INFO 2025-06-26 11:04:30,135 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:04:30,135 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 11/28/05 - ctdToUse = ctd1 INFO 2025-06-26 11:04:30,135 process.py process_mission():449 [1] Processing BIOLUME mission 2005.342.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:04:30,135 process.py download_process():165 [1] Download and processing steps for 2005.342.00 INFO 2025-06-26 11:04:30,135 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005342/2005.342.00 INFO 2025-06-26 11:04:30,135 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005342/2005.342.00 to /data/auv_data/dorado/missionlogs/2005.342.00 INFO 2025-06-26 11:04:33,033 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.342.00 INFO 2025-06-26 11:04:33,034 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/ctdDriver.log (7952603 bytes) INFO 2025-06-26 11:04:33,621 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/ctdDriver2.log (7952949 bytes) INFO 2025-06-26 11:04:34,173 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.342.00/ctdDriver2.log: [11373] INFO 2025-06-26 11:04:34,195 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/gps.log (63140 bytes) INFO 2025-06-26 11:04:34,210 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/hydroscatlog.log (5426474 bytes) INFO 2025-06-26 11:04:34,835 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.342.00/hydroscatlog.log: [78032 78033] INFO 2025-06-26 11:04:34,847 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/navigation.log (26658686 bytes) INFO 2025-06-26 11:04:36,742 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/isuslog.log (456277 bytes) INFO 2025-06-26 11:04:36,789 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.342.00/isuslog.log: [1 3 4 5 7] INFO 2025-06-26 11:04:36,790 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/parosci.log (11613830 bytes) INFO 2025-06-26 11:04:37,728 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.342.00/parosci.log: [52048 52049 52050] INFO 2025-06-26 11:04:37,757 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/tailCone.log (5428555 bytes) INFO 2025-06-26 11:04:38,427 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.342.00/biolume.log (6156588 bytes) INFO 2025-06-26 11:04:39,011 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:04:39,350 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.32 seconds WARNING 2025-06-26 11:04:39,350 process.py download_process():196 [1] No lopc.bin file for 2005.342.00 INFO 2025-06-26 11:04:39,350 process.py calibrate():227 [1] Calibration steps for 2005.342.00 INFO 2025-06-26 11:04:39,541 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:04:39,543 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:04:41,143 calibrate.py _nudge_pos():1806 [1] 184: 0.190 0.0001191 -0.0000447 1937 6.48 2.724 -1.280 2005-12-08T16:17:03.784328448 INFO 2025-06-26 11:04:42,126 calibrate.py _nudge_pos():1806 [1] 288: 0.180 -0.0036861 0.0020252 10712 35.73 -15.286 10.503 2005-12-08T16:54:30.790398080 INFO 2025-06-26 11:04:42,685 calibrate.py _nudge_pos():1806 [1] 347: 0.200 -0.0035964 0.0012666 11500 38.33 -13.908 6.123 2005-12-08T17:33:48.788864128 INFO 2025-06-26 11:04:43,333 calibrate.py _nudge_pos():1806 [1] 415: 0.190 -0.0040789 0.0003534 11634 38.78 -15.598 1.689 2005-12-08T18:13:42.784864128 INFO 2025-06-26 11:04:43,952 calibrate.py _nudge_pos():1806 [1] 480: 0.190 -0.0062372 -0.0000277 11410 38.03 -24.329 -0.135 2005-12-08T18:52:48.784152320 INFO 2025-06-26 11:04:44,660 calibrate.py _nudge_pos():1806 [1] 553: 0.200 -0.0054731 0.0008061 11669 38.89 -20.882 3.840 2005-12-08T19:32:54.789329536 INFO 2025-06-26 11:04:45,216 calibrate.py _nudge_pos():1806 [1] 610: 0.190 -0.0057092 0.0011109 11450 38.16 -22.207 5.394 2005-12-08T20:12:00.788617600 INFO 2025-06-26 11:04:45,746 calibrate.py _nudge_pos():1806 [1] 664: 0.200 -0.0020644 -0.0000257 4348 14.51 -21.118 -0.328 2005-12-08T20:27:24.785319552 INFO 2025-06-26 11:04:46,325 calibrate.py _nudge_pos():1806 [1] 724: 0.010 -0.0003526 -0.0012759 12031 40.12 -1.305 -5.893 2005-12-08T21:08:30.986373248 INFO 2025-06-26 11:04:46,906 calibrate.py _nudge_pos():1806 [1] 783: 0.200 0.0005396 -0.0008493 11434 38.13 2.102 -4.128 2005-12-08T21:47:36.785674752 INFO 2025-06-26 11:04:47,518 calibrate.py _nudge_pos():1806 [1] 845: 0.020 0.0004804 -0.0004307 10669 35.58 2.006 -2.243 2005-12-08T22:24:12.985224960 INFO 2025-06-26 11:04:47,714 calibrate.py _nudge_pos():1862 [1] 844: - - - 1 0.00 - - INFO 2025-06-26 11:04:47,714 calibrate.py _nudge_pos():1868 [1] Points in final series = 112701 WARNING 2025-06-26 11:04:51,633 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:05:03,486 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:04,355 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:05,031 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:05,034 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.342.00/ctd1.nc INFO 2025-06-26 11:05:05,036 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:05:05,036 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:05:05,036 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:05:09,991 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:10,690 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:05:10,693 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.342.00/ctd2.nc INFO 2025-06-26 11:05:10,694 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:05:10,694 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:05:10,694 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:05:11,453 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:05:12,481 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [369240 475500 589680] INFO 2025-06-26 11:05:12,685 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:05:12,690 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:05:12,690 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.342.00 ERROR 2025-06-26 11:05:12,691 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.342.00 INFO 2025-06-26 11:05:12,779 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_cal.nc INFO 2025-06-26 11:05:15,640 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:05:15,644 process.py align():251 [1] Alignment steps for 2005.342.00 INFO 2025-06-26 11:05:15,673 align.py process_cal():139 [1] Processing dorado_2005.342.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.342.00 INFO 2025-06-26 11:05:15,706 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:15,710 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:15,790 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:15,795 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:15,873 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:15,878 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:15,925 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:05:15,925 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:05:15,957 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:05:15,961 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:16,039 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:16,043 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,112 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:16,116 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,184 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:05:16,189 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,258 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,262 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,330 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,335 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,402 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,407 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,475 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,480 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,547 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,552 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,620 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,624 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,692 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,697 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,767 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,772 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,841 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,846 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,919 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:16,988 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:16,992 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,063 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,068 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,136 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,141 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,210 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,215 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,284 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,289 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,358 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,363 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,432 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.342.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:05:17,437 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:05:17,525 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:17,585 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:17,645 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:05:17,714 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:05:17,779 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:05:17,835 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_align.nc INFO 2025-06-26 11:05:17,927 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:05:17,929 process.py resample():273 [1] Resampling steps for 2005.342.00 INFO 2025-06-26 11:05:17,930 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:05:17,959 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_align.nc mission netCDF file INFO 2025-06-26 11:05:17,965 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_align.nc mission netCDF file INFO 2025-06-26 11:05:17,967 resample.py get_mission_start_end():1145 [1] navigation: 2005-12-08T16:07:53.402032384 to 2005-12-08T22:24:32.183909632 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 11:05:17,969 resample.py get_mission_start_end():1145 [1] hs2 : 2005-12-08T16:07:36.143214720 to 2005-12-08T22:24:32.203908480 (0 days 00:00:00.039997056 before mission_end) INFO 2025-06-26 11:05:17,971 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-12-08T16:07:58.731667328 to 2005-12-08T22:24:32.183909632 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 11:05:17,973 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-12-08T16:07:59.011648000 to 2005-12-08T22:24:32.233906304 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 11:05:17,975 resample.py get_mission_start_end():1145 [1] isus : 2005-12-08T16:08:35.249165568 to 2005-12-08T22:24:31.493956992 (0 days 00:00:00.749948544 before mission_end) INFO 2025-06-26 11:05:17,977 resample.py get_mission_start_end():1145 [1] biolume : 2005-12-08T16:07:30.243584640 to 2005-12-08T22:24:30.923961856 (0 days 00:00:01.319943680 before mission_end) INFO 2025-06-26 11:05:17,979 resample.py get_mission_start_end():1145 [1] tailcone : 2005-12-08T16:07:31.673520768 to 2005-12-08T22:24:32.243905536 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:05:17,980 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_align.nc mission netCDF file INFO 2025-06-26 11:05:17,980 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,252 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,298 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,343 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,387 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,427 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,467 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,523 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,563 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,599 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,634 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,669 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,705 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,742 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,777 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,810 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,843 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,879 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,916 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,951 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:18,985 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,021 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,056 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,073 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,088 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,102 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,118 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,159 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:05:19,385 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_1S.nc INFO 2025-06-26 11:05:20,920 create_products.py gulper_odv():401 [1] No gulper times found for 2005.342.00 INFO 2025-06-26 11:05:20,920 process.py archive():337 [1] Archiving steps for 2005.342.00 INFO 2025-06-26 11:05:20,920 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00, BASE_PATH = /data/auv_data INFO 2025-06-26 11:05:20,921 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:05:20,922 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.342.00_1S.nc INFO 2025-06-26 11:05:20,944 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:05:20,945 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.342.00_cal.nc INFO 2025-06-26 11:05:21,047 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:05:21,049 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.342.00_align.nc INFO 2025-06-26 11:05:21,146 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:05:21,175 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,202 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,208 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,228 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,307 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,314 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,352 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,376 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,439 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005342/2005.342.00 done. INFO 2025-06-26 11:05:21,439 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:05:21,439 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.342.00/dorado_2005.342.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf