025-06-26 15:49:20,321 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.02 to /data/auv_data/dorado/missionlogs/2010.258.02 INFO 2025-06-26 15:49:21,378 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.258.02 INFO 2025-06-26 15:49:21,378 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/ctdDriver.log (1690283 bytes) INFO 2025-06-26 15:49:21,509 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/ctdDriver2.log (1689791 bytes) INFO 2025-06-26 15:49:21,633 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/gps.log (51764 bytes) INFO 2025-06-26 15:49:21,646 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/hydroscatlog.log (1484722 bytes) INFO 2025-06-26 15:49:21,804 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/navigation.log (5167582 bytes) INFO 2025-06-26 15:49:22,191 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/isuslog.log (108981 bytes) INFO 2025-06-26 15:49:22,208 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/parosci.log (1723046 bytes) INFO 2025-06-26 15:49:22,376 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/tailCone.log (1059355 bytes) INFO 2025-06-26 15:49:22,517 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.14 seconds INFO 2025-06-26 15:49:22,517 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.02/lopc.bin (5772000 bytes) INFO 2025-06-26 15:49:22,518 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:49:22 2025 INFO 2025-06-26 15:49:22,518 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.258.02/parosci.nc INFO 2025-06-26 15:49:22,518 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:49:22,518 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.258.02/parosci.nc INFO 2025-06-26 15:49:22,520 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284533009.1, sensor_off_time = 1284537435.5 INFO 2025-06-26 15:49:22,520 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 4426 seconds. Expecting to read 8852 L frames from the lopc.bin file. INFO 2025-06-26 15:49:22,520 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 8852 records from the lopc.bin file. INFO 2025-06-26 15:49:22,572 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-15 06:43:29 Z and endTime = 2010-09-15 07:57:15 Z with 8852 records expected to be read from lopc.bin INFO 2025-06-26 15:49:22,572 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.258.02/lopc.bin INFO 2025-06-26 15:49:22,572 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.258.02/lopc.nc INFO 2025-06-26 15:49:22,572 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.258.02/lopc.nc INFO 2025-06-26 15:49:22,573 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.258.02 INFO 2025-06-26 15:49:22,573 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-06-26 15:49:22,576 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:49:22,576 process.py calibrate():227 [1] Calibration steps for 2010.258.02 INFO 2025-06-26 15:49:22,664 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:49:22,666 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:49:23,628 calibrate.py _nudge_pos():1806 [1] 140: 0.150 0.0000666 -0.0029884 8727 29.10 0.342 -19.031 2010-09-15T07:14:52.290238464 INFO 2025-06-26 15:49:24,446 calibrate.py _nudge_pos():1806 [1] 226: 0.150 0.0039775 -0.0024847 9859 32.86 18.095 -14.010 2010-09-15T07:49:10.289255680 INFO 2025-06-26 15:49:25,575 calibrate.py _nudge_pos():1806 [1] 346: 0.160 0.0000218 -0.0000206 15 0.05 69.780 -81.996 2010-09-15T07:51:12.290898176 INFO 2025-06-26 15:49:28,624 calibrate.py _nudge_pos():1806 [1] 667: 0.150 -0.0000069 0.0000330 20 0.06 -16.376 96.630 2010-09-15T07:56:36.288702720 INFO 2025-06-26 15:49:28,993 calibrate.py _nudge_pos():1862 [1] 657: - - - 1 0.00 - - INFO 2025-06-26 15:49:28,993 calibrate.py _nudge_pos():1868 [1] Points in final series = 21887 INFO 2025-06-26 15:49:29,024 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=110) for self.args.mission=2010.258.02 INFO 2025-06-26 15:49:29,026 calibrate.py _depth_process():2175 [1] Setting 3 depths values to NaN WARNING 2025-06-26 15:49:29,028 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:49:29,213 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:49:29,402 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:49:29,539 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:49:29,541 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.258.02/ctd1.nc INFO 2025-06-26 15:49:29,542 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:49:29,543 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:49:29,543 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:49:29,730 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:49:29,870 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:49:29,872 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.258.02/ctd2.nc INFO 2025-06-26 15:49:29,873 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:49:29,874 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:49:29,874 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:49:29,882 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.02 ERROR 2025-06-26 15:49:29,883 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.258.02 ERROR 2025-06-26 15:49:29,883 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.02 INFO 2025-06-26 15:49:29,902 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_cal.nc INFO 2025-06-26 15:49:29,960 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:49:29,966 process.py align():251 [1] Alignment steps for 2010.258.02 INFO 2025-06-26 15:49:29,991 align.py process_cal():139 [1] Processing dorado_2010.258.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.258.02 INFO 2025-06-26 15:49:30,001 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:49:30,003 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:49:30,028 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:49:30,030 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:49:30,052 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:49:30,055 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:49:30,067 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:49:30,067 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:49:30,076 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:49:30,078 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:49:30,099 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,102 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,122 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,124 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,144 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,147 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,166 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,168 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,187 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,190 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,210 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,212 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,231 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,234 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,254 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,257 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,277 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,279 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,298 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,301 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,321 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,324 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,344 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,346 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,367 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,369 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,389 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,391 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,412 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,414 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,435 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,437 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,459 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,462 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,483 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,485 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,506 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,508 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,529 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,531 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,552 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,554 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,574 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:49:30,577 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:49:30,604 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:49:30,629 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:49:30,650 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:49:30,671 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:49:30,689 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_align.nc INFO 2025-06-26 15:49:30,739 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:49:30,741 process.py resample():273 [1] Resampling steps for 2010.258.02 INFO 2025-06-26 15:49:30,741 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:49:30,762 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_align.nc mission netCDF file INFO 2025-06-26 15:49:30,767 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_align.nc mission netCDF file INFO 2025-06-26 15:49:30,768 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-15T06:44:17.095957760 to 2010-09-15T07:57:15.486017536 (0 days 00:00:00.009999104 before mission_end) INFO 2025-06-26 15:49:30,769 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-15T06:43:37.998636032 to 2010-09-15T07:57:15.496016640 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:49:30,770 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-15T06:43:55.537434624 to 2010-09-15T07:57:15.436020736 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:49:30,772 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-15T06:43:56.737352448 to 2010-09-15T07:57:15.376025088 (0 days 00:00:00.119991552 before mission_end) INFO 2025-06-26 15:49:30,773 resample.py get_mission_start_end():1145 [1] isus : 2010-09-15T06:44:42.284232192 to 2010-09-15T07:57:14.826062592 (0 days 00:00:00.669954048 before mission_end) INFO 2025-06-26 15:49:30,774 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-15T06:43:30.989116160 to 2010-09-15T07:57:15.426021632 (0 days 00:00:00.069995008 before mission_end) INFO 2025-06-26 15:49:30,775 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_align.nc mission netCDF file INFO 2025-06-26 15:49:30,775 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,847 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,862 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,876 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,890 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,903 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,916 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,929 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,942 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,955 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,966 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,978 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:30,990 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,002 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,014 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,026 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,037 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,050 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,063 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,077 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,090 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,103 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,116 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,129 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,142 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,152 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,161 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,170 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,184 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:31,302 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_1S.nc INFO 2025-06-26 15:49:32,007 create_products.py gulper_odv():401 [1] No gulper times found for 2010.258.02 INFO 2025-06-26 15:49:32,007 process.py archive():337 [1] Archiving steps for 2010.258.02 INFO 2025-06-26 15:49:32,007 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02, BASE_PATH = /data/auv_data INFO 2025-06-26 15:49:32,007 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:49:32,009 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.02_1S.nc INFO 2025-06-26 15:49:32,019 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:32,020 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.02_cal.nc INFO 2025-06-26 15:49:32,044 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:32,045 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.02_align.nc INFO 2025-06-26 15:49:32,068 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:32,080 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,091 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,095 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,104 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,121 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,127 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,137 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,146 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,150 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.02 done. INFO 2025-06-26 15:49:32,150 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:49:32,150 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.02/dorado_2010.258.02_processing.log /Volumes/AUVCTD/surveys/2010/netcdf