INFO 2025-06-26 15:31:03,561 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:31:03,561 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Autonomy mission Last mission with the UCSB biolume sensor - ctdToUse = ctd1 INFO 2025-06-26 15:31:03,561 process.py process_mission():449 [1] Processing AUVCTD mission 2010.081.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:31:03,561 process.py download_process():165 [1] Download and processing steps for 2010.081.02 INFO 2025-06-26 15:31:03,561 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010081/2010.081.02 INFO 2025-06-26 15:31:03,561 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010081/2010.081.02 to /data/auv_data/dorado/missionlogs/2010.081.02 INFO 2025-06-26 15:31:07,011 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.081.02 INFO 2025-06-26 15:31:07,011 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/ctdDriver.log (4981542 bytes) INFO 2025-06-26 15:31:07,376 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.081.02/ctdDriver.log: [ 8 85 140 536 540 608 990 1107 1249 1366 1608 1976 2169 3828 4440 5564 7764 8132 8134 10593 12643 15903 17558 23972 24005 24308 25094 25520 25870 26230 26312 26802 29801 32946 34218 34870 36574 42618 43970 48796] INFO 2025-06-26 15:31:07,391 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/ctdDriver2.log (4981439 bytes) INFO 2025-06-26 15:31:07,743 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.081.02/ctdDriver2.log: [ 7 84 534 538 606 988 1105 1247 1606 1974 3826 4438 5562 7761 8129 10590 12640 15901 17556 23971 24004 24253 24307 25093 25869 26229 26311 26801 34217 34869 36573 38286 42617 43969 48795 51265] INFO 2025-06-26 15:31:07,759 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/gps.log (78332 bytes) INFO 2025-06-26 15:31:07,776 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/hydroscatlog.log (4363570 bytes) INFO 2025-06-26 15:31:08,223 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.081.02/hydroscatlog.log: [ 1 371 381 701 904 915 1321 1414 1967 2658 3064 3348 3761 4005 4073 5630 5964 6131 6855 7181 8543 8775 8793 9094 9221 10661 11851 12051 13311 15970 16015 16566 16713 17626 17775 19768 19936 20257 22022 25360 25520 25583 26151 30390 31096 31557 34276 38647 39478 39591 41516 44807 51628] INFO 2025-06-26 15:31:08,235 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/navigation.log (15236522 bytes) INFO 2025-06-26 15:31:09,320 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/isuslog.log (341 bytes) INFO 2025-06-26 15:31:09,324 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/parosci.log (5069270 bytes) INFO 2025-06-26 15:31:09,758 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/tailCone.log (3101659 bytes) INFO 2025-06-26 15:31:10,152 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/biolume.log (3539404 bytes) INFO 2025-06-26 15:31:10,497 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 15:31:10,683 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.67 seconds INFO 2025-06-26 15:31:10,684 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.081.02/lopc.bin (8426663 bytes) INFO 2025-06-26 15:31:10,684 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:31:10 2025 INFO 2025-06-26 15:31:10,684 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.081.02/parosci.nc INFO 2025-06-26 15:31:10,684 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:31:10,684 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.081.02/parosci.nc INFO 2025-06-26 15:31:10,687 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1269276261.2, sensor_off_time = 1269289260.2 INFO 2025-06-26 15:31:10,688 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 12998 seconds. Expecting to read 25996 L frames from the lopc.bin file. INFO 2025-06-26 15:31:10,688 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 25996 records from the lopc.bin file. INFO 2025-06-26 15:31:10,842 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-03-22 16:44:21 Z and endTime = 2010-03-22 20:21:00 Z with 25996 records expected to be read from lopc.bin INFO 2025-06-26 15:31:10,842 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.081.02/lopc.bin INFO 2025-06-26 15:31:10,842 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.081.02/lopc.nc INFO 2025-06-26 15:31:10,843 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.081.02/lopc.nc INFO 2025-06-26 15:31:10,843 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.081.02 INFO 2025-06-26 15:31:10,843 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:31:10,880 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:31:10,880 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:31:10,880 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:31:14,509 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10080 7565 0 0 0 0 80 3.7 seconds, last L Frame: 25996 INFO 2025-06-26 15:31:18,158 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20177 14878 0 0 0 0 177 3.6 seconds, last L Frame: 25996 INFO 2025-06-26 15:31:20,434 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:31:20,434 lopcToNetCDF.py main():2346 [1] lFrameCount = 25770, mFrameCount = 19250 INFO 2025-06-26 15:31:20,434 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.081.02/parosci.nc INFO 2025-06-26 15:31:20,435 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:31:20,435 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.081.02/parosci.nc INFO 2025-06-26 15:31:20,438 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1269276261.2, sensor_off_time = 1269289260.2 INFO 2025-06-26 15:31:20,438 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 12998 seconds. Expecting to read 25996 L frames from the lopc.bin file. INFO 2025-06-26 15:31:20,438 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 25996 records from the lopc.bin file. INFO 2025-06-26 15:31:20,438 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 25983 INFO 2025-06-26 15:31:20,440 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:31:20,440 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 25992 25993 25994] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 25992 25993 25994] INFO 2025-06-26 15:31:20,441 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 25992 25993 25994] with len(correctedSampleCountList) = 25983 INFO 2025-06-26 15:31:20,442 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 15:31:20,442 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:31:20,442 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.29955e+04 1.29960e+04 1.29965e+04] INFO 2025-06-26 15:31:20,442 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.26927626e+09 1.26927626e+09 1.26927626e+09 ... 1.26928926e+09 1.26928926e+09 1.26928926e+09] INFO 2025-06-26 15:31:20,442 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1269276261.2 1269276261.7, ..., timestampArray[-2:] = 1269289257.2 1269289257.7] INFO 2025-06-26 15:31:20,469 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1269276261.231608), np.float64(1269276261.731608)], ..., timestampList[-2:] = [np.float64(1269289257.231608), np.float64(1269289257.731608)]] INFO 2025-06-26 15:31:20,469 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 25983) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:31:20,469 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [25745, 25766] INFO 2025-06-26 15:31:20,470 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 1227 INFO 2025-06-26 15:31:20,470 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 25983 INFO 2025-06-26 15:31:20,470 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1269276261.231608), np.float64(1269276261.731608)], ..., timestampList[-2:] = [np.float64(1269289257.231608), np.float64(1269289257.731608)]] INFO 2025-06-26 15:31:20,470 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 25983) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:31:20,470 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(25744), np.int32(25765)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:31:20,471 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 1227 INFO 2025-06-26 15:31:20,471 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 15:31:20,490 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 1227 INFO 2025-06-26 15:31:20,490 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1269276270.731608)], ..., tsList[-2:] = [np.float64(1269289138.731608), np.float64(1269289149.231608)] INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-03-22 16:44:30 Z INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-03-22 20:19:09 Z INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1227 INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.26927627e+09], ..., cFrameEsecsList[-2:] = [1.26928926e+09 1.26928926e+09] INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-03-22 16:44:33 Z INFO 2025-06-26 15:31:20,491 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-03-22 20:20:59 Z INFO 2025-06-26 15:31:20,495 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.081.02/lopc.nc INFO 2025-06-26 15:31:20,496 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:31:20 2025 Elapsed processing time from start of processing = 9 seconds INFO 2025-06-26 15:31:20,497 process.py calibrate():227 [1] Calibration steps for 2010.081.02 INFO 2025-06-26 15:31:20,646 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:31:20,648 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:31:21,375 calibrate.py _nudge_pos():1806 [1] 115: 0.160 0.0000047 -0.0000129 15 0.05 15.019 -51.214 2010-03-22T16:46:17.013676288 INFO 2025-06-26 15:31:21,403 calibrate.py _nudge_pos():1806 [1] 118: 0.160 0.0028039 -0.0012795 9684 32.55 12.787 -7.285 2010-03-22T17:18:52.009750016 INFO 2025-06-26 15:31:22,951 calibrate.py _nudge_pos():1806 [1] 276: 0.160 0.0009991 -0.0000316 9635 32.18 4.608 -0.182 2010-03-22T17:53:40.016711680 INFO 2025-06-26 15:31:24,560 calibrate.py _nudge_pos():1806 [1] 443: 0.170 0.0018828 -0.0004641 10162 33.93 8.235 -2.535 2010-03-22T18:30:22.015864320 INFO 2025-06-26 15:31:24,652 calibrate.py _nudge_pos():1806 [1] 452: 0.160 -0.0000298 0.0000474 15 0.05 -94.698 188.180 2010-03-22T18:30:33.015110656 INFO 2025-06-26 15:31:26,032 calibrate.py _nudge_pos():1806 [1] 598: 0.170 0.0028005 -0.0020170 10364 34.60 12.015 -10.803 2010-03-22T19:07:34.012962048 INFO 2025-06-26 15:31:26,071 calibrate.py _nudge_pos():1806 [1] 602: 0.170 0.0000300 -0.0000550 100 0.33 13.499 -30.867 2010-03-22T19:07:57.011386624 INFO 2025-06-26 15:31:27,737 calibrate.py _nudge_pos():1806 [1] 777: 0.180 -0.0004392 0.0000498 9525 31.80 -2.050 0.290 2010-03-22T19:42:40.008691456 INFO 2025-06-26 15:31:29,168 calibrate.py _nudge_pos():1806 [1] 929: 0.180 -0.0000039 -0.0000379 15 0.05 -12.547 -150.388 2010-03-22T19:45:15.018072576 INFO 2025-06-26 15:31:29,188 calibrate.py _nudge_pos():1806 [1] 931: 0.180 0.0028086 -0.0015931 9971 33.30 12.520 -8.866 2010-03-22T20:18:34.011132160 INFO 2025-06-26 15:31:29,526 calibrate.py _nudge_pos():1806 [1] 966: 0.190 -0.0000067 -0.0000165 15 0.05 -21.399 -65.604 2010-03-22T20:19:11.008597504 INFO 2025-06-26 15:31:30,570 calibrate.py _nudge_pos():1862 [1] 1027: - - - 1 0.00 - - INFO 2025-06-26 15:31:30,570 calibrate.py _nudge_pos():1868 [1] Points in final series = 64552 WARNING 2025-06-26 15:31:30,653 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:31:37,548 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:31:41,270 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:31:41,660 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:31:41,662 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.081.02/ctd1.nc INFO 2025-06-26 15:31:41,663 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:31:41,664 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:31:41,664 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:31:44,562 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:31:44,949 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:31:44,951 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.081.02/ctd2.nc INFO 2025-06-26 15:31:44,952 calibrate.py _range_qc_combined_nc():898 [1] Setting 158 ctd2_salinity values to NaN INFO 2025-06-26 15:31:44,952 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:31:44,952 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 15:31:44,968 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 15:31:45,611 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 773286 773287 773288] INFO 2025-06-26 15:31:45,726 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 15:31:45,731 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 15:31:45,740 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.081.02 INFO 2025-06-26 15:31:45,792 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_cal.nc INFO 2025-06-26 15:31:51,424 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:31:51,430 process.py align():251 [1] Alignment steps for 2010.081.02 INFO 2025-06-26 15:31:51,459 align.py process_cal():139 [1] Processing dorado_2010.081.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.081.02 INFO 2025-06-26 15:31:51,480 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:51,483 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:51,529 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:51,533 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:51,582 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:51,586 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:51,613 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:31:51,614 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:31:51,631 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:31:51,635 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:31:51,681 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,684 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:51,725 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,729 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:51,770 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,774 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:31:51,815 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,818 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:51,862 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,866 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:51,907 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,911 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:51,955 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:51,959 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,000 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,004 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,048 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,052 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,095 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,100 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,143 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,147 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,189 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,193 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,238 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,242 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,285 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,288 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,332 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,335 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,377 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,381 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,423 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,427 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,469 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,473 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,516 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,519 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,562 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,566 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,609 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,613 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,655 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.081.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:31:52,659 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:31:52,713 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.26 INFO 2025-06-26 15:31:52,745 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.26 INFO 2025-06-26 15:31:52,779 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.26 INFO 2025-06-26 15:31:52,813 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 15:31:52,851 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:31:52,885 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:31:52,919 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:31:52,953 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:31:52,987 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:31:53,023 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 15:31:53,059 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_align.nc INFO 2025-06-26 15:31:53,134 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:31:53,137 process.py resample():273 [1] Resampling steps for 2010.081.02 INFO 2025-06-26 15:31:53,138 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:31:53,166 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_align.nc mission netCDF file INFO 2025-06-26 15:31:53,173 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_align.nc mission netCDF file INFO 2025-06-26 15:31:53,174 resample.py get_mission_start_end():1145 [1] navigation: 2010-03-22T16:45:09.838278144 to 2010-03-22T20:21:00.221116160 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:31:53,176 resample.py get_mission_start_end():1145 [1] hs2 : 2010-03-22T16:44:30.840949504 to 2010-03-22T20:21:00.071126528 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 15:31:53,178 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-03-22T16:44:48.359749632 to 2010-03-22T20:21:00.081125632 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 15:31:53,179 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-03-22T16:44:48.369748736 to 2010-03-22T20:21:00.061127168 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 15:31:53,181 resample.py get_mission_start_end():1145 [1] isus : 2010-03-22T16:45:26.767118336 to 2010-03-22T16:45:34.316601344 (0 days 03:35:25.904514816 before mission_end) WARNING 2025-06-26 15:31:53,182 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 03:35:25.904514816 INFO 2025-06-26 15:31:53,183 resample.py get_mission_start_end():1145 [1] biolume : 2010-03-22T16:44:19.771673600 to 2010-03-22T20:20:59.041162752 (0 days 00:00:01.179953408 before mission_end) INFO 2025-06-26 15:31:53,184 resample.py get_mission_start_end():1145 [1] lopc : 2010-03-22T16:44:30.731607808 to 2010-03-22T20:19:09.231607808 (0 days 00:01:50.989508352 before mission_end) INFO 2025-06-26 15:31:53,186 resample.py get_mission_start_end():1145 [1] tailcone : 2010-03-22T16:44:21.951558656 to 2010-03-22T20:21:00.221116160 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:31:53,187 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_align.nc mission netCDF file INFO 2025-06-26 15:31:53,187 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,345 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,372 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,400 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,426 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,452 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,476 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,500 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,524 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,547 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,570 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,593 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,615 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,637 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,658 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,680 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,702 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,723 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,748 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,772 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,798 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,821 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,844 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,867 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,889 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,900 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,900 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 03:35:25.904514816 of NaNs to the end of mission INFO 2025-06-26 15:31:53,910 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,911 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 03:35:25.904514816 of NaNs to the end of mission INFO 2025-06-26 15:31:53,920 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,920 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 03:35:25.904514816 of NaNs to the end of mission INFO 2025-06-26 15:31:53,933 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,944 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,953 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,962 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,971 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:53,980 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:54,006 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:31:54,189 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_1S.nc INFO 2025-06-26 15:31:56,097 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:32:00,841 create_products.py gulper_odv():522 [1] Wrote 4 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.081.02/dorado_2010.081.02_1S_Gulper.txt INFO 2025-06-26 15:32:00,841 process.py archive():337 [1] Archiving steps for 2010.081.02 INFO 2025-06-26 15:32:00,841 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02, BASE_PATH = /data/auv_data INFO 2025-06-26 15:32:00,842 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:32:00,844 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.081.02_1S.nc INFO 2025-06-26 15:32:00,859 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:32:00,861 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.081.02_cal.nc INFO 2025-06-26 15:32:00,916 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:32:00,917 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.081.02_align.nc INFO 2025-06-26 15:32:00,971 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:32:00,992 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,010 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,015 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,031 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,069 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,074 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,090 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,105 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,142 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,187 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010081/2010.081.02 done. INFO 2025-06-26 15:32:01,187 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:32:01,191 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.081.02_1S_Gulper.txt INFO 2025-06-26 15:32:01,196 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.081.02/dorado_2010.081.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:32:01,196 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.081.02/dorado_2010.081.02_processing.log /Volumes/AUVCTD/surveys/2010/netcdf