INFO 2025-06-26 10:55:56,271 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:55:56,271 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:55:56,271 process.py process_mission():449 [1] Processing LOCO mission 2005.243.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:55:56,271 process.py download_process():165 [1] Download and processing steps for 2005.243.02 INFO 2025-06-26 10:55:56,271 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.02 INFO 2025-06-26 10:55:56,272 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.02 to /data/auv_data/dorado/missionlogs/2005.243.02 INFO 2025-06-26 10:55:58,734 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.243.02 INFO 2025-06-26 10:55:58,735 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/ctdDriver.log (6018451 bytes) INFO 2025-06-26 10:55:59,194 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/ctdDriver2.log (6018357 bytes) INFO 2025-06-26 10:55:59,643 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/gps.log (58028 bytes) INFO 2025-06-26 10:55:59,658 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/hydroscatlog.log (4105694 bytes) INFO 2025-06-26 10:56:00,158 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/navigation.log (20171282 bytes) INFO 2025-06-26 10:56:01,621 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/isuslog.log (366805 bytes) INFO 2025-06-26 10:56:01,662 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/parosci.log (8783894 bytes) INFO 2025-06-26 10:56:02,420 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/tailCone.log (4107739 bytes) INFO 2025-06-26 10:56:02,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.02/biolume.log (4658956 bytes) INFO 2025-06-26 10:56:03,369 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:56:03,610 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.87 seconds WARNING 2025-06-26 10:56:03,610 process.py download_process():196 [1] No lopc.bin file for 2005.243.02 INFO 2025-06-26 10:56:03,610 process.py calibrate():227 [1] Calibration steps for 2005.243.02 INFO 2025-06-26 10:56:03,770 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:56:03,772 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:56:04,328 calibrate.py _nudge_pos():1806 [1] 76: 0.150 -0.0000564 0.0000515 15 0.05 -179.072 204.337 2005-08-31T04:54:58.451178112 INFO 2025-06-26 10:56:04,678 calibrate.py _nudge_pos():1806 [1] 112: 0.160 -0.0002846 0.0000459 8500 28.33 -1.490 0.300 2005-08-31T05:23:53.452322304 INFO 2025-06-26 10:56:05,154 calibrate.py _nudge_pos():1806 [1] 162: 0.150 -0.0003604 0.0000121 8035 26.78 -1.996 0.084 2005-08-31T05:51:29.448878720 INFO 2025-06-26 10:56:05,790 calibrate.py _nudge_pos():1806 [1] 229: 0.150 -0.0004802 -0.0011530 9000 30.00 -2.375 -7.123 2005-08-31T06:22:35.451048832 INFO 2025-06-26 10:56:06,302 calibrate.py _nudge_pos():1806 [1] 283: 0.150 -0.0013216 0.0006244 8985 29.95 -6.546 3.863 2005-08-31T06:53:25.454315008 INFO 2025-06-26 10:56:06,843 calibrate.py _nudge_pos():1806 [1] 340: 0.150 -0.0014701 0.0003777 8110 27.03 -8.066 2.590 2005-08-31T07:21:23.449364480 INFO 2025-06-26 10:56:07,466 calibrate.py _nudge_pos():1806 [1] 405: 0.160 -0.0012821 0.0004407 7480 24.93 -7.624 3.276 2005-08-31T07:47:23.452496768 INFO 2025-06-26 10:56:08,077 calibrate.py _nudge_pos():1806 [1] 469: 0.170 -0.0009944 0.0002844 5235 17.45 -8.448 3.021 2005-08-31T08:05:53.446457088 INFO 2025-06-26 10:56:08,576 calibrate.py _nudge_pos():1806 [1] 521: 0.160 -0.0018858 -0.0018478 6615 22.05 -12.676 -15.531 2005-08-31T08:28:47.452331264 INFO 2025-06-26 10:56:08,597 calibrate.py _nudge_pos():1806 [1] 523: 0.160 -0.0000278 0.0000741 35 0.11 -36.377 121.147 2005-08-31T08:28:55.451783168 INFO 2025-06-26 10:56:09,144 calibrate.py _nudge_pos():1806 [1] 580: 0.160 -0.0024106 -0.0020794 7540 25.13 -14.212 -15.333 2005-08-31T08:54:59.454641536 INFO 2025-06-26 10:56:09,906 calibrate.py _nudge_pos():1806 [1] 659: 0.170 -0.0025113 -0.0020776 7590 25.30 -14.705 -15.219 2005-08-31T09:21:35.445308928 INFO 2025-06-26 10:56:09,927 calibrate.py _nudge_pos():1806 [1] 661: 0.160 -0.0000375 -0.0000597 125 0.41 -13.420 -26.754 2005-08-31T09:22:01.453527168 INFO 2025-06-26 10:56:10,610 calibrate.py _nudge_pos():1806 [1] 732: 0.170 -0.0014787 -0.0010539 4410 14.70 -14.902 -13.288 2005-08-31T09:37:53.448311040 INFO 2025-06-26 10:56:11,203 calibrate.py _nudge_pos():1862 [1] 772: - - - 2 0.00 - - INFO 2025-06-26 10:56:11,203 calibrate.py _nudge_pos():1868 [1] Points in final series = 85462 WARNING 2025-06-26 10:56:11,346 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:56:11,539 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 68413 INFO 2025-06-26 10:56:12,062 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:12,718 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:56:13,232 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:56:13,234 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.243.02/ctd1.nc INFO 2025-06-26 10:56:13,235 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:56:13,236 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:56:13,236 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:56:13,853 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:14,370 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:56:14,372 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.243.02/ctd2.nc INFO 2025-06-26 10:56:14,373 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 10:56:14,374 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:56:14,374 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:56:14,402 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:56:15,141 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [619020] INFO 2025-06-26 10:56:15,297 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:56:15,302 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:56:15,302 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.02 ERROR 2025-06-26 10:56:15,302 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.02 INFO 2025-06-26 10:56:15,440 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_cal.nc INFO 2025-06-26 10:56:15,526 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:56:15,530 process.py align():251 [1] Alignment steps for 2005.243.02 INFO 2025-06-26 10:56:15,558 align.py process_cal():139 [1] Processing dorado_2005.243.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.243.02 INFO 2025-06-26 10:56:15,584 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:56:15,587 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:56:15,652 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:56:15,656 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:56:15,721 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:56:15,725 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:56:15,761 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:56:15,762 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:56:15,786 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:56:15,791 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:56:15,850 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:56:15,854 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:15,907 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:56:15,911 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:15,967 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:56:15,971 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,027 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,031 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,089 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,093 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,150 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,155 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,210 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,214 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,268 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,272 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,327 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,331 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,385 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,388 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,444 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,448 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,501 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,505 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,560 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,564 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,619 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,622 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,677 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,681 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,736 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,740 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,795 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,799 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,854 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,858 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,914 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,918 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:16,975 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:56:16,979 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:56:17,051 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:56:17,100 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:56:17,151 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:56:17,204 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:56:17,258 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:56:17,301 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_align.nc INFO 2025-06-26 10:56:17,373 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:56:17,376 process.py resample():273 [1] Resampling steps for 2005.243.02 INFO 2025-06-26 10:56:17,376 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:56:17,401 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_align.nc mission netCDF file INFO 2025-06-26 10:56:17,407 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_align.nc mission netCDF file INFO 2025-06-26 10:56:17,408 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-31T04:54:02.465013248 to 2005-08-31T09:38:54.854104576 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 10:56:17,410 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-31T04:53:44.686231168 to 2005-08-31T09:38:54.674116864 (0 days 00:00:00.189986944 before mission_end) INFO 2025-06-26 10:56:17,411 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-31T04:53:59.525214720 to 2005-08-31T09:38:54.864103808 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:56:17,413 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-31T04:53:59.645206400 to 2005-08-31T09:38:54.734112768 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 10:56:17,414 resample.py get_mission_start_end():1145 [1] isus : 2005-08-31T04:55:11.650273792 to 2005-08-31T09:38:51.264350464 (0 days 00:00:03.599753344 before mission_end) INFO 2025-06-26 10:56:17,416 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-31T04:53:38.776601728 to 2005-08-31T09:38:54.014127744 (0 days 00:00:00.849976064 before mission_end) INFO 2025-06-26 10:56:17,417 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-31T04:53:40.346528512 to 2005-08-31T09:38:54.744112000 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:56:17,418 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_align.nc mission netCDF file INFO 2025-06-26 10:56:17,418 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,615 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,650 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,685 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,719 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,750 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,779 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,808 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,836 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,864 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,890 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,917 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,944 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:17,973 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,000 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,028 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,056 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,085 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,114 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,143 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,172 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,204 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,233 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,248 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,262 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,274 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,289 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,322 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:56:18,516 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_1S.nc INFO 2025-06-26 10:56:19,604 create_products.py gulper_odv():401 [1] No gulper times found for 2005.243.02 INFO 2025-06-26 10:56:19,605 process.py archive():337 [1] Archiving steps for 2005.243.02 INFO 2025-06-26 10:56:19,605 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:56:19,605 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:56:19,606 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.02_1S.nc INFO 2025-06-26 10:56:19,623 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:56:19,624 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.02_cal.nc INFO 2025-06-26 10:56:19,701 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:56:19,702 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.02_align.nc INFO 2025-06-26 10:56:19,773 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:56:19,794 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,814 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,818 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,890 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,896 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,924 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,941 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,988 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.02 done. INFO 2025-06-26 10:56:19,988 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:56:19,988 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.02/dorado_2005.243.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf