INFO 2025-06-26 11:01:13,771 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:01:13,771 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 10/28/05 - ctdToUse = ctd1 INFO 2025-06-26 11:01:13,772 process.py process_mission():449 [1] Processing BIOLUME mission 2005.301.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:01:13,772 process.py download_process():165 [1] Download and processing steps for 2005.301.00 INFO 2025-06-26 11:01:13,772 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005301/2005.301.00 INFO 2025-06-26 11:01:13,772 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005301/2005.301.00 to /data/auv_data/dorado/missionlogs/2005.301.00 INFO 2025-06-26 11:01:17,785 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.301.00 INFO 2025-06-26 11:01:17,785 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/ctdDriver.log (9548307 bytes) INFO 2025-06-26 11:01:18,516 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/ctdDriver2.log (9548213 bytes) INFO 2025-06-26 11:01:19,233 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/gps.log (78260 bytes) INFO 2025-06-26 11:01:19,250 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/hydroscatlog.log (6512954 bytes) INFO 2025-06-26 11:01:20,087 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/navigation.log (32013526 bytes) INFO 2025-06-26 11:01:22,380 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/isuslog.log (547797 bytes) INFO 2025-06-26 11:01:22,437 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/parosci.log (13939574 bytes) INFO 2025-06-26 11:01:23,604 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/tailCone.log (6516043 bytes) INFO 2025-06-26 11:01:24,400 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.301.00/biolume.log (7388748 bytes) INFO 2025-06-26 11:01:25,126 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:01:25,502 logs2netcdfs.py download_process_logs():807 [1] Time to process: 7.72 seconds WARNING 2025-06-26 11:01:25,502 process.py download_process():196 [1] No lopc.bin file for 2005.301.00 INFO 2025-06-26 11:01:25,503 process.py calibrate():227 [1] Calibration steps for 2005.301.00 INFO 2025-06-26 11:01:25,721 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:01:25,723 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:01:27,301 calibrate.py _nudge_pos():1806 [1] 181: 0.130 -0.0002480 -0.0000236 1210 4.03 -9.114 -1.086 2005-10-28T01:28:06.752505600 INFO 2025-06-26 11:01:28,125 calibrate.py _nudge_pos():1806 [1] 267: 0.120 -0.0038814 0.0020137 10105 33.68 -17.076 11.079 2005-10-28T02:03:12.758234240 INFO 2025-06-26 11:01:28,746 calibrate.py _nudge_pos():1806 [1] 331: 0.130 -0.0043044 0.0018327 10725 35.75 -17.849 9.500 2005-10-28T02:40:00.756976128 INFO 2025-06-26 11:01:29,289 calibrate.py _nudge_pos():1806 [1] 388: 0.120 -0.0053417 0.0016979 10460 34.86 -22.719 9.024 2005-10-28T03:15:48.759827840 INFO 2025-06-26 11:01:29,871 calibrate.py _nudge_pos():1806 [1] 446: 0.120 -0.0061826 0.0013432 10995 36.65 -25.026 6.792 2005-10-28T03:53:24.755281408 INFO 2025-06-26 11:01:30,611 calibrate.py _nudge_pos():1806 [1] 522: 0.140 -0.0046591 0.0010804 10725 35.75 -19.341 5.600 2005-10-28T04:30:24.753201280 INFO 2025-06-26 11:01:31,202 calibrate.py _nudge_pos():1806 [1] 582: 0.130 -0.0034763 0.0017340 10745 35.81 -14.409 8.972 2005-10-28T05:07:12.751942912 INFO 2025-06-26 11:01:31,855 calibrate.py _nudge_pos():1806 [1] 649: 0.130 -0.0012874 0.0007093 4500 15.00 -12.746 8.764 2005-10-28T05:23:18.755767168 INFO 2025-06-26 11:01:32,441 calibrate.py _nudge_pos():1806 [1] 709: 0.130 0.0023418 0.0008095 10775 35.91 9.684 4.177 2005-10-28T06:00:12.754097920 INFO 2025-06-26 11:01:33,033 calibrate.py _nudge_pos():1806 [1] 768: 0.140 0.0004302 0.0002101 10780 35.93 1.779 1.083 2005-10-28T06:37:06.752428544 INFO 2025-06-26 11:01:33,581 calibrate.py _nudge_pos():1806 [1] 824: 0.150 -0.0003117 0.0000496 11515 38.38 -1.207 0.240 2005-10-28T07:16:24.750894848 INFO 2025-06-26 11:01:34,107 calibrate.py _nudge_pos():1806 [1] 876: 0.150 -0.0000634 0.0000974 10575 35.25 -0.267 0.512 2005-10-28T07:52:30.752513408 INFO 2025-06-26 11:01:34,630 calibrate.py _nudge_pos():1806 [1] 928: 0.150 -0.0000700 0.0000833 11205 37.35 -0.279 0.413 2005-10-28T08:30:42.755500288 INFO 2025-06-26 11:01:35,212 calibrate.py _nudge_pos():1806 [1] 985: 0.140 -0.0000308 0.0000140 2690 8.96 -0.511 0.290 2005-10-28T08:40:36.754808704 INFO 2025-06-26 11:01:35,879 calibrate.py _nudge_pos():1806 [1] 1052: 0.160 -0.0000999 0.0000029 3450 11.50 -1.293 0.047 2005-10-28T08:53:12.753019392 INFO 2025-06-26 11:01:36,111 calibrate.py _nudge_pos():1862 [1] 1053: - - - 1 0.00 - - INFO 2025-06-26 11:01:36,111 calibrate.py _nudge_pos():1868 [1] Points in final series = 135641 WARNING 2025-06-26 11:01:36,335 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:01:37,338 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:38,370 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:39,189 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:39,192 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.301.00/ctd1.nc INFO 2025-06-26 11:01:39,193 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:01:39,193 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:01:39,193 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:01:40,172 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:40,997 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:41,000 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.301.00/ctd2.nc INFO 2025-06-26 11:01:41,001 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 11:01:41,001 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:01:41,001 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:01:41,042 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:01:42,347 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 5820 145980 270840 496680 1138680 1628520 1628521 1628522 1628523] INFO 2025-06-26 11:01:42,595 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:01:42,601 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:01:42,601 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.301.00 ERROR 2025-06-26 11:01:42,602 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.301.00 INFO 2025-06-26 11:01:42,707 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_cal.nc INFO 2025-06-26 11:01:42,819 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:01:42,824 process.py align():251 [1] Alignment steps for 2005.301.00 INFO 2025-06-26 11:01:42,855 align.py process_cal():139 [1] Processing dorado_2005.301.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.301.00 INFO 2025-06-26 11:01:42,894 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:42,898 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:42,995 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:43,000 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:43,092 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:43,098 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:43,156 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:01:43,156 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:01:43,194 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:43,200 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:43,298 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:43,303 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,384 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:43,389 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,469 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:43,474 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,557 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,562 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,642 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,647 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,727 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,732 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,813 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,818 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,897 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,902 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:43,984 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:43,989 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,071 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,076 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,155 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,160 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,240 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,245 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,327 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,332 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,413 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,418 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,500 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,505 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,587 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,592 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,673 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,678 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,759 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,764 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,844 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,850 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:44,930 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.301.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:44,934 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:45,040 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:45,111 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:45,180 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:45,253 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:01:45,330 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:45,394 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_align.nc INFO 2025-06-26 11:01:45,486 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:01:45,489 process.py resample():273 [1] Resampling steps for 2005.301.00 INFO 2025-06-26 11:01:45,489 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:01:45,516 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_align.nc mission netCDF file INFO 2025-06-26 11:01:45,522 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_align.nc mission netCDF file INFO 2025-06-26 11:01:45,524 resample.py get_mission_start_end():1145 [1] navigation: 2005-10-28T01:21:26.769906304 to 2005-10-28T08:53:34.951498496 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:01:45,526 resample.py get_mission_start_end():1145 [1] hs2 : 2005-10-28T01:21:09.011122944 to 2005-10-28T08:53:34.891502592 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 11:01:45,527 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-10-28T01:21:31.819560320 to 2005-10-28T08:53:34.911501440 (0 days 00:00:00.039997056 before mission_end) INFO 2025-06-26 11:01:45,529 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-10-28T01:21:32.039545344 to 2005-10-28T08:53:34.901501952 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 11:01:45,531 resample.py get_mission_start_end():1145 [1] isus : 2005-10-28T01:22:30.835517440 to 2005-10-28T08:53:34.931499904 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 11:01:45,532 resample.py get_mission_start_end():1145 [1] biolume : 2005-10-28T01:21:04.171420160 to 2005-10-28T08:53:34.281510144 (0 days 00:00:00.669988352 before mission_end) INFO 2025-06-26 11:01:45,534 resample.py get_mission_start_end():1145 [1] tailcone : 2005-10-28T01:21:04.561427584 to 2005-10-28T08:53:34.931499904 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 11:01:45,535 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_align.nc mission netCDF file INFO 2025-06-26 11:01:45,535 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:45,826 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:45,875 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:45,922 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:45,970 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,014 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,056 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,096 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,136 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,174 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,212 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,251 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,290 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,329 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,368 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,406 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,444 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,484 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,525 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,565 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,605 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,644 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,683 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,702 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,718 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,733 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,751 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:46,797 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:47,049 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_1S.nc INFO 2025-06-26 11:01:48,468 create_products.py gulper_odv():401 [1] No gulper times found for 2005.301.00 INFO 2025-06-26 11:01:48,468 process.py archive():337 [1] Archiving steps for 2005.301.00 INFO 2025-06-26 11:01:48,468 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00, BASE_PATH = /data/auv_data INFO 2025-06-26 11:01:48,469 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:01:48,471 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.301.00_1S.nc INFO 2025-06-26 11:01:48,495 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:48,495 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.301.00_cal.nc INFO 2025-06-26 11:01:48,618 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:48,620 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.301.00_align.nc INFO 2025-06-26 11:01:48,726 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:48,757 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,788 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,793 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,815 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,908 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,916 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,953 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:48,980 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:49,058 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005301/2005.301.00 done. INFO 2025-06-26 11:01:49,058 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:01:49,058 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.301.00/dorado_2005.301.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf