INFO 2025-06-26 11:00:45,138 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 11:00:45,138 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 10/26/05 - ctdToUse = ctd1 INFO 2025-06-26 11:00:45,139 process.py process_mission():449 [1] Processing AUVCTD mission 2005.299.12 by user docker_user on host eae60d30a712 INFO 2025-06-26 11:00:45,139 process.py download_process():165 [1] Download and processing steps for 2005.299.12 INFO 2025-06-26 11:00:45,139 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005299/2005.299.12 INFO 2025-06-26 11:00:45,139 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005299/2005.299.12 to /data/auv_data/dorado/missionlogs/2005.299.12 INFO 2025-06-26 11:00:48,103 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.299.12 INFO 2025-06-26 11:00:48,103 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/ctdDriver.log (6539851 bytes) INFO 2025-06-26 11:00:48,666 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/ctdDriver2.log (6540021 bytes) INFO 2025-06-26 11:00:49,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/gps.log (55076 bytes) INFO 2025-06-26 11:00:49,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/hydroscatlog.log (4462994 bytes) INFO 2025-06-26 11:00:49,742 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/navigation.log (21929954 bytes) INFO 2025-06-26 11:00:51,346 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/isuslog.log (375477 bytes) INFO 2025-06-26 11:00:51,385 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/parosci.log (9568118 bytes) INFO 2025-06-26 11:00:52,172 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.299.12/parosci.log: [116450] INFO 2025-06-26 11:00:52,197 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/tailCone.log (4465243 bytes) INFO 2025-06-26 11:00:52,759 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.299.12/biolume.log (5063964 bytes) INFO 2025-06-26 11:00:53,245 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 11:00:53,510 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.41 seconds WARNING 2025-06-26 11:00:53,511 process.py download_process():196 [1] No lopc.bin file for 2005.299.12 INFO 2025-06-26 11:00:53,511 process.py calibrate():227 [1] Calibration steps for 2005.299.12 INFO 2025-06-26 11:00:53,684 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 11:00:53,686 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 11:00:55,342 calibrate.py _nudge_pos():1806 [1] 186: 0.060 0.0017423 0.0001449 3385 11.28 22.941 2.380 2005-10-26T16:58:25.043921280 INFO 2025-06-26 11:00:56,260 calibrate.py _nudge_pos():1806 [1] 281: 0.070 0.0040936 0.0027148 13060 43.53 13.966 11.556 2005-10-26T17:43:31.048547072 INFO 2025-06-26 11:00:56,951 calibrate.py _nudge_pos():1806 [1] 351: 0.060 0.0082454 -0.0013533 12975 43.25 28.314 -5.799 2005-10-26T18:27:55.046050816 INFO 2025-06-26 11:00:57,515 calibrate.py _nudge_pos():1806 [1] 407: 0.060 0.0059828 -0.0003420 12025 40.08 22.165 -1.581 2005-10-26T19:08:55.047529216 INFO 2025-06-26 11:00:58,134 calibrate.py _nudge_pos():1806 [1] 470: 0.070 0.0046229 0.0010826 10490 34.96 19.631 5.738 2005-10-26T19:44:55.049558912 INFO 2025-06-26 11:00:58,655 calibrate.py _nudge_pos():1806 [1] 524: 0.070 0.0032431 0.0021540 10475 34.91 13.790 11.432 2005-10-26T20:20:43.042411264 INFO 2025-06-26 11:00:59,203 calibrate.py _nudge_pos():1806 [1] 580: 0.080 0.0029131 0.0020415 10585 35.28 12.257 10.723 2005-10-26T20:56:55.043618944 INFO 2025-06-26 11:00:59,801 calibrate.py _nudge_pos():1806 [1] 641: 0.070 0.0025284 0.0018660 11970 39.90 9.407 8.666 2005-10-26T21:37:49.045508352 INFO 2025-06-26 11:01:00,370 calibrate.py _nudge_pos():1806 [1] 698: 0.080 0.0008362 0.0003865 4340 14.46 8.582 4.952 2005-10-26T21:53:13.042210304 INFO 2025-06-26 11:01:00,909 calibrate.py _nudge_pos():1862 [1] 732: - - - 1 0.00 - - INFO 2025-06-26 11:01:00,909 calibrate.py _nudge_pos():1868 [1] Points in final series = 92915 WARNING 2025-06-26 11:01:04,214 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 11:01:04,906 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:05,697 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:06,264 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 11:01:06,266 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.299.12/ctd1.nc INFO 2025-06-26 11:01:06,267 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 11:01:06,267 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:01:06,268 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 11:01:06,946 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:01:07,523 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 11:01:07,525 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.299.12/ctd2.nc INFO 2025-06-26 11:01:07,526 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 11:01:07,527 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 11:01:07,527 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 11:01:07,556 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 11:01:08,379 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [1059060] INFO 2025-06-26 11:01:08,557 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 11:01:08,562 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 11:01:08,563 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.299.12 ERROR 2025-06-26 11:01:08,563 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.299.12 INFO 2025-06-26 11:01:08,710 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_cal.nc INFO 2025-06-26 11:01:08,806 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 11:01:08,811 process.py align():251 [1] Alignment steps for 2005.299.12 INFO 2025-06-26 11:01:08,840 align.py process_cal():139 [1] Processing dorado_2005.299.12_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.299.12 INFO 2025-06-26 11:01:08,868 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:08,872 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:08,939 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:08,943 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:09,010 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:09,015 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:09,056 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 11:01:09,056 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 11:01:09,083 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 11:01:09,087 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:09,151 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:09,155 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,214 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:09,218 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,276 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 11:01:09,280 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,339 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,343 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,405 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,409 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,468 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,472 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,532 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,536 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,602 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,607 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,670 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,674 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,736 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,742 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,825 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,829 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,889 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,893 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:09,954 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:09,957 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,028 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,033 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,095 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,099 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,158 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,163 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,221 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,226 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,286 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,290 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,349 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,354 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,414 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.299.12_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 11:01:10,417 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 11:01:10,492 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:10,544 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:10,596 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 11:01:10,650 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 11:01:10,708 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 11:01:10,755 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_align.nc INFO 2025-06-26 11:01:10,838 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 11:01:10,840 process.py resample():273 [1] Resampling steps for 2005.299.12 INFO 2025-06-26 11:01:10,841 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 11:01:10,867 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_align.nc mission netCDF file INFO 2025-06-26 11:01:10,873 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_align.nc mission netCDF file INFO 2025-06-26 11:01:10,875 resample.py get_mission_start_end():1145 [1] navigation: 2005-10-26T16:44:24.451505664 to 2005-10-26T21:54:07.248496768 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 11:01:10,876 resample.py get_mission_start_end():1145 [1] hs2 : 2005-10-26T16:44:07.502666752 to 2005-10-26T21:54:07.258496256 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 11:01:10,878 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-10-26T16:44:30.731075584 to 2005-10-26T21:54:07.278494848 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 11:01:10,880 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-10-26T16:44:30.341102080 to 2005-10-26T21:54:07.378488064 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 11:01:10,882 resample.py get_mission_start_end():1145 [1] isus : 2005-10-26T16:45:28.547114880 to 2005-10-26T21:54:06.118574080 (0 days 00:00:01.289911808 before mission_end) INFO 2025-06-26 11:01:10,883 resample.py get_mission_start_end():1145 [1] biolume : 2005-10-26T16:44:02.382983168 to 2005-10-26T21:54:06.388521472 (0 days 00:00:01.019964416 before mission_end) INFO 2025-06-26 11:01:10,885 resample.py get_mission_start_end():1145 [1] tailcone : 2005-10-26T16:44:02.992975744 to 2005-10-26T21:54:07.408485888 (0 days 00:00:00 before mission_end) INFO 2025-06-26 11:01:10,885 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_align.nc mission netCDF file INFO 2025-06-26 11:01:10,886 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,096 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,133 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,168 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,203 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,235 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,266 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,299 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,330 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,361 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,391 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,421 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,450 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,479 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,508 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,537 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,566 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,597 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,629 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,659 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,692 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,722 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,753 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,769 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,782 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,795 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,810 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:11,845 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 11:01:12,056 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_1S.nc INFO 2025-06-26 11:01:13,299 create_products.py gulper_odv():401 [1] No gulper times found for 2005.299.12 INFO 2025-06-26 11:01:13,299 process.py archive():337 [1] Archiving steps for 2005.299.12 INFO 2025-06-26 11:01:13,299 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12, BASE_PATH = /data/auv_data INFO 2025-06-26 11:01:13,300 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 11:01:13,301 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.299.12_1S.nc INFO 2025-06-26 11:01:13,319 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:13,320 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.299.12_cal.nc INFO 2025-06-26 11:01:13,412 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:13,413 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.299.12_align.nc INFO 2025-06-26 11:01:13,489 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 11:01:13,515 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,540 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,545 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,562 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,681 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,736 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005299/2005.299.12 done. INFO 2025-06-26 11:01:13,737 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 11:01:13,737 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.299.12/dorado_2005.299.12_processing.log /Volumes/AUVCTD/surveys/2005/netcdf