INFO 2025-06-26 11:03:37,611 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:03:37,611 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 11/28/05 - ctdToUse = ctd1 INFO 2025-06-26 11:03:37,611 process.py process_mission():449 [1] Processing AUVCTD mission 2005.332.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:03:37,611 process.py download_process():165 [1] Download and processing steps for 2005.332.02 INFO 2025-06-26 11:03:37,611 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005332/2005.332.02 INFO 2025-06-26 11:03:37,611 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005332/2005.332.02 to /data/auv_data/dorado/missionlogs/2005.332.02 INFO 2025-06-26 11:03:38,628 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.332.02 INFO 2025-06-26 11:03:38,628 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/ctdDriver.log (492579 bytes) INFO 2025-06-26 11:03:38,672 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/ctdDriver2.log (492485 bytes) INFO 2025-06-26 11:03:38,714 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/gps.log (8564 bytes) INFO 2025-06-26 11:03:38,723 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/hydroscatlog.log (341954 bytes) INFO 2025-06-26 11:03:38,771 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/navigation.log (1660858 bytes) INFO 2025-06-26 11:03:38,901 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/isuslog.log (27381 bytes) INFO 2025-06-26 11:03:38,908 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/parosci.log (731990 bytes) INFO 2025-06-26 11:03:38,975 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/tailCone.log (343040 bytes) WARNING 2025-06-26 11:03:39,007 logs2netcdfs.py _read_data():216 [1] unpack requires a buffer of 4 bytes, b = b'\\' at record 7135, for rudderAngle in file /data/auv_data/dorado/missionlogs/2005.332.02/tailCone.log INFO 2025-06-26 11:03:39,007 logs2netcdfs.py _read_data():224 [1] bytes read = 343043 file size = 343040 INFO 2025-06-26 11:03:39,008 logs2netcdfs.py _read_data():229 [1] Tried to read 4 bytes, but only 3 bytes remaining INFO 2025-06-26 11:03:39,008 logs2netcdfs.py _read_data():235 [1] Successfully unpacked 7135 records WARNING 2025-06-26 11:03:39,016 logs2netcdfs.py _create_variable():536 [1] propPwm: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (7136,) and arg 1 with shape (7135,). INFO 2025-06-26 11:03:39,016 logs2netcdfs.py _create_variable():537 [1] len(data) (7135) does not match shape of propPwm.shape[0] (7136) WARNING 2025-06-26 11:03:39,016 logs2netcdfs.py _create_variable():544 [1] propPwm data is short by one, appending the last value: 0 WARNING 2025-06-26 11:03:39,017 logs2netcdfs.py _create_variable():536 [1] propTemp: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (7136,) and arg 1 with shape (7135,). INFO 2025-06-26 11:03:39,017 logs2netcdfs.py _create_variable():537 [1] len(data) (7135) does not match shape of propTemp.shape[0] (7136) WARNING 2025-06-26 11:03:39,017 logs2netcdfs.py _create_variable():544 [1] propTemp data is short by one, appending the last value: 0 INFO 2025-06-26 11:03:39,028 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.332.02/biolume.log (390732 bytes) INFO 2025-06-26 11:03:39,072 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:03:39,095 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.47 seconds WARNING 2025-06-26 11:03:39,095 process.py download_process():196 [1] No lopc.bin file for 2005.332.02 INFO 2025-06-26 11:03:39,095 process.py calibrate():227 [1] Calibration steps for 2005.332.02 INFO 2025-06-26 11:03:39,160 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:03:39,162 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:03:39,649 calibrate.py _nudge_pos():1806 [1] 68: 0.150 -0.0000297 -0.0000026 55 0.18 -24.470 -2.701 2005-11-28T18:41:09.960988800 INFO 2025-06-26 11:03:39,762 calibrate.py _nudge_pos():1806 [1] 80: 0.170 -0.0011040 0.0012743 6559 21.86 -7.481 10.800 2005-11-28T19:03:12.960357248 INFO 2025-06-26 11:03:40,015 calibrate.py _nudge_pos():1862 [1] 86: - - - 1 0.00 - - INFO 2025-06-26 11:03:40,015 calibrate.py _nudge_pos():1868 [1] Points in final series = 7029 WARNING 2025-06-26 11:03:40,033 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:03:40,104 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:40,180 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:40,225 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:40,227 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.332.02/ctd1.nc INFO 2025-06-26 11:03:40,228 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:03:40,228 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:03:40,228 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:03:40,294 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:40,342 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:40,344 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.332.02/ctd2.nc INFO 2025-06-26 11:03:40,345 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:03:40,345 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:03:40,345 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:03:40,353 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:03:40,416 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 47280] INFO 2025-06-26 11:03:40,433 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:03:40,438 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:03:40,438 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.332.02 ERROR 2025-06-26 11:03:40,438 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.332.02 INFO 2025-06-26 11:03:40,447 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_cal.nc INFO 2025-06-26 11:03:40,492 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:03:40,496 process.py align():251 [1] Alignment steps for 2005.332.02 INFO 2025-06-26 11:03:40,518 align.py process_cal():139 [1] Processing dorado_2005.332.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.332.02 INFO 2025-06-26 11:03:40,525 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:40,526 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:40,540 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:40,542 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:40,555 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:40,556 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:40,564 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:03:40,564 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:03:40,570 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:40,571 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:40,584 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:40,586 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,598 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:40,600 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,612 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:40,614 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,626 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,627 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,639 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,641 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,653 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,655 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,667 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,669 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,681 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,683 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,695 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,697 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,709 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,711 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,723 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,725 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,737 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,739 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,751 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,752 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,765 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,767 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,779 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,781 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,794 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,796 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,809 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,811 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,823 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,825 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,838 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,840 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,852 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.332.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:40,854 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:40,870 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:40,885 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:40,899 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:40,915 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:03:40,931 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:40,944 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_align.nc INFO 2025-06-26 11:03:40,988 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:03:40,990 process.py resample():273 [1] Resampling steps for 2005.332.02 INFO 2025-06-26 11:03:40,991 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:03:41,013 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_align.nc mission netCDF file INFO 2025-06-26 11:03:41,017 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_align.nc mission netCDF file INFO 2025-06-26 11:03:41,019 resample.py get_mission_start_end():1145 [1] navigation: 2005-11-28T18:40:13.364865792 to 2005-11-28T19:03:39.158562432 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 11:03:41,020 resample.py get_mission_start_end():1145 [1] hs2 : 2005-11-28T18:39:57.805931776 to 2005-11-28T19:03:39.078567936 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 11:03:41,021 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-11-28T18:40:21.934278784 to 2005-11-28T19:03:39.148563200 (0 days 00:00:00.059995776 before mission_end) INFO 2025-06-26 11:03:41,022 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-11-28T18:40:22.194261120 to 2005-11-28T19:03:39.148563200 (0 days 00:00:00.059995776 before mission_end) INFO 2025-06-26 11:03:41,024 resample.py get_mission_start_end():1145 [1] isus : 2005-11-28T18:41:20.810245504 to 2005-11-28T19:03:38.308620672 (0 days 00:00:00.899938304 before mission_end) INFO 2025-06-26 11:03:41,025 resample.py get_mission_start_end():1145 [1] biolume : 2005-11-28T18:39:53.166215424 to 2005-11-28T19:03:37.988608384 (0 days 00:00:01.219950592 before mission_end) INFO 2025-06-26 11:03:41,026 resample.py get_mission_start_end():1145 [1] tailcone : 2005-11-28T18:39:52.116321536 to 2005-11-28T19:03:39.208558976 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:03:41,027 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_align.nc mission netCDF file INFO 2025-06-26 11:03:41,027 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,069 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,079 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,088 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,098 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,108 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,118 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,128 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,137 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,146 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,155 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,163 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,171 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,180 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,188 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,196 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,204 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,214 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,223 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,232 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,241 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,250 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,259 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,268 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,276 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,284 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,293 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,304 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:41,405 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_1S.nc INFO 2025-06-26 11:03:42,220 create_products.py gulper_odv():401 [1] No gulper times found for 2005.332.02 INFO 2025-06-26 11:03:42,220 process.py archive():337 [1] Archiving steps for 2005.332.02 INFO 2025-06-26 11:03:42,220 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02, BASE_PATH = /data/auv_data INFO 2025-06-26 11:03:42,220 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:03:42,222 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.332.02_1S.nc INFO 2025-06-26 11:03:42,230 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:42,231 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.332.02_cal.nc INFO 2025-06-26 11:03:42,245 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:42,246 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.332.02_align.nc INFO 2025-06-26 11:03:42,259 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:42,267 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,274 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,281 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,289 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,300 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,304 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,311 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,317 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,326 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005332/2005.332.02 done. INFO 2025-06-26 11:03:42,326 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:03:42,326 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.332.02/dorado_2005.332.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf