INFO 2025-06-26 15:48:37,070 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:48:37,070 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:48:37,070 process.py process_mission():449 [1] Processing AUVCTD mission 2010.258.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:48:37,070 process.py download_process():165 [1] Download and processing steps for 2010.258.00 INFO 2025-06-26 15:48:37,070 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.00 INFO 2025-06-26 15:48:37,071 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.00 to /data/auv_data/dorado/missionlogs/2010.258.00 INFO 2025-06-26 15:48:39,561 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.258.00 INFO 2025-06-26 15:48:39,561 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/ctdDriver.log (4289867 bytes) INFO 2025-06-26 15:48:39,864 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/ctdDriver2.log (4296191 bytes) INFO 2025-06-26 15:48:40,178 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/gps.log (98852 bytes) INFO 2025-06-26 15:48:40,197 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/hydroscatlog.log (3764902 bytes) INFO 2025-06-26 15:48:40,585 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/navigation.log (13174354 bytes) INFO 2025-06-26 15:48:41,522 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/isuslog.log (278805 bytes) INFO 2025-06-26 15:48:41,554 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/parosci.log (4378550 bytes) INFO 2025-06-26 15:48:41,924 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/tailCone.log (2687515 bytes) INFO 2025-06-26 15:48:42,263 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.70 seconds INFO 2025-06-26 15:48:42,263 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.00/lopc.bin (15737000 bytes) INFO 2025-06-26 15:48:42,264 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:48:42 2025 INFO 2025-06-26 15:48:42,264 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.258.00/parosci.nc INFO 2025-06-26 15:48:42,264 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:48:42,264 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.258.00/parosci.nc INFO 2025-06-26 15:48:42,267 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284514700.3, sensor_off_time = 1284525913.5 INFO 2025-06-26 15:48:42,267 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 11213 seconds. Expecting to read 22426 L frames from the lopc.bin file. INFO 2025-06-26 15:48:42,267 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 22426 records from the lopc.bin file. INFO 2025-06-26 15:48:42,404 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-15 01:38:20 Z and endTime = 2010-09-15 04:45:13 Z with 22426 records expected to be read from lopc.bin INFO 2025-06-26 15:48:42,404 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.258.00/lopc.bin INFO 2025-06-26 15:48:42,404 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.258.00/lopc.nc INFO 2025-06-26 15:48:42,405 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.258.00/lopc.nc INFO 2025-06-26 15:48:42,405 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.258.00 INFO 2025-06-26 15:48:42,405 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:48:42,498 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:48:42,499 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:48:42,499 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:48:43,070 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:48:43,071 process.py calibrate():227 [1] Calibration steps for 2010.258.00 INFO 2025-06-26 15:48:43,273 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:48:43,275 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:48:44,833 calibrate.py _nudge_pos():1806 [1] 207: 0.060 -0.0034830 -0.0010716 8469 28.23 -18.438 -7.034 2010-09-15T02:09:58.333459968 INFO 2025-06-26 15:48:45,317 calibrate.py _nudge_pos():1806 [1] 255: 0.070 -0.0023381 -0.0045202 9123 30.41 -11.487 -27.540 2010-09-15T02:41:10.335219456 INFO 2025-06-26 15:48:45,717 calibrate.py _nudge_pos():1806 [1] 297: 0.060 0.0022206 -0.0040050 6123 20.41 16.255 -36.355 2010-09-15T03:02:16.338492160 INFO 2025-06-26 15:48:47,606 calibrate.py _nudge_pos():1806 [1] 496: 0.080 0.0029838 -0.0050371 10979 36.60 12.185 -25.505 2010-09-15T03:42:10.334492160 INFO 2025-06-26 15:48:47,987 calibrate.py _nudge_pos():1806 [1] 536: 0.080 0.0001059 -0.0015540 9074 30.25 0.523 -9.520 2010-09-15T04:13:04.337484288 INFO 2025-06-26 15:48:48,121 calibrate.py _nudge_pos():1806 [1] 550: 0.030 -0.0000176 0.0000241 21 0.07 -39.377 66.878 2010-09-15T04:13:21.536306176 INFO 2025-06-26 15:48:48,236 calibrate.py _nudge_pos():1806 [1] 562: 0.080 -0.0015339 -0.0032735 5494 18.31 -12.515 -33.122 2010-09-15T04:31:52.330211328 INFO 2025-06-26 15:48:52,021 calibrate.py _nudge_pos():1806 [1] 965: 0.080 0.0000213 -0.0000193 20 0.06 50.157 -56.587 2010-09-15T04:38:38.332398336 INFO 2025-06-26 15:48:55,751 calibrate.py _nudge_pos():1862 [1] 1311: - - - 0 0.00 - - INFO 2025-06-26 15:48:55,751 calibrate.py _nudge_pos():1868 [1] Points in final series = 55815 INFO 2025-06-26 15:48:55,821 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=110) for self.args.mission=2010.258.00 INFO 2025-06-26 15:48:55,823 calibrate.py _depth_process():2175 [1] Setting 4 depths values to NaN WARNING 2025-06-26 15:48:55,825 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:48:55,913 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 44808 INFO 2025-06-26 15:48:56,251 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:56,677 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:57,008 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:57,010 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.258.00/ctd1.nc INFO 2025-06-26 15:48:57,011 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:48:57,011 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:57,011 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:48:57,415 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:57,768 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:57,770 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.258.00/ctd2.nc INFO 2025-06-26 15:48:57,771 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:48:57,772 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:57,772 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:48:57,785 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.00 ERROR 2025-06-26 15:48:57,785 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.258.00 ERROR 2025-06-26 15:48:57,785 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.00 INFO 2025-06-26 15:48:57,831 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_cal.nc INFO 2025-06-26 15:48:57,900 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:48:57,906 process.py align():251 [1] Alignment steps for 2010.258.00 INFO 2025-06-26 15:48:57,931 align.py process_cal():139 [1] Processing dorado_2010.258.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.258.00 INFO 2025-06-26 15:48:57,950 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:57,953 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:57,995 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:57,999 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:58,042 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:58,045 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:58,070 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:48:58,070 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:48:58,086 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:58,090 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:58,132 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,135 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,172 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,176 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,213 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,216 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,252 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,256 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,293 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,297 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,333 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,337 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,375 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,378 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,414 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,417 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,455 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,459 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,497 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,500 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,539 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,542 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,579 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,583 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,622 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,625 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,662 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,665 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,704 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,707 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,744 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,747 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,785 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,789 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,826 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,829 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,867 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,870 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,907 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,911 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,950 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,954 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:58,991 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:58,995 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:59,050 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:59,083 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:59,117 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:59,152 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:48:59,183 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_align.nc INFO 2025-06-26 15:48:59,242 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:48:59,244 process.py resample():273 [1] Resampling steps for 2010.258.00 INFO 2025-06-26 15:48:59,244 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:48:59,269 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_align.nc mission netCDF file INFO 2025-06-26 15:48:59,274 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_align.nc mission netCDF file INFO 2025-06-26 15:48:59,276 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-15T01:39:09.110140672 to 2010-09-15T04:45:13.335338752 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 15:48:59,277 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-15T01:38:26.593053440 to 2010-09-15T04:45:13.245345024 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:48:59,279 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-15T01:39:03.860500224 to 2010-09-15T04:45:13.365336832 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:48:59,280 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-15T01:38:47.001655040 to 2010-09-15T04:45:13.245345024 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:48:59,282 resample.py get_mission_start_end():1145 [1] isus : 2010-09-15T01:39:37.178217984 to 2010-09-15T04:45:13.215346944 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 15:48:59,283 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-15T01:38:20.913442304 to 2010-09-15T04:45:13.305340928 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:48:59,284 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_align.nc mission netCDF file INFO 2025-06-26 15:48:59,285 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,420 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,446 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,469 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,493 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,515 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,537 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,558 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,579 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,598 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,618 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,638 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,658 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,677 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,697 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,715 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,734 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,753 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,774 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,796 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,816 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,837 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,857 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,878 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,899 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,912 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,923 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,934 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:59,958 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:49:00,127 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_1S.nc INFO 2025-06-26 15:49:01,136 create_products.py gulper_odv():401 [1] No gulper times found for 2010.258.00 INFO 2025-06-26 15:49:01,136 process.py archive():337 [1] Archiving steps for 2010.258.00 INFO 2025-06-26 15:49:01,136 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00, BASE_PATH = /data/auv_data INFO 2025-06-26 15:49:01,138 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:49:01,139 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.00_1S.nc INFO 2025-06-26 15:49:01,153 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:01,154 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.00_cal.nc INFO 2025-06-26 15:49:01,205 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:01,206 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.00_align.nc INFO 2025-06-26 15:49:01,253 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:49:01,270 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,286 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,290 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,304 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,339 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,344 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,360 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,374 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,380 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.00 done. INFO 2025-06-26 15:49:01,380 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:49:01,381 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.00/dorado_2010.258.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf