INFO 2025-06-26 11:02:56,466 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:02:56,466 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 11/22/05 - ctdToUse = ctd1 INFO 2025-06-26 11:02:56,466 process.py process_mission():449 [1] Processing AUVCTD mission 2005.324.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:02:56,466 process.py download_process():165 [1] Download and processing steps for 2005.324.03 INFO 2025-06-26 11:02:56,466 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005324/2005.324.03 INFO 2025-06-26 11:02:56,466 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005324/2005.324.03 to /data/auv_data/dorado/missionlogs/2005.324.03 INFO 2025-06-26 11:02:59,395 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.324.03 INFO 2025-06-26 11:02:59,395 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/ctdDriver.log (6687515 bytes) INFO 2025-06-26 11:02:59,880 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/ctdDriver2.log (6687685 bytes) INFO 2025-06-26 11:03:00,373 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/gps.log (47156 bytes) INFO 2025-06-26 11:03:00,387 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/hydroscatlog.log (4564034 bytes) INFO 2025-06-26 11:03:00,908 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.324.03/hydroscatlog.log: [54873] INFO 2025-06-26 11:03:00,918 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/navigation.log (22424846 bytes) INFO 2025-06-26 11:03:02,489 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/isuslog.log (382773 bytes) INFO 2025-06-26 11:03:02,530 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/parosci.log (9785126 bytes) INFO 2025-06-26 11:03:03,352 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/tailCone.log (4566043 bytes) INFO 2025-06-26 11:03:03,933 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.324.03/biolume.log (5178476 bytes) INFO 2025-06-26 11:03:04,426 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:03:04,689 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.29 seconds WARNING 2025-06-26 11:03:04,690 process.py download_process():196 [1] No lopc.bin file for 2005.324.03 INFO 2025-06-26 11:03:04,690 process.py calibrate():227 [1] Calibration steps for 2005.324.03 INFO 2025-06-26 11:03:04,927 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:03:04,929 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:03:05,925 calibrate.py _nudge_pos():1806 [1] 121: 0.010 0.0002153 0.0060019 12121 40.41 0.791 27.519 2005-11-20T18:43:44.615748608 INFO 2025-06-26 11:03:05,954 calibrate.py _nudge_pos():1806 [1] 124: 0.200 -0.0000057 0.0000112 14 0.04 -19.477 47.838 2005-11-20T18:43:49.415419776 INFO 2025-06-26 11:03:06,696 calibrate.py _nudge_pos():1806 [1] 202: 0.010 0.0003617 0.0041879 12068 40.23 1.335 19.289 2005-11-20T19:25:20.614761088 INFO 2025-06-26 11:03:07,332 calibrate.py _nudge_pos():1806 [1] 269: 0.010 0.0007720 0.0036003 12030 40.10 2.859 16.638 2005-11-20T20:06:32.615417472 INFO 2025-06-26 11:03:08,060 calibrate.py _nudge_pos():1806 [1] 345: 0.010 0.0015736 0.0026096 12075 40.25 5.805 12.015 2005-11-20T20:48:02.614840704 INFO 2025-06-26 11:03:08,660 calibrate.py _nudge_pos():1806 [1] 406: 0.010 0.0015595 0.0010073 12057 40.20 5.760 4.644 2005-11-20T21:29:14.615497088 INFO 2025-06-26 11:03:09,389 calibrate.py _nudge_pos():1806 [1] 481: 0.020 0.0020253 0.0006485 12170 40.56 7.412 2.962 2005-11-20T22:11:02.613687552 INFO 2025-06-26 11:03:10,089 calibrate.py _nudge_pos():1806 [1] 553: 0.010 0.0010709 -0.0001660 12185 40.61 3.914 -0.758 2005-11-20T22:52:50.611877888 INFO 2025-06-26 11:03:10,752 calibrate.py _nudge_pos():1806 [1] 621: 0.010 0.0005215 0.0002560 7225 24.08 3.214 1.970 2005-11-20T23:18:02.618298240 INFO 2025-06-26 11:03:10,963 calibrate.py _nudge_pos():1862 [1] 622: - - - 3 0.01 - - INFO 2025-06-26 11:03:10,963 calibrate.py _nudge_pos():1868 [1] Points in final series = 95003 WARNING 2025-06-26 11:03:11,120 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:03:21,116 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:03:21,842 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:22,416 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:22,418 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.324.03/ctd1.nc INFO 2025-06-26 11:03:22,419 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:03:22,420 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:03:22,420 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:03:23,111 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:23,682 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:03:23,684 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.324.03/ctd2.nc INFO 2025-06-26 11:03:23,685 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:03:23,685 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:03:23,685 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:03:23,715 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:03:24,599 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 82920 644760 645180 646140 646560 874440 986520] INFO 2025-06-26 11:03:24,773 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:03:24,780 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:03:24,781 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.324.03 ERROR 2025-06-26 11:03:24,781 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.324.03 INFO 2025-06-26 11:03:24,867 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_cal.nc INFO 2025-06-26 11:03:24,957 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:03:24,962 process.py align():251 [1] Alignment steps for 2005.324.03 INFO 2025-06-26 11:03:24,990 align.py process_cal():139 [1] Processing dorado_2005.324.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.324.03 INFO 2025-06-26 11:03:25,020 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:25,024 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:25,098 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:25,103 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:25,170 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:25,175 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:25,219 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:03:25,219 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:03:25,249 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:03:25,253 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:25,322 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:25,327 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,388 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:25,392 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,453 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:03:25,457 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,517 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,521 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,581 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,585 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,647 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,651 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,713 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,717 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,777 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,781 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,843 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,848 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,908 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,913 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:25,974 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:25,979 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,040 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,044 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,105 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,109 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,169 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,173 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,234 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,238 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,300 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,305 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,367 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,371 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,431 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,436 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,497 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,502 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,562 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.324.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:03:26,566 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:03:26,644 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:26,698 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:26,753 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:03:26,810 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:03:26,871 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:03:26,918 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_align.nc INFO 2025-06-26 11:03:26,995 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:03:26,998 process.py resample():273 [1] Resampling steps for 2005.324.03 INFO 2025-06-26 11:03:26,998 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:03:27,024 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_align.nc mission netCDF file INFO 2025-06-26 11:03:27,030 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_align.nc mission netCDF file INFO 2025-06-26 11:03:27,031 resample.py get_mission_start_end():1145 [1] navigation: 2005-11-20T18:01:40.308675584 to 2005-11-20T23:18:24.216818816 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 11:03:27,033 resample.py get_mission_start_end():1145 [1] hs2 : 2005-11-20T18:01:23.279842176 to 2005-11-20T23:18:24.356809088 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:03:27,034 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-11-20T18:01:46.988218112 to 2005-11-20T23:18:24.266815232 (0 days 00:00:00.089993856 before mission_end) INFO 2025-06-26 11:03:27,036 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-11-20T18:01:46.998217344 to 2005-11-20T23:18:24.276814720 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 11:03:27,037 resample.py get_mission_start_end():1145 [1] isus : 2005-11-20T18:02:45.904182016 to 2005-11-20T23:18:23.896840576 (0 days 00:00:00.459968512 before mission_end) INFO 2025-06-26 11:03:27,039 resample.py get_mission_start_end():1145 [1] biolume : 2005-11-20T18:01:18.070164736 to 2005-11-20T23:18:23.036865280 (0 days 00:00:01.319943808 before mission_end) INFO 2025-06-26 11:03:27,040 resample.py get_mission_start_end():1145 [1] tailcone : 2005-11-20T18:01:19.270116864 to 2005-11-20T23:18:24.246816640 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 11:03:27,041 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_align.nc mission netCDF file INFO 2025-06-26 11:03:27,041 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,251 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,289 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,325 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,363 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,395 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,428 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,459 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,490 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,519 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,547 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,575 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,604 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,633 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,661 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,689 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,718 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,748 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,778 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,808 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,838 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,869 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,898 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,913 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,927 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,939 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,955 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:27,990 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:03:28,195 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_1S.nc INFO 2025-06-26 11:03:29,385 create_products.py gulper_odv():401 [1] No gulper times found for 2005.324.03 INFO 2025-06-26 11:03:29,385 process.py archive():337 [1] Archiving steps for 2005.324.03 INFO 2025-06-26 11:03:29,386 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03, BASE_PATH = /data/auv_data INFO 2025-06-26 11:03:29,386 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:03:29,387 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.324.03_1S.nc INFO 2025-06-26 11:03:29,406 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:29,407 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.324.03_cal.nc INFO 2025-06-26 11:03:29,492 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:29,493 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.324.03_align.nc INFO 2025-06-26 11:03:29,590 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:03:29,624 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,650 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,655 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,671 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,732 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,739 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,769 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,788 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,846 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005324/2005.324.03 done. INFO 2025-06-26 11:03:29,847 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:03:29,847 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.324.03/dorado_2005.324.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf