INFO 2025-06-26 15:47:10,076 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:47:10,076 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna missions in Monterey Bay rhodamine sensor replaces CDOM - around time of Board meeting - ctdToUse = ctd1 INFO 2025-06-26 15:47:10,076 process.py process_mission():449 [1] Processing AUVCTD mission 2010.182.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:47:10,077 process.py download_process():165 [1] Download and processing steps for 2010.182.02 INFO 2025-06-26 15:47:10,077 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010182/2010.182.02 INFO 2025-06-26 15:47:10,077 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010182/2010.182.02 to /data/auv_data/dorado/missionlogs/2010.182.02 INFO 2025-06-26 15:47:14,209 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.182.02 INFO 2025-06-26 15:47:14,210 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/ctdDriver.log (8350091 bytes) INFO 2025-06-26 15:47:14,838 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/ctdDriver2.log (8349983 bytes) INFO 2025-06-26 15:47:15,464 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/gps.log (70916 bytes) INFO 2025-06-26 15:47:15,480 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/hydroscatlog.log (7310626 bytes) INFO 2025-06-26 15:47:16,241 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/navigation.log (25629254 bytes) INFO 2025-06-26 15:47:18,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/isuslog.log (541333 bytes) INFO 2025-06-26 15:47:18,114 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/parosci.log (8524550 bytes) INFO 2025-06-26 15:47:18,834 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/tailCone.log (5218699 bytes) INFO 2025-06-26 15:47:19,474 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.26 seconds INFO 2025-06-26 15:47:19,474 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.182.02/lopc.bin (106482884 bytes) INFO 2025-06-26 15:47:19,474 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:47:19 2025 INFO 2025-06-26 15:47:19,474 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.182.02/parosci.nc INFO 2025-06-26 15:47:19,474 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:47:19,475 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.182.02/parosci.nc INFO 2025-06-26 15:47:19,478 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1277996931.4, sensor_off_time = 1278018701.2 INFO 2025-06-26 15:47:19,478 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 21769 seconds. Expecting to read 43538 L frames from the lopc.bin file. INFO 2025-06-26 15:47:19,478 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 43538 records from the lopc.bin file. INFO 2025-06-26 15:47:19,731 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-07-01 15:08:51 Z and endTime = 2010-07-01 21:11:41 Z with 43538 records expected to be read from lopc.bin INFO 2025-06-26 15:47:19,731 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.182.02/lopc.bin INFO 2025-06-26 15:47:19,732 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.182.02/lopc.nc INFO 2025-06-26 15:47:19,732 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.182.02/lopc.nc INFO 2025-06-26 15:47:19,733 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.182.02 INFO 2025-06-26 15:47:19,733 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-06-26 15:47:19,761 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:47:19,762 process.py calibrate():227 [1] Calibration steps for 2010.182.02 INFO 2025-06-26 15:47:19,935 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:47:19,937 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:47:20,554 calibrate.py _nudge_pos():1806 [1] 105: 0.010 0.0027018 -0.0014920 8555 28.51 14.036 -9.696 2010-07-01T15:39:04.819320320 INFO 2025-06-26 15:47:21,287 calibrate.py _nudge_pos():1806 [1] 179: 0.020 -0.0027556 -0.0058637 9114 30.38 -13.435 -35.765 2010-07-01T16:10:40.819435264 INFO 2025-06-26 15:47:21,887 calibrate.py _nudge_pos():1806 [1] 243: 0.030 -0.0037670 -0.0041845 8985 29.95 -18.628 -25.892 2010-07-01T16:41:40.812017152 INFO 2025-06-26 15:47:22,624 calibrate.py _nudge_pos():1806 [1] 321: 0.030 0.0043739 -0.0005939 6905 23.01 28.152 -4.782 2010-07-01T17:05:58.812137472 INFO 2025-06-26 15:47:23,359 calibrate.py _nudge_pos():1806 [1] 398: 0.040 -0.0033484 -0.0034972 9070 30.23 -16.410 -21.437 2010-07-01T17:37:28.812663296 INFO 2025-06-26 15:47:24,056 calibrate.py _nudge_pos():1806 [1] 472: 0.040 -0.0030827 -0.0047614 9055 30.18 -15.135 -29.234 2010-07-01T18:08:52.813600512 INFO 2025-06-26 15:47:24,104 calibrate.py _nudge_pos():1806 [1] 477: 0.030 -0.0000589 0.0000468 35 0.11 -76.996 76.516 2010-07-01T18:09:03.812846848 INFO 2025-06-26 15:47:24,903 calibrate.py _nudge_pos():1806 [1] 562: 0.040 0.0046970 -0.0009403 6665 22.21 31.339 -7.844 2010-07-01T18:32:40.815775744 INFO 2025-06-26 15:47:25,127 calibrate.py _nudge_pos():1806 [1] 585: 0.040 -0.0000010 -0.0000056 15 0.05 -3.298 -22.417 2010-07-01T18:33:05.814063104 INFO 2025-06-26 15:47:25,782 calibrate.py _nudge_pos():1806 [1] 652: 0.040 -0.0029173 -0.0057717 8994 29.98 -14.421 -35.674 2010-07-01T19:04:10.816301824 INFO 2025-06-26 15:47:26,397 calibrate.py _nudge_pos():1806 [1] 715: 0.050 -0.0040031 -0.0045751 8989 29.96 -19.796 -28.294 2010-07-01T19:35:10.818882816 INFO 2025-06-26 15:47:27,158 calibrate.py _nudge_pos():1806 [1] 793: 0.040 0.0053881 -0.0014506 9034 30.11 26.516 -8.926 2010-07-01T20:06:34.819820032 INFO 2025-06-26 15:47:27,526 calibrate.py _nudge_pos():1806 [1] 830: 0.050 -0.0000068 -0.0000034 15 0.05 -21.732 -13.493 2010-07-01T20:07:14.817080064 INFO 2025-06-26 15:47:27,874 calibrate.py _nudge_pos():1806 [1] 865: 0.050 -0.0002293 -0.0046386 9256 30.86 -1.101 -27.849 2010-07-01T20:38:40.817879808 INFO 2025-06-26 15:47:28,572 calibrate.py _nudge_pos():1806 [1] 936: 0.060 -0.0035603 -0.0051629 9369 31.23 -16.901 -30.633 2010-07-01T21:11:04.814706944 INFO 2025-06-26 15:47:28,935 calibrate.py _nudge_pos():1862 [1] 922: - - - 2 0.00 - - INFO 2025-06-26 15:47:28,935 calibrate.py _nudge_pos():1868 [1] Points in final series = 108587 WARNING 2025-06-26 15:47:29,157 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:47:29,963 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:30,767 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:31,435 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:31,438 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.182.02/ctd1.nc INFO 2025-06-26 15:47:31,439 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:47:31,440 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:47:31,440 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:47:32,201 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:32,837 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:32,840 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.182.02/ctd2.nc INFO 2025-06-26 15:47:32,841 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:47:32,841 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:47:32,842 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:47:32,863 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.182.02 ERROR 2025-06-26 15:47:32,863 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.182.02 ERROR 2025-06-26 15:47:32,864 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.182.02 INFO 2025-06-26 15:47:32,950 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_cal.nc INFO 2025-06-26 15:47:33,044 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:47:33,049 process.py align():251 [1] Alignment steps for 2010.182.02 INFO 2025-06-26 15:47:33,076 align.py process_cal():139 [1] Processing dorado_2010.182.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.182.02 INFO 2025-06-26 15:47:33,109 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:33,113 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:47:33,186 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:33,191 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:47:33,264 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:33,269 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:47:33,319 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:47:33,319 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:47:33,347 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:33,352 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:47:33,423 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,427 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,490 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,495 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,560 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,564 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,627 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,631 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,696 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,701 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,764 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,769 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,834 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,839 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,902 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,907 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:33,971 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:33,976 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,038 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,043 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,108 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,112 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,175 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,180 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,244 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,248 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,310 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,315 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,379 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,384 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,446 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,451 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,515 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,520 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,583 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,588 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,654 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,659 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,721 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,726 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,792 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,797 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,859 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:34,863 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:34,939 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:47:34,990 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:47:35,045 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:47:35,100 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:47:35,151 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_align.nc INFO 2025-06-26 15:47:35,227 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:47:35,230 process.py resample():273 [1] Resampling steps for 2010.182.02 INFO 2025-06-26 15:47:35,230 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:47:35,254 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_align.nc mission netCDF file INFO 2025-06-26 15:47:35,260 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_align.nc mission netCDF file INFO 2025-06-26 15:47:35,262 resample.py get_mission_start_end():1145 [1] navigation: 2010-07-01T15:09:41.400122624 to 2010-07-01T21:11:41.212213760 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:47:35,264 resample.py get_mission_start_end():1145 [1] hs2 : 2010-07-01T15:08:57.093157888 to 2010-07-01T21:11:41.092221952 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:47:35,265 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-07-01T15:09:18.621683200 to 2010-07-01T21:11:41.152217856 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:47:35,267 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-07-01T15:09:18.611683840 to 2010-07-01T21:11:41.112220416 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 15:47:35,269 resample.py get_mission_start_end():1145 [1] isus : 2010-07-01T15:10:08.258283008 to 2010-07-01T21:11:41.082222592 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 15:47:35,270 resample.py get_mission_start_end():1145 [1] tailcone : 2010-07-01T15:08:52.973440256 to 2010-07-01T21:11:41.132219136 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 15:47:35,271 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_align.nc mission netCDF file INFO 2025-06-26 15:47:35,272 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,513 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,556 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,597 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,637 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,680 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,715 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,749 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,783 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,815 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,847 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,878 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,909 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,941 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:35,973 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,005 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,038 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,071 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,105 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,138 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,172 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,204 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,237 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,269 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,302 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,318 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,333 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,347 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,385 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:36,606 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_1S.nc INFO 2025-06-26 15:47:38,767 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:47:41,044 create_products.py gulper_odv():522 [1] Wrote 2 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.182.02/dorado_2010.182.02_1S_Gulper.txt INFO 2025-06-26 15:47:41,045 process.py archive():337 [1] Archiving steps for 2010.182.02 INFO 2025-06-26 15:47:41,045 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02, BASE_PATH = /data/auv_data INFO 2025-06-26 15:47:41,046 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:47:41,047 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.182.02_1S.nc INFO 2025-06-26 15:47:41,067 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:41,068 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.182.02_cal.nc INFO 2025-06-26 15:47:41,161 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:41,162 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.182.02_align.nc INFO 2025-06-26 15:47:41,253 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:41,280 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,304 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,309 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,333 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,405 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,413 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,462 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,466 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010182/2010.182.02 done. INFO 2025-06-26 15:47:41,466 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:47:41,468 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.182.02_1S_Gulper.txt INFO 2025-06-26 15:47:41,472 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.182.02/dorado_2010.182.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:47:41,472 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.182.02/dorado_2010.182.02_processing.log /Volumes/AUVCTD/surveys/2010/netcdf