INFO 2025-06-26 15:46:16,491 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:46:16,491 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna missions in Monterey Bay rhodamine sensor replaces CDOM - around time of Board meeting - ctdToUse = ctd1 INFO 2025-06-26 15:46:16,491 process.py process_mission():449 [1] Processing AUVCTD mission 2010.181.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:46:16,491 process.py download_process():165 [1] Download and processing steps for 2010.181.01 INFO 2025-06-26 15:46:16,491 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010181/2010.181.01 INFO 2025-06-26 15:46:16,492 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010181/2010.181.01 to /data/auv_data/dorado/missionlogs/2010.181.01 INFO 2025-06-26 15:46:17,578 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.181.01 INFO 2025-06-26 15:46:17,578 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/ctdDriver.log (697931 bytes) INFO 2025-06-26 15:46:17,634 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/ctdDriver2.log (710687 bytes) INFO 2025-06-26 15:46:17,691 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/gps.log (45860 bytes) INFO 2025-06-26 15:46:17,704 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/hydroscatlog.log (628846 bytes) INFO 2025-06-26 15:46:17,778 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/navigation.log (2163302 bytes) INFO 2025-06-26 15:46:17,938 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/isuslog.log (45333 bytes) INFO 2025-06-26 15:46:17,947 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/parosci.log (732806 bytes) INFO 2025-06-26 15:46:18,013 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/tailCone.log (448459 bytes) INFO 2025-06-26 15:46:18,075 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.50 seconds INFO 2025-06-26 15:46:18,075 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.01/lopc.bin (7817577 bytes) INFO 2025-06-26 15:46:18,075 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:46:18 2025 INFO 2025-06-26 15:46:18,075 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.181.01/parosci.nc INFO 2025-06-26 15:46:18,075 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:46:18,075 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.181.01/parosci.nc INFO 2025-06-26 15:46:18,077 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1277913345.7, sensor_off_time = 1277915221.5 INFO 2025-06-26 15:46:18,077 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 1875 seconds. Expecting to read 3750 L frames from the lopc.bin file. INFO 2025-06-26 15:46:18,077 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 3750 records from the lopc.bin file. INFO 2025-06-26 15:46:18,100 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-06-30 15:55:45 Z and endTime = 2010-06-30 16:27:01 Z with 3750 records expected to be read from lopc.bin INFO 2025-06-26 15:46:18,100 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.181.01/lopc.bin INFO 2025-06-26 15:46:18,100 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.181.01/lopc.nc INFO 2025-06-26 15:46:18,100 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.181.01/lopc.nc INFO 2025-06-26 15:46:18,101 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.181.01 INFO 2025-06-26 15:46:18,101 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:46:18,105 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0850453 WARNING 2025-06-26 15:46:18,105 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:46:18,340 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:46:18,340 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:46:18,340 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:46:18,675 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:46:18,676 process.py calibrate():227 [1] Calibration steps for 2010.181.01 INFO 2025-06-26 15:46:18,743 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:46:18,745 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:46:20,429 calibrate.py _nudge_pos():1806 [1] 219: 0.170 0.0023093 -0.0030055 6254 20.85 16.417 -26.715 2010-06-30T16:20:10.503540992 INFO 2025-06-26 15:46:20,977 calibrate.py _nudge_pos():1806 [1] 277: 0.170 0.0000268 0.0000144 30 0.10 41.142 27.559 2010-06-30T16:21:13.509224960 INFO 2025-06-26 15:46:24,258 calibrate.py _nudge_pos():1862 [1] 577: - - - 5 0.01 - - INFO 2025-06-26 15:46:24,259 calibrate.py _nudge_pos():1868 [1] Points in final series = 9158 INFO 2025-06-26 15:46:24,275 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-0.5, max=22) for self.args.mission=2010.181.01 INFO 2025-06-26 15:46:24,277 calibrate.py _depth_process():2175 [1] Setting 180 depths values to NaN WARNING 2025-06-26 15:46:24,278 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:46:24,376 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:24,472 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 59 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:24,529 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 59 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:24,531 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.181.01/ctd1.nc INFO 2025-06-26 15:46:24,532 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:46:24,533 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:46:24,533 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:46:24,614 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:46:24,691 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:46:24,693 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.181.01/ctd2.nc INFO 2025-06-26 15:46:24,694 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:46:24,694 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:46:24,694 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:46:24,701 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.181.01 ERROR 2025-06-26 15:46:24,702 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.181.01 ERROR 2025-06-26 15:46:24,702 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.181.01 INFO 2025-06-26 15:46:24,712 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_cal.nc INFO 2025-06-26 15:46:24,759 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:46:24,766 process.py align():251 [1] Alignment steps for 2010.181.01 INFO 2025-06-26 15:46:24,790 align.py process_cal():139 [1] Processing dorado_2010.181.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.181.01 INFO 2025-06-26 15:46:24,797 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:24,799 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:24,814 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:24,816 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:24,829 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:24,831 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:24,839 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:46:24,839 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:46:24,845 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:24,847 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:24,860 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,862 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,875 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,877 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,891 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,893 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,907 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,909 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,922 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,924 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,937 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,939 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,953 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,955 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,969 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,972 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:24,986 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:24,988 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,001 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,003 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,017 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,019 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,033 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,035 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,049 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,051 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,064 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,066 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,080 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,082 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,096 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,098 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,112 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,114 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,128 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,130 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,144 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,146 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,160 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,162 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,176 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,178 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,192 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:25,194 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:25,213 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:25,229 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:25,245 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:25,260 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:46:25,274 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_align.nc INFO 2025-06-26 15:46:25,318 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:46:25,321 process.py resample():273 [1] Resampling steps for 2010.181.01 INFO 2025-06-26 15:46:25,322 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:46:25,346 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_align.nc mission netCDF file INFO 2025-06-26 15:46:25,350 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_align.nc mission netCDF file INFO 2025-06-26 15:46:25,351 resample.py get_mission_start_end():1145 [1] navigation: 2010-06-30T15:56:30.080846592 to 2010-06-30T16:27:01.505385472 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:46:25,352 resample.py get_mission_start_end():1145 [1] hs2 : 2010-06-30T15:55:52.253437952 to 2010-06-30T16:27:01.385393664 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 15:46:25,353 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-06-30T15:56:45.129815552 to 2010-06-30T16:27:01.325397760 (0 days 00:00:00.239983616 before mission_end) INFO 2025-06-26 15:46:25,355 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-06-30T15:56:12.852026880 to 2010-06-30T16:27:01.565381376 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:46:25,356 resample.py get_mission_start_end():1145 [1] isus : 2010-06-30T15:56:58.028932096 to 2010-06-30T16:27:00.905426432 (0 days 00:00:00.659954944 before mission_end) INFO 2025-06-26 15:46:25,357 resample.py get_mission_start_end():1145 [1] tailcone : 2010-06-30T15:55:46.363841536 to 2010-06-30T16:27:01.565381376 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:46:25,358 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_align.nc mission netCDF file INFO 2025-06-26 15:46:25,358 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,405 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,417 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,428 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,438 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,449 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,460 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,470 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,480 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,489 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,498 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,507 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,517 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,526 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,536 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,544 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,553 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,562 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,572 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,583 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,594 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,604 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,614 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,624 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,635 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,649 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,658 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,666 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,677 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:25,789 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_1S.nc INFO 2025-06-26 15:46:27,197 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:46:27,361 create_products.py gulper_odv():522 [1] Wrote 1 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.181.01/dorado_2010.181.01_1S_Gulper.txt INFO 2025-06-26 15:46:27,361 process.py archive():337 [1] Archiving steps for 2010.181.01 INFO 2025-06-26 15:46:27,361 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:46:27,363 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:46:27,363 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.01_1S.nc INFO 2025-06-26 15:46:27,370 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:46:27,371 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.01_cal.nc INFO 2025-06-26 15:46:27,385 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:46:27,386 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.01_align.nc INFO 2025-06-26 15:46:27,400 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:46:27,408 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,416 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,420 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,427 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,437 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,442 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,448 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,456 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,461 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.01 done. INFO 2025-06-26 15:46:27,461 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:46:27,462 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.181.01_1S_Gulper.txt INFO 2025-06-26 15:46:27,467 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.181.01/dorado_2010.181.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:46:27,467 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.01/dorado_2010.181.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf