INFO 2025-06-26 10:57:07,699 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:57:07,699 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:57:07,699 process.py process_mission():449 [1] Processing LOCO mission 2005.244.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:57:07,699 process.py download_process():165 [1] Download and processing steps for 2005.244.01 INFO 2025-06-26 10:57:07,699 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005244/2005.244.01 INFO 2025-06-26 10:57:07,699 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005244/2005.244.01 to /data/auv_data/dorado/missionlogs/2005.244.01 INFO 2025-06-26 10:57:10,824 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.244.01 INFO 2025-06-26 10:57:10,825 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/ctdDriver.log (7943715 bytes) INFO 2025-06-26 10:57:11,415 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/ctdDriver2.log (7943621 bytes) INFO 2025-06-26 10:57:12,013 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/gps.log (102452 bytes) INFO 2025-06-26 10:57:12,033 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/hydroscatlog.log (5419574 bytes) INFO 2025-06-26 10:57:12,673 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/navigation.log (26635794 bytes) INFO 2025-06-26 10:57:14,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/isuslog.log (484757 bytes) INFO 2025-06-26 10:57:14,592 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/parosci.log (11594630 bytes) INFO 2025-06-26 10:57:15,576 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/tailCone.log (5422507 bytes) INFO 2025-06-26 10:57:16,243 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.244.01/biolume.log (6148972 bytes) INFO 2025-06-26 10:57:16,844 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:57:17,167 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.34 seconds WARNING 2025-06-26 10:57:17,168 process.py download_process():196 [1] No lopc.bin file for 2005.244.01 INFO 2025-06-26 10:57:17,168 process.py calibrate():227 [1] Calibration steps for 2005.244.01 INFO 2025-06-26 10:57:17,364 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:57:17,366 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:57:18,176 calibrate.py _nudge_pos():1806 [1] 97: 0.080 -0.0002142 -0.0006120 8110 27.03 -1.174 -4.195 2005-09-01T03:00:18.096048128 INFO 2025-06-26 10:57:19,220 calibrate.py _nudge_pos():1806 [1] 202: 0.080 -0.0001636 -0.0000052 7940 26.46 -0.916 -0.036 2005-09-01T03:28:30.100137984 INFO 2025-06-26 10:57:20,332 calibrate.py _nudge_pos():1806 [1] 313: 0.080 -0.0002639 0.0000316 8630 28.76 -1.360 0.204 2005-09-01T03:59:06.094363648 INFO 2025-06-26 10:57:21,198 calibrate.py _nudge_pos():1806 [1] 400: 0.080 -0.0003051 -0.0000030 8240 27.46 -1.648 -0.020 2005-09-01T04:28:00.095576576 INFO 2025-06-26 10:57:22,036 calibrate.py _nudge_pos():1806 [1] 486: 0.090 -0.0003838 -0.0000297 7795 25.98 -2.191 -0.212 2005-09-01T04:55:24.092955136 INFO 2025-06-26 10:57:22,876 calibrate.py _nudge_pos():1806 [1] 570: 0.090 -0.0000074 0.0000095 15 0.05 -23.437 37.672 2005-09-01T04:56:50.097063296 INFO 2025-06-26 10:57:23,052 calibrate.py _nudge_pos():1806 [1] 588: 0.080 -0.0006054 -0.0010079 9445 31.48 -2.854 -5.933 2005-09-01T05:28:36.096493440 INFO 2025-06-26 10:57:23,948 calibrate.py _nudge_pos():1806 [1] 680: 0.100 -0.0010434 0.0008596 8725 29.08 -5.322 5.477 2005-09-01T05:59:12.100718464 INFO 2025-06-26 10:57:24,944 calibrate.py _nudge_pos():1806 [1] 782: 0.080 -0.0013393 0.0003167 8195 27.31 -7.272 2.149 2005-09-01T06:28:12.101520256 INFO 2025-06-26 10:57:25,944 calibrate.py _nudge_pos():1806 [1] 883: 0.090 -0.0010738 0.0005346 7540 25.13 -6.334 3.942 2005-09-01T06:55:00.101364864 INFO 2025-06-26 10:57:26,947 calibrate.py _nudge_pos():1806 [1] 983: 0.090 -0.0008038 0.0000979 5415 18.05 -6.602 1.005 2005-09-01T07:14:42.100392320 INFO 2025-06-26 10:57:27,874 calibrate.py _nudge_pos():1806 [1] 1076: 0.100 -0.0019498 -0.0018234 6530 21.76 -13.277 -15.525 2005-09-01T07:38:00.094623104 INFO 2025-06-26 10:57:28,973 calibrate.py _nudge_pos():1806 [1] 1184: 0.110 -0.0023023 -0.0019579 7535 25.11 -13.582 -14.446 2005-09-01T08:04:54.094056576 INFO 2025-06-26 10:57:29,874 calibrate.py _nudge_pos():1806 [1] 1273: 0.110 -0.0024116 -0.0019549 7450 24.83 -14.387 -14.589 2005-09-01T08:31:12.095956096 INFO 2025-06-26 10:57:30,881 calibrate.py _nudge_pos():1806 [1] 1373: 0.100 -0.0014397 -0.0010271 4425 14.75 -14.460 -12.906 2005-09-01T08:47:36.098547200 INFO 2025-06-26 10:57:31,274 calibrate.py _nudge_pos():1862 [1] 1389: - - - 1 0.00 - - INFO 2025-06-26 10:57:31,275 calibrate.py _nudge_pos():1868 [1] Points in final series = 112855 WARNING 2025-06-26 10:57:31,526 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:57:32,374 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:57:33,258 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:57:33,949 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:57:33,952 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.244.01/ctd1.nc INFO 2025-06-26 10:57:33,953 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:57:33,953 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:57:33,953 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:57:34,771 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:57:35,464 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:57:35,466 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.244.01/ctd2.nc INFO 2025-06-26 10:57:35,468 calibrate.py _range_qc_combined_nc():898 [1] Setting 259 ctd2_salinity values to NaN INFO 2025-06-26 10:57:35,468 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:57:35,468 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:57:35,503 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:57:36,543 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 955980 1204380 1204381] INFO 2025-06-26 10:57:36,758 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:57:36,764 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:57:36,764 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.244.01 ERROR 2025-06-26 10:57:36,764 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.244.01 INFO 2025-06-26 10:57:36,853 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_cal.nc INFO 2025-06-26 10:57:36,952 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:57:36,957 process.py align():251 [1] Alignment steps for 2005.244.01 INFO 2025-06-26 10:57:36,986 align.py process_cal():139 [1] Processing dorado_2005.244.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.244.01 INFO 2025-06-26 10:57:37,021 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:37,025 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:37,112 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:37,118 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:37,199 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:37,204 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:37,255 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:57:37,255 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:57:37,288 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:57:37,293 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:37,370 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:37,375 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,445 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:37,450 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,518 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:57:37,523 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,595 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,600 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,672 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,677 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,747 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,751 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,822 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,827 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,898 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,903 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:37,975 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:37,980 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,054 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,059 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,134 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,139 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,214 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,219 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,291 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,296 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,367 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,371 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,443 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,447 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,518 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,524 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,600 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,605 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,678 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,683 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,755 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,760 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,831 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.244.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:57:38,835 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:57:38,927 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:38,990 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:39,054 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:57:39,122 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:57:39,195 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:57:39,253 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_align.nc INFO 2025-06-26 10:57:39,338 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:57:39,340 process.py resample():273 [1] Resampling steps for 2005.244.01 INFO 2025-06-26 10:57:39,340 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:57:39,366 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_align.nc mission netCDF file INFO 2025-06-26 10:57:39,372 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_align.nc mission netCDF file INFO 2025-06-26 10:57:39,373 resample.py get_mission_start_end():1145 [1] navigation: 2005-09-01T02:32:02.502204416 to 2005-09-01T08:48:13.295999104 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:57:39,375 resample.py get_mission_start_end():1145 [1] hs2 : 2005-09-01T02:31:44.913409280 to 2005-09-01T08:48:13.266001280 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:57:39,376 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-09-01T02:32:08.521791872 to 2005-09-01T08:48:13.266001280 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:57:39,378 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-09-01T02:32:08.711778816 to 2005-09-01T08:48:13.186006528 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 10:57:39,380 resample.py get_mission_start_end():1145 [1] isus : 2005-09-01T02:33:12.657398400 to 2005-09-01T08:48:13.006018816 (0 days 00:00:00.289980288 before mission_end) INFO 2025-06-26 10:57:39,381 resample.py get_mission_start_end():1145 [1] biolume : 2005-09-01T02:31:40.083705856 to 2005-09-01T08:48:12.676007296 (0 days 00:00:00.619991808 before mission_end) INFO 2025-06-26 10:57:39,382 resample.py get_mission_start_end():1145 [1] tailcone : 2005-09-01T02:31:40.293725696 to 2005-09-01T08:48:13.276000512 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:57:39,383 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_align.nc mission netCDF file INFO 2025-06-26 10:57:39,384 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,635 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,677 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,719 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,761 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,800 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,837 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,873 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,910 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,945 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:39,978 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,014 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,049 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,084 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,118 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,152 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,185 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,222 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,257 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,294 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,329 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,363 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,397 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,414 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,429 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,443 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,460 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,499 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:57:40,727 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_1S.nc INFO 2025-06-26 10:57:41,984 create_products.py gulper_odv():401 [1] No gulper times found for 2005.244.01 INFO 2025-06-26 10:57:41,984 process.py archive():337 [1] Archiving steps for 2005.244.01 INFO 2025-06-26 10:57:41,984 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:57:41,985 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:57:41,992 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.01_1S.nc INFO 2025-06-26 10:57:42,024 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:42,025 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.01_cal.nc INFO 2025-06-26 10:57:42,138 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:42,139 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.244.01_align.nc INFO 2025-06-26 10:57:42,238 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:57:42,270 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,304 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,313 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,338 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,423 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,470 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,500 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,567 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005244/2005.244.01 done. INFO 2025-06-26 10:57:42,568 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:57:42,568 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.244.01/dorado_2005.244.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf