INFO 2025-06-26 15:33:35,001 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:33:35,001 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Processing requested by Yanwu (Kevin helped with SSDS ingest/portal) - ctdToUse = ctd1 INFO 2025-06-26 15:33:35,001 process.py process_mission():449 [1] Processing AUVCTD mission 2010.083.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:33:35,001 process.py download_process():165 [1] Download and processing steps for 2010.083.03 INFO 2025-06-26 15:33:35,001 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010083/2010.083.03 INFO 2025-06-26 15:33:35,001 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010083/2010.083.03 to /data/auv_data/dorado/missionlogs/2010.083.03 INFO 2025-06-26 15:33:37,527 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.083.03 INFO 2025-06-26 15:33:37,528 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/ctdDriver.log (4151142 bytes) INFO 2025-06-26 15:33:37,831 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.083.03/ctdDriver.log: [ 88 91 1107 2040 4601 4851 5904 12032 19686 23202 25184 34545 41431] INFO 2025-06-26 15:33:37,842 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/ctdDriver2.log (4150751 bytes) INFO 2025-06-26 15:33:38,134 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.083.03/ctdDriver2.log: [ 86 89 519 1106 4848 5901 12030 17051 19683 25180 34535 34541 41428] INFO 2025-06-26 15:33:38,148 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/gps.log (65660 bytes) INFO 2025-06-26 15:33:38,164 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/hydroscatlog.log (3638230 bytes) INFO 2025-06-26 15:33:38,543 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.083.03/hydroscatlog.log: [ 72 75 172 392 620 699 1133 1693 1872 2222 2477 2524 3059 3149 4646 4999 5280 7456 7513 8086 8918 9618 11156 12112 13285 18190 19762 25714 37862 39583 41439 42619] INFO 2025-06-26 15:33:38,553 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/navigation.log (12694330 bytes) INFO 2025-06-26 15:33:39,467 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/isuslog.log (268597 bytes) INFO 2025-06-26 15:33:39,497 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.083.03/isuslog.log: [ 1 2 3 4 5 6 7 8 10 11 12 13 14 15 16 17 18 19] INFO 2025-06-26 15:33:39,498 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/parosci.log (4229174 bytes) INFO 2025-06-26 15:33:39,865 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/tailCone.log (2589307 bytes) INFO 2025-06-26 15:33:40,198 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.67 seconds INFO 2025-06-26 15:33:40,198 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.083.03/lopc.bin (7334616 bytes) INFO 2025-06-26 15:33:40,199 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:33:40 2025 INFO 2025-06-26 15:33:40,199 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.083.03/parosci.nc INFO 2025-06-26 15:33:40,199 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:33:40,199 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.083.03/parosci.nc INFO 2025-06-26 15:33:40,202 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1269444694.8, sensor_off_time = 1269455530.6 INFO 2025-06-26 15:33:40,202 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10835 seconds. Expecting to read 21670 L frames from the lopc.bin file. INFO 2025-06-26 15:33:40,202 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21670 records from the lopc.bin file. INFO 2025-06-26 15:33:40,332 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-03-24 15:31:34 Z and endTime = 2010-03-24 18:32:10 Z with 21670 records expected to be read from lopc.bin INFO 2025-06-26 15:33:40,333 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.083.03/lopc.bin INFO 2025-06-26 15:33:40,333 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.083.03/lopc.nc INFO 2025-06-26 15:33:40,333 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.083.03/lopc.nc INFO 2025-06-26 15:33:40,334 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.083.03 INFO 2025-06-26 15:33:40,334 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:33:40,337 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0241864 WARNING 2025-06-26 15:33:40,337 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:33:40,381 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:33:40,381 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:33:40,381 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:33:44,155 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 14384 8761 0 0 0 0 89 3.8 seconds, last L Frame: 21670 INFO 2025-06-26 15:33:47,968 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 24464 16834 0 0 0 0 169 3.8 seconds, last L Frame: 21670 INFO 2025-06-26 15:33:48,552 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:33:48,552 lopcToNetCDF.py main():2346 [1] lFrameCount = 21496, mFrameCount = 17786 INFO 2025-06-26 15:33:48,552 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.083.03/parosci.nc INFO 2025-06-26 15:33:48,552 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:33:48,552 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.083.03/parosci.nc INFO 2025-06-26 15:33:48,556 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1269444694.8, sensor_off_time = 1269455530.6 INFO 2025-06-26 15:33:48,556 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10835 seconds. Expecting to read 21670 L frames from the lopc.bin file. INFO 2025-06-26 15:33:48,556 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21670 records from the lopc.bin file. INFO 2025-06-26 15:33:48,556 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 2987 and len(sampleCountList) = 21671 INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 2987 2988 2989 ... 25973 25974 25975] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [4] INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 4300 at index = 4 INFO 2025-06-26 15:33:48,558 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 2987 2988 2989 ... 25973 25974 25975] INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 2987 2988 2989 ... 25973 25974 25975] with len(correctedSampleCountList) = 21671 INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 2987 from all values of correctedSampleCountList INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.14930e+04 1.14935e+04 1.14940e+04] INFO 2025-06-26 15:33:48,559 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.26944469e+09 1.26944470e+09 1.26944470e+09 ... 1.26945619e+09 1.26945619e+09 1.26945619e+09] INFO 2025-06-26 15:33:48,560 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1269444694.8 1269444695.3, ..., timestampArray[-2:] = 1269456188.3 1269456188.8] INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1269444694.8330216), np.float64(1269444695.3330216)], ..., timestampList[-2:] = [np.float64(1269456188.3330216), np.float64(1269456188.8330216)]] INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 21671) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [21461, 21482] INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 1023 INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 21671 INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1269444694.8330216), np.float64(1269444695.3330216)], ..., timestampList[-2:] = [np.float64(1269456188.3330216), np.float64(1269456188.8330216)]] INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 21671) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:33:48,582 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(21460), np.int32(21481)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:33:48,583 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 1023 INFO 2025-06-26 15:33:48,584 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 15:33:48,600 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 1023 INFO 2025-06-26 15:33:48,600 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1269445358.8330216)], ..., tsList[-2:] = [np.float64(1269456083.8330216), np.float64(1269456094.3330216)] INFO 2025-06-26 15:33:48,600 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-03-24 15:42:38 Z INFO 2025-06-26 15:33:48,600 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-03-24 18:41:34 Z INFO 2025-06-26 15:33:48,601 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1023 INFO 2025-06-26 15:33:48,601 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.26944687e+09], ..., cFrameEsecsList[-2:] = [1.26945553e+09 1.26945553e+09] INFO 2025-06-26 15:33:48,601 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-03-24 16:07:51 Z INFO 2025-06-26 15:33:48,601 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-03-24 18:32:09 Z INFO 2025-06-26 15:33:48,605 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.083.03/lopc.nc INFO 2025-06-26 15:33:48,605 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:33:48 2025 Elapsed processing time from start of processing = 8 seconds INFO 2025-06-26 15:33:48,606 process.py calibrate():227 [1] Calibration steps for 2010.083.03 INFO 2025-06-26 15:33:48,815 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:33:48,817 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:33:49,463 calibrate.py _nudge_pos():1806 [1] 107: 0.140 0.0001624 0.0002138 2470 8.36 2.883 4.737 2010-03-24T15:41:40.151554560 INFO 2025-06-26 15:33:49,990 calibrate.py _nudge_pos():1806 [1] 163: 0.140 -0.0056932 -0.0034583 15536 51.98 -16.256 -12.328 2010-03-24T16:34:34.154120448 INFO 2025-06-26 15:33:50,487 calibrate.py _nudge_pos():1806 [1] 214: 0.150 -0.0039032 -0.0030316 13856 46.26 -12.522 -12.143 2010-03-24T17:21:40.150526464 INFO 2025-06-26 15:33:51,107 calibrate.py _nudge_pos():1806 [1] 278: 0.140 -0.0036819 -0.0016196 10921 36.45 -14.993 -8.234 2010-03-24T17:59:10.156390400 INFO 2025-06-26 15:33:51,601 calibrate.py _nudge_pos():1806 [1] 329: 0.150 0.0011730 -0.0007994 6794 22.66 7.682 -6.536 2010-03-24T18:22:40.149799424 INFO 2025-06-26 15:33:57,040 calibrate.py _nudge_pos():1862 [1] 850: - - - 2 0.00 - - INFO 2025-06-26 15:33:57,040 calibrate.py _nudge_pos():1868 [1] Points in final series = 53781 WARNING 2025-06-26 15:33:57,111 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:34:02,889 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:34:05,976 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:34:06,296 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:34:06,298 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.083.03/ctd1.nc INFO 2025-06-26 15:34:06,299 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:34:06,299 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:34:06,299 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:34:08,685 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:34:09,010 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:34:09,012 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.083.03/ctd2.nc INFO 2025-06-26 15:34:09,013 calibrate.py _range_qc_combined_nc():898 [1] Setting 171 ctd2_salinity values to NaN INFO 2025-06-26 15:34:09,014 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:34:09,014 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:34:09,422 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.083.03 ERROR 2025-06-26 15:34:09,431 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.083.03 INFO 2025-06-26 15:34:09,475 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_cal.nc INFO 2025-06-26 15:34:14,211 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:34:14,217 process.py align():251 [1] Alignment steps for 2010.083.03 INFO 2025-06-26 15:34:14,245 align.py process_cal():139 [1] Processing dorado_2010.083.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.083.03 INFO 2025-06-26 15:34:14,264 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:34:14,266 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:34:14,307 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:34:14,311 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:34:14,352 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:34:14,356 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:34:14,379 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:34:14,380 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:34:14,395 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:34:14,399 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:34:14,440 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,443 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,480 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,484 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,521 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,524 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,559 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,562 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,600 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,604 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,642 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,646 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,684 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,689 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,728 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,731 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,768 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,772 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,808 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,811 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,848 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,851 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,887 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,891 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,928 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,931 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:14,968 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:14,971 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,009 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,013 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,050 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,054 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,092 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,096 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,132 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,135 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,172 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,176 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,213 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,216 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,254 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,258 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,295 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.083.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:34:15,299 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:34:15,343 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:34:15,375 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:34:15,407 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:34:15,439 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:34:15,469 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:34:15,497 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:34:15,527 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:34:15,557 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:34:15,587 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:34:15,618 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_align.nc INFO 2025-06-26 15:34:15,683 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:34:15,685 process.py resample():273 [1] Resampling steps for 2010.083.03 INFO 2025-06-26 15:34:15,686 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:34:15,710 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_align.nc mission netCDF file INFO 2025-06-26 15:34:15,715 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_align.nc mission netCDF file INFO 2025-06-26 15:34:15,716 resample.py get_mission_start_end():1145 [1] navigation: 2010-03-24T15:32:23.029720064 to 2010-03-24T18:32:10.550724352 (0 days 00:09:23.782297344 before mission_end) WARNING 2025-06-26 15:34:15,717 resample.py get_mission_start_end():1156 [1] Instrument navigation has a gap > 5 minutes at the end of the mission: 0 days 00:09:23.782297344 INFO 2025-06-26 15:34:15,718 resample.py get_mission_start_end():1145 [1] hs2 : 2010-03-24T15:31:41.232583168 to 2010-03-24T18:32:10.620719360 (0 days 00:09:23.712302336 before mission_end) WARNING 2025-06-26 15:34:15,719 resample.py get_mission_start_end():1156 [1] Instrument hs2 has a gap > 5 minutes at the end of the mission: 0 days 00:09:23.712302336 INFO 2025-06-26 15:34:15,720 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-03-24T15:32:00.911235072 to 2010-03-24T18:32:10.670716160 (0 days 00:09:23.662305536 before mission_end) WARNING 2025-06-26 15:34:15,721 resample.py get_mission_start_end():1156 [1] Instrument ctd1 has a gap > 5 minutes at the end of the mission: 0 days 00:09:23.662305536 INFO 2025-06-26 15:34:15,722 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-03-24T15:32:00.961231616 to 2010-03-24T18:32:10.710713088 (0 days 00:09:23.622308608 before mission_end) WARNING 2025-06-26 15:34:15,723 resample.py get_mission_start_end():1156 [1] Instrument ctd2 has a gap > 5 minutes at the end of the mission: 0 days 00:09:23.622308608 INFO 2025-06-26 15:34:15,724 resample.py get_mission_start_end():1145 [1] isus : 2010-03-24T15:32:33.059032832 to 2010-03-24T18:32:09.930766592 (0 days 00:09:24.402255104 before mission_end) WARNING 2025-06-26 15:34:15,724 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 00:09:24.402255104 INFO 2025-06-26 15:34:15,725 resample.py get_mission_start_end():1145 [1] lopc : 2010-03-24T15:42:38.833021696 to 2010-03-24T18:41:34.333021696 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:34:15,727 resample.py get_mission_start_end():1145 [1] tailcone : 2010-03-24T15:31:33.243130624 to 2010-03-24T18:32:10.650717184 (0 days 00:09:23.682304512 before mission_end) WARNING 2025-06-26 15:34:15,728 resample.py get_mission_start_end():1156 [1] Instrument tailcone has a gap > 5 minutes at the end of the mission: 0 days 00:09:23.682304512 INFO 2025-06-26 15:34:15,728 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_align.nc mission netCDF file INFO 2025-06-26 15:34:15,728 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,857 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,858 resample.py resample_variable():1038 [1] Padding navigation_roll with 0 days 00:09:23.782297344 of NaNs to the end of mission INFO 2025-06-26 15:34:15,885 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,885 resample.py resample_variable():1038 [1] Padding navigation_pitch with 0 days 00:09:23.782297344 of NaNs to the end of mission INFO 2025-06-26 15:34:15,913 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,913 resample.py resample_variable():1038 [1] Padding navigation_yaw with 0 days 00:09:23.782297344 of NaNs to the end of mission INFO 2025-06-26 15:34:15,938 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,938 resample.py resample_variable():1038 [1] Padding navigation_mWaterSpeed with 0 days 00:09:23.782297344 of NaNs to the end of mission INFO 2025-06-26 15:34:15,961 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,961 resample.py resample_variable():1038 [1] Padding hs2_bbp420 with 0 days 00:09:23.712302336 of NaNs to the end of mission INFO 2025-06-26 15:34:15,984 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:15,984 resample.py resample_variable():1038 [1] Padding hs2_bbp700 with 0 days 00:09:23.712302336 of NaNs to the end of mission INFO 2025-06-26 15:34:16,007 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,007 resample.py resample_variable():1038 [1] Padding hs2_fl700 with 0 days 00:09:23.712302336 of NaNs to the end of mission INFO 2025-06-26 15:34:16,029 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,029 resample.py resample_variable():1038 [1] Padding ctd1_temperature with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,050 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,051 resample.py resample_variable():1038 [1] Padding ctd1_conductivity with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,072 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,072 resample.py resample_variable():1038 [1] Padding ctd1_salinity with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,094 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,094 resample.py resample_variable():1038 [1] Padding ctd1_temperature_onboard with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,116 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,116 resample.py resample_variable():1038 [1] Padding ctd1_conductivity_onboard with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,137 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,137 resample.py resample_variable():1038 [1] Padding ctd1_salinity_onboard with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,157 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,157 resample.py resample_variable():1038 [1] Padding ctd1_dissolvedO2 with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,178 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,178 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_mll with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,198 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,198 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_umolkg with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,219 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,219 resample.py resample_variable():1038 [1] Padding ctd1_flow1 with 0 days 00:09:23.662305536 of NaNs to the end of mission INFO 2025-06-26 15:34:16,242 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,242 resample.py resample_variable():1038 [1] Padding ctd2_temperature with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,264 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,264 resample.py resample_variable():1038 [1] Padding ctd2_conductivity with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,287 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,287 resample.py resample_variable():1038 [1] Padding ctd2_salinity with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,309 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,309 resample.py resample_variable():1038 [1] Padding ctd2_temperature_onboard with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,331 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,331 resample.py resample_variable():1038 [1] Padding ctd2_conductivity_onboard with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,354 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,354 resample.py resample_variable():1038 [1] Padding ctd2_salinity_onboard with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,376 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,376 resample.py resample_variable():1038 [1] Padding ctd2_flow2 with 0 days 00:09:23.622308608 of NaNs to the end of mission INFO 2025-06-26 15:34:16,391 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,391 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 00:09:24.402255104 of NaNs to the end of mission INFO 2025-06-26 15:34:16,404 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,404 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 00:09:24.402255104 of NaNs to the end of mission INFO 2025-06-26 15:34:16,416 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,416 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 00:09:24.402255104 of NaNs to the end of mission INFO 2025-06-26 15:34:16,427 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,436 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,445 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,453 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,462 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,485 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:34:16,485 resample.py resample_variable():1038 [1] Padding tailcone_propRpm with 0 days 00:09:23.682304512 of NaNs to the end of mission INFO 2025-06-26 15:34:16,672 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_1S.nc INFO 2025-06-26 15:34:19,146 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:34:20,244 create_products.py gulper_odv():522 [1] Wrote 1 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.083.03/dorado_2010.083.03_1S_Gulper.txt INFO 2025-06-26 15:34:20,244 process.py archive():337 [1] Archiving steps for 2010.083.03 INFO 2025-06-26 15:34:20,244 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03, BASE_PATH = /data/auv_data INFO 2025-06-26 15:34:20,244 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:34:20,245 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.083.03_1S.nc INFO 2025-06-26 15:34:20,259 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:34:20,260 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.083.03_cal.nc INFO 2025-06-26 15:34:20,311 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:34:20,312 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.083.03_align.nc INFO 2025-06-26 15:34:20,363 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:34:20,383 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,399 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,404 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,421 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,456 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,462 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,476 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,491 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,527 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010083/2010.083.03 done. INFO 2025-06-26 15:34:20,527 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:34:20,528 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.083.03_1S_Gulper.txt INFO 2025-06-26 15:34:20,533 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.083.03/dorado_2010.083.03_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:34:20,533 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.083.03/dorado_2010.083.03_processing.log /Volumes/AUVCTD/surveys/2010/netcdf