INFO 2025-06-26 11:01:49,106 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:01:49,106 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 10/28/05 - ctdToUse = ctd1 INFO 2025-06-26 11:01:49,106 process.py process_mission():449 [1] Processing AUVCTD mission 2005.306.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:01:49,106 process.py download_process():165 [1] Download and processing steps for 2005.306.00 INFO 2025-06-26 11:01:49,106 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005306/2005.306.00 INFO 2025-06-26 11:01:49,106 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005306/2005.306.00 to /data/auv_data/dorado/missionlogs/2005.306.00 INFO 2025-06-26 11:01:51,929 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.306.00 INFO 2025-06-26 11:01:51,930 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/ctdDriver.log (6937963 bytes) INFO 2025-06-26 11:01:52,446 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/ctdDriver2.log (6937957 bytes) INFO 2025-06-26 11:01:52,966 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/gps.log (49460 bytes) INFO 2025-06-26 11:01:52,979 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/hydroscatlog.log (4734074 bytes) INFO 2025-06-26 11:01:53,540 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/navigation.log (23264298 bytes) INFO 2025-06-26 11:01:55,182 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/isuslog.log (398805 bytes) INFO 2025-06-26 11:01:55,224 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/parosci.log (10149254 bytes) INFO 2025-06-26 11:01:56,068 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/tailCone.log (4736635 bytes) INFO 2025-06-26 11:01:56,644 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.306.00/biolume.log (5371596 bytes) INFO 2025-06-26 11:01:57,151 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:01:57,421 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.49 seconds WARNING 2025-06-26 11:01:57,421 process.py download_process():196 [1] No lopc.bin file for 2005.306.00 INFO 2025-06-26 11:01:57,421 process.py calibrate():227 [1] Calibration steps for 2005.306.00 INFO 2025-06-26 11:01:57,594 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:01:57,595 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:01:59,085 calibrate.py _nudge_pos():1806 [1] 175: 0.180 0.0016021 0.0012018 4160 13.86 17.164 16.064 2005-11-02T17:28:18.558241664 INFO 2025-06-26 11:01:59,105 calibrate.py _nudge_pos():1806 [1] 177: 0.170 -0.0000274 -0.0000119 55 0.18 -22.598 -12.203 2005-11-02T17:28:30.557419520 INFO 2025-06-26 11:01:59,929 calibrate.py _nudge_pos():1806 [1] 264: 0.180 0.0002723 0.0014330 11780 39.26 1.030 6.763 2005-11-02T18:09:12.560130816 INFO 2025-06-26 11:02:00,538 calibrate.py _nudge_pos():1806 [1] 324: 0.170 0.0012117 0.0024267 11975 39.91 4.508 11.266 2005-11-02T18:50:06.562020352 INFO 2025-06-26 11:02:00,968 calibrate.py _nudge_pos():1806 [1] 370: 0.170 0.0000665 0.0024745 12045 40.15 0.246 11.421 2005-11-02T19:31:00.563909504 INFO 2025-06-26 11:02:01,573 calibrate.py _nudge_pos():1806 [1] 433: 0.180 0.0014030 0.0028249 11960 39.86 5.226 13.131 2005-11-02T20:11:54.555799680 INFO 2025-06-26 11:02:02,092 calibrate.py _nudge_pos():1806 [1] 487: 0.190 0.0026984 0.0022344 12125 40.41 9.913 10.245 2005-11-02T20:53:12.556045056 INFO 2025-06-26 11:02:02,650 calibrate.py _nudge_pos():1806 [1] 542: 0.190 0.0024063 0.0024216 12150 40.50 8.820 11.081 2005-11-02T21:34:36.555879296 INFO 2025-06-26 11:02:03,175 calibrate.py _nudge_pos():1806 [1] 596: 0.190 0.0025426 0.0022120 12035 40.11 9.408 10.218 2005-11-02T22:15:36.557357824 INFO 2025-06-26 11:02:03,725 calibrate.py _nudge_pos():1806 [1] 653: 0.190 0.0016243 0.0013524 7070 23.56 10.232 10.635 2005-11-02T22:40:06.556655872 INFO 2025-06-26 11:02:03,945 calibrate.py _nudge_pos():1862 [1] 654: - - - 1 0.00 - - INFO 2025-06-26 11:02:03,945 calibrate.py _nudge_pos():1868 [1] Points in final series = 98552 WARNING 2025-06-26 11:02:04,108 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:02:04,858 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:02:05,611 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:02:06,206 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:02:06,208 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.306.00/ctd1.nc INFO 2025-06-26 11:02:06,209 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:02:06,210 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:02:06,210 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:02:06,913 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:02:07,501 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:02:07,503 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.306.00/ctd2.nc INFO 2025-06-26 11:02:07,504 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:02:07,505 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:02:07,505 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:02:07,535 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:02:08,449 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [209040 543720] INFO 2025-06-26 11:02:08,638 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:02:08,643 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:02:08,644 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.306.00 ERROR 2025-06-26 11:02:08,644 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.306.00 INFO 2025-06-26 11:02:08,735 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_cal.nc INFO 2025-06-26 11:02:08,827 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:02:08,832 process.py align():251 [1] Alignment steps for 2005.306.00 INFO 2025-06-26 11:02:08,862 align.py process_cal():139 [1] Processing dorado_2005.306.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.306.00 INFO 2025-06-26 11:02:08,892 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:02:08,895 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:02:08,968 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:02:08,973 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:02:09,043 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:02:09,048 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:02:09,090 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:02:09,090 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:02:09,118 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:02:09,123 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:02:09,193 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:02:09,197 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,259 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:02:09,263 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,324 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:02:09,327 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,388 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,392 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,454 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,458 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,518 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,522 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,583 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,587 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,649 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,653 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,715 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,720 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,782 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,786 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,848 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,852 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,913 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,918 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:09,980 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:09,984 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,047 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,051 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,113 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,117 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,179 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,183 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,245 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,249 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,310 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,314 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,375 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,379 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,440 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.306.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:02:10,444 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:02:10,523 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:02:10,577 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:02:10,632 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:02:10,688 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:02:10,749 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:02:10,799 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_align.nc INFO 2025-06-26 11:02:10,881 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:02:10,883 process.py resample():273 [1] Resampling steps for 2005.306.00 INFO 2025-06-26 11:02:10,884 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:02:10,911 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_align.nc mission netCDF file INFO 2025-06-26 11:02:10,917 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_align.nc mission netCDF file INFO 2025-06-26 11:02:10,919 resample.py get_mission_start_end():1145 [1] navigation: 2005-11-02T17:11:54.365663232 to 2005-11-02T22:40:27.965189248 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 11:02:10,922 resample.py get_mission_start_end():1145 [1] hs2 : 2005-11-02T17:11:36.976854528 to 2005-11-02T22:40:28.005186560 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:02:10,924 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-11-02T17:12:00.415248896 to 2005-11-02T22:40:27.935191424 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 11:02:10,927 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-11-02T17:12:00.465245440 to 2005-11-02T22:40:27.985187968 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 11:02:10,929 resample.py get_mission_start_end():1145 [1] isus : 2005-11-02T17:12:59.411207424 to 2005-11-02T22:40:27.425226240 (0 days 00:00:00.579960320 before mission_end) INFO 2025-06-26 11:02:10,931 resample.py get_mission_start_end():1145 [1] biolume : 2005-11-02T17:11:32.117153152 to 2005-11-02T22:40:27.015220224 (0 days 00:00:00.989966336 before mission_end) INFO 2025-06-26 11:02:10,933 resample.py get_mission_start_end():1145 [1] tailcone : 2005-11-02T17:11:32.597154560 to 2005-11-02T22:40:27.955189888 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 11:02:10,934 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_align.nc mission netCDF file INFO 2025-06-26 11:02:10,935 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,165 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,203 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,239 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,276 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,309 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,341 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,373 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,405 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,434 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,464 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,494 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,524 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,552 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,581 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,611 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,640 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,672 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,703 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,734 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,764 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,795 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,826 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,841 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,855 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,868 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,883 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:11,920 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:02:12,132 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_1S.nc INFO 2025-06-26 11:02:13,283 create_products.py gulper_odv():401 [1] No gulper times found for 2005.306.00 INFO 2025-06-26 11:02:13,283 process.py archive():337 [1] Archiving steps for 2005.306.00 INFO 2025-06-26 11:02:13,283 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00, BASE_PATH = /data/auv_data INFO 2025-06-26 11:02:13,283 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:02:13,285 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.306.00_1S.nc INFO 2025-06-26 11:02:13,304 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:02:13,305 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.306.00_cal.nc INFO 2025-06-26 11:02:13,599 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:02:13,600 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.306.00_align.nc INFO 2025-06-26 11:02:13,687 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:02:13,711 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,735 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,739 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,756 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,817 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,823 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,854 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,874 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,929 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005306/2005.306.00 done. INFO 2025-06-26 11:02:13,930 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:02:13,930 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.306.00/dorado_2005.306.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf