INFO 2025-06-26 11:05:21,476 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:05:21,476 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 12/14/05 - ctdToUse = ctd1 INFO 2025-06-26 11:05:21,476 process.py process_mission():449 [1] Processing AUVCTD mission 2005.348.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:05:21,476 process.py download_process():165 [1] Download and processing steps for 2005.348.00 INFO 2025-06-26 11:05:21,477 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005348/2005.348.00 INFO 2025-06-26 11:05:21,477 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005348/2005.348.00 to /data/auv_data/dorado/missionlogs/2005.348.00 INFO 2025-06-26 11:05:24,243 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.348.00 INFO 2025-06-26 11:05:24,244 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/ctdDriver.log (6748499 bytes) INFO 2025-06-26 11:05:24,752 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/ctdDriver2.log (6748405 bytes) INFO 2025-06-26 11:05:25,319 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/gps.log (53780 bytes) INFO 2025-06-26 11:05:25,334 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/hydroscatlog.log (4605374 bytes) INFO 2025-06-26 11:05:25,880 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.348.00/hydroscatlog.log: [ 3 4 3212 3213 59447 59449] INFO 2025-06-26 11:05:25,891 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/navigation.log (22628514 bytes) INFO 2025-06-26 11:05:27,478 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/isuslog.log (386933 bytes) INFO 2025-06-26 11:05:27,519 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.348.00/isuslog.log: [2 3 4 5 6 7] INFO 2025-06-26 11:05:27,520 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/parosci.log (9873158 bytes) INFO 2025-06-26 11:05:28,335 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.348.00/parosci.log: [ 2812 2813 4198 4199 6288 6289 14139 157478 157479 157480 157481 157483 157484] INFO 2025-06-26 11:05:28,359 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/tailCone.log (4607755 bytes) INFO 2025-06-26 11:05:28,918 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.348.00/biolume.log (5225532 bytes) INFO 2025-06-26 11:05:29,415 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:05:29,680 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.44 seconds WARNING 2025-06-26 11:05:29,681 process.py download_process():196 [1] No lopc.bin file for 2005.348.00 INFO 2025-06-26 11:05:29,681 process.py calibrate():227 [1] Calibration steps for 2005.348.00 INFO 2025-06-26 11:05:29,851 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:05:29,853 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:05:31,554 calibrate.py _nudge_pos():1806 [1] 195: 0.180 0.0006918 0.0007990 2780 9.26 11.092 15.983 2005-12-14T17:36:47.645046016 INFO 2025-06-26 11:05:32,252 calibrate.py _nudge_pos():1806 [1] 267: 0.180 0.0020141 0.0019152 11885 39.61 7.551 8.959 2005-12-14T18:17:35.647346304 INFO 2025-06-26 11:05:32,814 calibrate.py _nudge_pos():1806 [1] 326: 0.190 0.0022021 0.0000186 12370 41.23 7.931 0.084 2005-12-14T18:59:47.653891840 INFO 2025-06-26 11:05:33,328 calibrate.py _nudge_pos():1806 [1] 379: 0.180 0.0025131 -0.0003080 12211 40.71 9.166 -1.402 2005-12-14T19:41:23.652904320 INFO 2025-06-26 11:05:33,926 calibrate.py _nudge_pos():1806 [1] 441: 0.180 0.0042315 -0.0001376 11544 38.48 16.329 -0.663 2005-12-14T20:20:53.650548224 INFO 2025-06-26 11:05:34,457 calibrate.py _nudge_pos():1806 [1] 496: 0.190 0.0045042 0.0002224 11730 39.10 17.104 1.054 2005-12-14T21:00:53.646137216 INFO 2025-06-26 11:05:35,206 calibrate.py _nudge_pos():1806 [1] 571: 0.190 0.0042011 0.0011037 11658 38.86 16.048 5.263 2005-12-14T21:40:59.651314688 INFO 2025-06-26 11:05:35,895 calibrate.py _nudge_pos():1806 [1] 642: 0.020 0.0037925 0.0006859 11560 38.53 14.610 3.298 2005-12-14T22:20:41.848123136 INFO 2025-06-26 11:05:36,583 calibrate.py _nudge_pos():1806 [1] 712: 0.190 0.0026236 -0.0009456 6615 22.05 17.664 -7.948 2005-12-14T22:43:53.652777856 INFO 2025-06-26 11:05:36,823 calibrate.py _nudge_pos():1862 [1] 712: - - - 5 0.01 - - INFO 2025-06-26 11:05:36,823 calibrate.py _nudge_pos():1868 [1] Points in final series = 95784 WARNING 2025-06-26 11:05:40,191 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:05:50,454 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 2 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:51,189 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:51,763 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:51,766 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.348.00/ctd1.nc INFO 2025-06-26 11:05:51,767 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 11:05:51,768 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:05:51,768 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:05:52,460 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:53,066 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:53,068 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.348.00/ctd2.nc INFO 2025-06-26 11:05:53,069 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 11:05:53,070 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:05:53,070 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:05:53,657 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:05:54,559 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 64860 69780 179340 180120 291780 292200 294420 295620 518400] INFO 2025-06-26 11:05:54,735 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:05:54,741 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:05:54,741 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.348.00 ERROR 2025-06-26 11:05:54,742 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.348.00 INFO 2025-06-26 11:05:54,817 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_cal.nc INFO 2025-06-26 11:05:54,910 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:05:54,914 process.py align():251 [1] Alignment steps for 2005.348.00 INFO 2025-06-26 11:05:54,943 align.py process_cal():139 [1] Processing dorado_2005.348.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.348.00 INFO 2025-06-26 11:05:54,972 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:54,976 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:55,053 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:55,058 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:55,129 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:55,136 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:55,180 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:05:55,180 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:05:55,207 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:55,211 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:55,278 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:55,282 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,342 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:55,346 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,405 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:55,409 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,468 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,472 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,534 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,538 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,597 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,601 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,660 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,664 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,727 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,787 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,791 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,851 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,855 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,919 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:55,979 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:55,983 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,046 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,050 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,111 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,115 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,174 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,178 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,244 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,249 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,309 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,313 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,372 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,376 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,436 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,440 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,500 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.348.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:56,503 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:56,580 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:56,631 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:56,684 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:56,738 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:05:56,795 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:56,842 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_align.nc INFO 2025-06-26 11:05:56,920 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:05:56,922 process.py resample():273 [1] Resampling steps for 2005.348.00 INFO 2025-06-26 11:05:56,922 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:05:56,948 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_align.nc mission netCDF file INFO 2025-06-26 11:05:56,953 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_align.nc mission netCDF file INFO 2025-06-26 11:05:56,955 resample.py get_mission_start_end():1145 [1] navigation: 2005-12-14T17:24:40.854834304 to 2005-12-14T22:44:16.851188608 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:05:56,956 resample.py get_mission_start_end():1145 [1] hs2 : 2005-12-14T17:24:22.636082432 to 2005-12-14T22:44:16.671201024 (0 days 00:00:00.179987584 before mission_end) INFO 2025-06-26 11:05:56,958 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-12-14T17:24:45.544513280 to 2005-12-14T22:44:16.821190784 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 11:05:56,959 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-12-14T17:24:45.524514432 to 2005-12-14T22:44:16.821190784 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 11:05:56,961 resample.py get_mission_start_end():1145 [1] isus : 2005-12-14T17:25:21.652039552 to 2005-12-14T22:44:15.401288064 (0 days 00:00:01.449900544 before mission_end) INFO 2025-06-26 11:05:56,962 resample.py get_mission_start_end():1145 [1] biolume : 2005-12-14T17:24:17.876374272 to 2005-12-14T22:44:15.821224960 (0 days 00:00:01.029963648 before mission_end) INFO 2025-06-26 11:05:56,964 resample.py get_mission_start_end():1145 [1] tailcone : 2005-12-14T17:24:18.996331904 to 2005-12-14T22:44:16.781193472 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 11:05:56,964 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_align.nc mission netCDF file INFO 2025-06-26 11:05:56,965 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,181 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,218 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,254 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,289 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,321 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,353 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,384 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,414 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,443 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,472 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,501 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,531 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,560 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,590 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,620 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,649 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,682 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,713 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,744 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,776 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,807 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,838 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,854 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,867 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,880 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,895 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:57,930 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:58,137 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_1S.nc INFO 2025-06-26 11:06:00,589 create_products.py gulper_odv():401 [1] No gulper times found for 2005.348.00 INFO 2025-06-26 11:06:00,590 process.py archive():337 [1] Archiving steps for 2005.348.00 INFO 2025-06-26 11:06:00,590 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00, BASE_PATH = /data/auv_data INFO 2025-06-26 11:06:00,590 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:06:00,591 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.348.00_1S.nc INFO 2025-06-26 11:06:00,613 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:06:00,614 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.348.00_cal.nc INFO 2025-06-26 11:06:00,707 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:06:00,708 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.348.00_align.nc INFO 2025-06-26 11:06:00,788 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:06:00,813 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,836 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,840 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,856 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,916 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,922 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,948 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:00,968 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:01,028 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005348/2005.348.00 done. INFO 2025-06-26 11:06:01,028 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:06:01,028 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.348.00/dorado_2005.348.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf