INFO 2025-06-26 10:57:42,612 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:57:42,612 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:57:42,612 process.py process_mission():449 [1] Processing LOCO mission 2005.244.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:57:42,612 process.py download_process():165 [1] Download and processing steps for 2005.244.02 INFO 2025-06-26 10:57:42,612 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005244/2005.244.02 INFO 2025-06-26 10:57:42,612 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005244/2005.244.02 to /data/auv_data/dorado/missionlogs/2005.244.02 INFO 2025-06-26 10:57:45,817 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.244.02 INFO 2025-06-26 10:57:45,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/ctdDriver.log (8229891 bytes) INFO 2025-06-26 10:57:46,416 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/ctdDriver2.log (8229709 bytes) INFO 2025-06-26 10:57:47,012 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/gps.log (109580 bytes) INFO 2025-06-26 10:57:47,031 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/hydroscatlog.log (5614214 bytes) INFO 2025-06-26 10:57:47,705 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/navigation.log (27595606 bytes) INFO 2025-06-26 10:57:49,659 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/isuslog.log (501813 bytes) INFO 2025-06-26 10:57:49,710 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/parosci.log (12011510 bytes) INFO 2025-06-26 10:57:50,712 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/tailCone.log (5617483 bytes) INFO 2025-06-26 10:57:51,409 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.02/biolume.log (6370108 bytes) INFO 2025-06-26 10:57:52,014 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:57:52,347 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.53 seconds WARNING 2025-06-26 10:57:52,347 process.py download_process():196 [1] No lopc.bin file for 2005.244.02 INFO 2025-06-26 10:57:52,347 process.py calibrate():227 [1] Calibration steps for 2005.244.02 INFO 2025-06-26 10:57:52,544 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:57:52,546 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:57:53,239 calibrate.py _nudge_pos():1806 [1] 90: 0.160 -0.0001371 0.0000906 8045 26.81 -0.757 0.626 2005-09-01T09:19:06.039077504 INFO 2025-06-26 10:57:54,141 calibrate.py _nudge_pos():1806 [1] 184: 0.150 -0.0002051 0.0000469 8445 28.15 -1.080 0.309 2005-09-01T09:48:48.037002368 INFO 2025-06-26 10:57:54,948 calibrate.py _nudge_pos():1806 [1] 269: 0.160 -0.0002709 -0.0000094 8820 29.40 -1.366 -0.059 2005-09-01T10:19:36.040405248 INFO 2025-06-26 10:57:55,796 calibrate.py _nudge_pos():1806 [1] 359: 0.160 -0.0001941 0.0000329 8255 27.51 -1.046 0.222 2005-09-01T10:48:36.041207040 INFO 2025-06-26 10:57:56,781 calibrate.py _nudge_pos():1806 [1] 462: 0.160 -0.0001707 -0.0000346 8370 27.90 -0.907 -0.230 2005-09-01T11:18:12.039542912 INFO 2025-06-26 10:57:57,620 calibrate.py _nudge_pos():1806 [1] 550: 0.170 0.0005728 -0.0006283 9285 30.95 2.747 -3.762 2005-09-01T11:50:36.036370048 INFO 2025-06-26 10:57:58,475 calibrate.py _nudge_pos():1806 [1] 639: 0.160 -0.0007382 0.0007523 8650 28.83 -3.798 4.836 2005-09-01T12:20:54.041828096 INFO 2025-06-26 10:57:59,258 calibrate.py _nudge_pos():1806 [1] 720: 0.170 -0.0015581 0.0003741 8060 26.86 -8.601 2.581 2005-09-01T12:49:06.035918464 INFO 2025-06-26 10:58:00,105 calibrate.py _nudge_pos():1806 [1] 807: 0.170 -0.0013276 0.0003709 7640 25.46 -7.729 2.699 2005-09-01T13:16:00.035351936 INFO 2025-06-26 10:58:00,998 calibrate.py _nudge_pos():1806 [1] 899: 0.170 -0.0009552 0.0002596 5695 18.98 -7.459 2.535 2005-09-01T13:36:30.041090944 INFO 2025-06-26 10:58:01,100 calibrate.py _nudge_pos():1806 [1] 909: 0.170 0.0000851 -0.0001028 130 0.43 29.337 -44.324 2005-09-01T13:37:05.038693376 INFO 2025-06-26 10:58:01,968 calibrate.py _nudge_pos():1806 [1] 998: 0.180 -0.0017967 -0.0017391 7035 23.45 -11.356 -13.744 2005-09-01T14:02:00.036278912 INFO 2025-06-26 10:58:02,833 calibrate.py _nudge_pos():1806 [1] 1086: 0.180 -0.0023380 -0.0018705 8085 26.95 -12.855 -12.863 2005-09-01T14:30:24.039546752 INFO 2025-06-26 10:58:03,754 calibrate.py _nudge_pos():1806 [1] 1180: 0.170 -0.0023069 -0.0019307 8205 27.35 -12.495 -13.082 2005-09-01T14:59:18.040759552 INFO 2025-06-26 10:58:04,749 calibrate.py _nudge_pos():1806 [1] 1282: 0.170 -0.0015064 -0.0009551 4835 16.11 -13.846 -10.983 2005-09-01T15:17:06.037596672 INFO 2025-06-26 10:58:06,988 calibrate.py _nudge_pos():1862 [1] 1489: - - - 5 0.01 - - INFO 2025-06-26 10:58:06,988 calibrate.py _nudge_pos():1868 [1] Points in final series = 116919 WARNING 2025-06-26 10:58:07,180 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:58:07,341 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 93555 INFO 2025-06-26 10:58:08,058 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:58:09,024 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:58:09,730 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:58:09,733 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.244.02/ctd1.nc INFO 2025-06-26 10:58:09,734 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:58:09,735 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:58:09,735 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:58:10,576 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:58:11,283 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:58:11,285 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.244.02/ctd2.nc INFO 2025-06-26 10:58:11,287 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:58:11,287 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:58:11,287 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:58:11,323 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:58:12,397 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 840 841 842 4140 4141 4142 6900 104580 106380 106381 106382] INFO 2025-06-26 10:58:12,613 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:58:12,619 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:58:12,619 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.244.02 ERROR 2025-06-26 10:58:12,619 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.244.02 INFO 2025-06-26 10:58:12,711 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_cal.nc INFO 2025-06-26 10:58:12,812 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:58:12,816 process.py align():251 [1] Alignment steps for 2005.244.02 INFO 2025-06-26 10:58:12,845 align.py process_cal():139 [1] Processing dorado_2005.244.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.244.02 INFO 2025-06-26 10:58:12,880 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:58:12,883 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:58:12,974 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:58:12,979 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:58:13,064 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:58:13,069 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:58:13,119 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:58:13,120 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:58:13,152 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:58:13,158 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:58:13,241 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:58:13,245 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,317 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:58:13,321 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,392 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:58:13,396 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,469 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,473 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,546 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,551 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,625 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,630 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,702 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,707 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,777 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,782 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,855 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,859 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:13,931 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:13,937 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,010 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,014 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,088 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,093 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,166 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,170 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,242 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,247 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,321 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,326 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,400 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,405 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,477 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,482 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,555 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,560 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,634 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,639 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,712 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:58:14,717 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:58:14,809 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:58:14,871 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:58:14,934 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:58:15,000 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:58:15,070 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:58:15,129 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_align.nc INFO 2025-06-26 10:58:15,212 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:58:15,214 process.py resample():273 [1] Resampling steps for 2005.244.02 INFO 2025-06-26 10:58:15,215 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:58:15,240 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_align.nc mission netCDF file INFO 2025-06-26 10:58:15,246 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_align.nc mission netCDF file INFO 2025-06-26 10:58:15,248 resample.py get_mission_start_end():1145 [1] navigation: 2005-09-01T08:51:09.853904000 to 2005-09-01T15:20:54.041977344 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 10:58:15,250 resample.py get_mission_start_end():1145 [1] hs2 : 2005-09-01T08:50:54.034987648 to 2005-09-01T15:20:54.111972608 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:58:15,251 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-09-01T08:51:16.433453312 to 2005-09-01T15:20:54.121971840 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:58:15,253 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-09-01T08:51:16.973416320 to 2005-09-01T15:20:54.181967744 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:58:15,254 resample.py get_mission_start_end():1145 [1] isus : 2005-09-01T08:52:20.509063680 to 2005-09-01T15:20:53.422019968 (0 days 00:00:00.759947776 before mission_end) INFO 2025-06-26 10:58:15,256 resample.py get_mission_start_end():1145 [1] biolume : 2005-09-01T08:50:47.745384192 to 2005-09-01T15:20:53.261996544 (0 days 00:00:00.919971200 before mission_end) INFO 2025-06-26 10:58:15,257 resample.py get_mission_start_end():1145 [1] tailcone : 2005-09-01T08:50:48.255383552 to 2005-09-01T15:20:54.151969920 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:58:15,258 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_align.nc mission netCDF file INFO 2025-06-26 10:58:15,259 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,515 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,559 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,602 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,646 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,683 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,721 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,759 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,795 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,830 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,863 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,897 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,931 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:15,966 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,000 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,035 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,069 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,106 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,144 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,180 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,217 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,254 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,290 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,308 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,323 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,336 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,353 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,393 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:58:16,621 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_1S.nc INFO 2025-06-26 10:58:17,937 create_products.py gulper_odv():401 [1] No gulper times found for 2005.244.02 INFO 2025-06-26 10:58:17,937 process.py archive():337 [1] Archiving steps for 2005.244.02 INFO 2025-06-26 10:58:17,937 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:58:17,938 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:58:17,940 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.02_1S.nc INFO 2025-06-26 10:58:17,961 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:58:17,962 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.02_cal.nc INFO 2025-06-26 10:58:18,066 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:58:18,067 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.02_align.nc INFO 2025-06-26 10:58:18,157 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:58:18,185 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,212 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,217 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,237 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,312 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,319 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,357 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,381 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,444 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.02 done. INFO 2025-06-26 10:58:18,444 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:58:18,444 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.02/dorado_2005.244.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf