INFO 2025-06-26 10:59:05,361 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:59:05,361 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled by DMO 9/7/05 - ctdToUse = ctd1 INFO 2025-06-26 10:59:05,361 process.py process_mission():449 [1] Processing LOCO mission 2005.250.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:59:05,361 process.py download_process():165 [1] Download and processing steps for 2005.250.00 INFO 2025-06-26 10:59:05,361 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005250/2005.250.00 INFO 2025-06-26 10:59:05,361 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005250/2005.250.00 to /data/auv_data/dorado/missionlogs/2005.250.00 INFO 2025-06-26 10:59:07,662 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.250.00 INFO 2025-06-26 10:59:07,663 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/ctdDriver.log (4759875 bytes) INFO 2025-06-26 10:59:08,004 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/ctdDriver2.log (4759869 bytes) INFO 2025-06-26 10:59:08,350 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/gps.log (64508 bytes) INFO 2025-06-26 10:59:08,365 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/hydroscatlog.log (3249914 bytes) INFO 2025-06-26 10:59:08,749 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/navigation.log (15962222 bytes) INFO 2025-06-26 10:59:09,904 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/isuslog.log (289685 bytes) INFO 2025-06-26 10:59:09,936 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/parosci.log (6952166 bytes) INFO 2025-06-26 10:59:10,536 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/tailCone.log (3251659 bytes) INFO 2025-06-26 10:59:10,935 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.250.00/biolume.log (3688188 bytes) INFO 2025-06-26 10:59:11,283 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:59:11,474 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.81 seconds WARNING 2025-06-26 10:59:11,474 process.py download_process():196 [1] No lopc.bin file for 2005.250.00 INFO 2025-06-26 10:59:11,474 process.py calibrate():227 [1] Calibration steps for 2005.250.00 INFO 2025-06-26 10:59:11,616 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:59:11,617 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:59:12,340 calibrate.py _nudge_pos():1806 [1] 93: 0.200 0.0004156 -0.0004012 4535 15.11 4.080 -4.919 2005-09-07T15:22:54.911659008 INFO 2025-06-26 10:59:13,198 calibrate.py _nudge_pos():1806 [1] 183: 0.190 -0.0001925 0.0006426 8465 28.21 -1.012 4.221 2005-09-07T15:52:36.909583744 INFO 2025-06-26 10:59:13,305 calibrate.py _nudge_pos():1806 [1] 194: 0.200 0.0000063 -0.0000248 15 0.05 19.870 -98.383 2005-09-07T15:52:49.908693376 INFO 2025-06-26 10:59:14,228 calibrate.py _nudge_pos():1806 [1] 291: 0.190 -0.0017633 0.0003921 8065 26.88 -9.728 2.703 2005-09-07T16:21:18.911618688 INFO 2025-06-26 10:59:15,189 calibrate.py _nudge_pos():1806 [1] 391: 0.010 -0.0013939 0.0004422 7996 26.65 -7.754 3.075 2005-09-07T16:49:37.115283712 INFO 2025-06-26 10:59:16,117 calibrate.py _nudge_pos():1806 [1] 487: 0.200 -0.0011182 0.0003192 5734 19.11 -8.673 3.096 2005-09-07T17:10:18.910214912 INFO 2025-06-26 10:59:17,030 calibrate.py _nudge_pos():1806 [1] 581: 0.190 -0.0017893 -0.0017840 7064 23.54 -11.263 -14.041 2005-09-07T17:35:24.917046272 INFO 2025-06-26 10:59:17,950 calibrate.py _nudge_pos():1806 [1] 676: 0.200 -0.0024001 -0.0019268 7989 26.63 -13.355 -13.409 2005-09-07T18:03:36.911136896 INFO 2025-06-26 10:59:18,906 calibrate.py _nudge_pos():1806 [1] 770: 0.010 -0.0025097 -0.0019859 8895 29.65 -12.539 -12.412 2005-09-07T18:34:49.112882176 INFO 2025-06-26 10:59:19,710 calibrate.py _nudge_pos():1806 [1] 852: 0.010 -0.0014652 -0.0010378 4606 15.35 -14.137 -12.528 2005-09-07T18:51:31.114240384 INFO 2025-06-26 10:59:20,025 calibrate.py _nudge_pos():1862 [1] 862: - - - 1 0.00 - - INFO 2025-06-26 10:59:20,025 calibrate.py _nudge_pos():1868 [1] Points in final series = 67398 WARNING 2025-06-26 10:59:20,141 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:59:20,689 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:59:21,213 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:59:21,623 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:59:21,625 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.250.00/ctd1.nc INFO 2025-06-26 10:59:21,626 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:59:21,627 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:59:21,627 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:59:22,122 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:59:22,532 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:59:22,534 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.250.00/ctd2.nc INFO 2025-06-26 10:59:22,535 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:59:22,536 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:59:22,536 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:59:22,559 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:59:23,219 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 345000] INFO 2025-06-26 10:59:23,346 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:59:23,351 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:59:23,352 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.250.00 ERROR 2025-06-26 10:59:23,352 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.250.00 INFO 2025-06-26 10:59:23,408 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_cal.nc INFO 2025-06-26 10:59:23,485 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:59:23,489 process.py align():251 [1] Alignment steps for 2005.250.00 INFO 2025-06-26 10:59:23,516 align.py process_cal():139 [1] Processing dorado_2005.250.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.250.00 INFO 2025-06-26 10:59:23,539 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:59:23,542 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:59:23,595 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:59:23,599 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:59:23,650 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:59:23,653 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:59:23,684 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:59:23,684 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:59:23,704 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:59:23,708 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:59:23,758 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:59:23,761 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:23,807 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:59:23,810 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:23,854 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:59:23,857 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:23,901 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:23,904 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:23,950 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:23,954 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:23,998 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,002 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,048 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,051 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,097 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,100 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,145 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,148 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,192 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,196 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,241 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,244 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,289 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,292 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,337 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,340 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,386 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,390 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,437 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,441 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,486 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,490 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,535 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,539 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,585 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,589 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,635 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,639 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,684 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.250.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:59:24,687 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:59:24,748 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:59:24,789 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:59:24,830 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:59:24,872 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:59:24,918 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:59:24,956 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_align.nc INFO 2025-06-26 10:59:25,026 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:59:25,029 process.py resample():273 [1] Resampling steps for 2005.250.00 INFO 2025-06-26 10:59:25,029 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:59:25,053 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_align.nc mission netCDF file INFO 2025-06-26 10:59:25,059 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_align.nc mission netCDF file INFO 2025-06-26 10:59:25,060 resample.py get_mission_start_end():1145 [1] navigation: 2005-09-07T15:06:36.928655360 to 2005-09-07T18:52:02.312103296 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 10:59:25,062 resample.py get_mission_start_end():1145 [1] hs2 : 2005-09-07T15:06:19.639839872 to 2005-09-07T18:52:02.322102528 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 10:59:25,063 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-09-07T15:06:42.558269696 to 2005-09-07T18:52:02.462092928 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:59:25,065 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-09-07T15:06:42.518272640 to 2005-09-07T18:52:02.442094336 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:59:25,066 resample.py get_mission_start_end():1145 [1] isus : 2005-09-07T15:07:48.563748096 to 2005-09-07T18:52:01.642149248 (0 days 00:00:00.819943680 before mission_end) INFO 2025-06-26 10:59:25,068 resample.py get_mission_start_end():1145 [1] biolume : 2005-09-07T15:06:14.580152320 to 2005-09-07T18:52:01.082153344 (0 days 00:00:01.379939584 before mission_end) INFO 2025-06-26 10:59:25,070 resample.py get_mission_start_end():1145 [1] tailcone : 2005-09-07T15:06:15.030155648 to 2005-09-07T18:52:02.402097024 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:59:25,070 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_align.nc mission netCDF file INFO 2025-06-26 10:59:25,071 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,231 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,259 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,286 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,314 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,339 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,363 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,388 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,412 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,435 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,458 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,481 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,504 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,527 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,550 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,579 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,602 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,626 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,651 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,675 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,699 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,722 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,746 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,759 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,771 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,782 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,796 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,823 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:59:25,996 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_1S.nc INFO 2025-06-26 10:59:27,080 create_products.py gulper_odv():401 [1] No gulper times found for 2005.250.00 INFO 2025-06-26 10:59:27,081 process.py archive():337 [1] Archiving steps for 2005.250.00 INFO 2025-06-26 10:59:27,081 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:59:27,082 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:59:27,083 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.250.00_1S.nc INFO 2025-06-26 10:59:27,098 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:59:27,099 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.250.00_cal.nc INFO 2025-06-26 10:59:27,157 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:59:27,158 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.250.00_align.nc INFO 2025-06-26 10:59:27,217 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:59:27,237 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,254 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,258 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,271 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,315 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,320 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,343 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,359 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,400 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005250/2005.250.00 done. INFO 2025-06-26 10:59:27,400 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:59:27,400 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.250.00/dorado_2005.250.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf