INFO 2025-06-26 10:55:45,304 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:55:45,304 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:55:45,305 process.py process_mission():449 [1] Processing LOCO mission 2005.243.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:55:45,305 process.py download_process():165 [1] Download and processing steps for 2005.243.00 INFO 2025-06-26 10:55:45,305 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.00 INFO 2025-06-26 10:55:45,305 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005243/2005.243.00 to /data/auv_data/dorado/missionlogs/2005.243.00 INFO 2025-06-26 10:55:46,847 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.243.00 INFO 2025-06-26 10:55:46,848 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/ctdDriver.log (2124803 bytes) INFO 2025-06-26 10:55:47,017 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/ctdDriver2.log (2124709 bytes) INFO 2025-06-26 10:55:47,181 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/gps.log (28292 bytes) INFO 2025-06-26 10:55:47,193 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/hydroscatlog.log (1453934 bytes) INFO 2025-06-26 10:55:47,383 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/navigation.log (7128742 bytes) INFO 2025-06-26 10:55:47,921 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/isuslog.log (128885 bytes) INFO 2025-06-26 10:55:47,938 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/parosci.log (3110054 bytes) INFO 2025-06-26 10:55:48,206 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/tailCone.log (1455163 bytes) INFO 2025-06-26 10:55:48,401 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.243.00/biolume.log (1651724 bytes) INFO 2025-06-26 10:55:48,564 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:55:48,655 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.81 seconds WARNING 2025-06-26 10:55:48,655 process.py download_process():196 [1] No lopc.bin file for 2005.243.00 INFO 2025-06-26 10:55:48,655 process.py calibrate():227 [1] Calibration steps for 2005.243.00 INFO 2025-06-26 10:55:48,752 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:55:48,754 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:55:49,801 calibrate.py _nudge_pos():1806 [1] 126: 0.120 0.0000260 -0.0000321 4305 14.35 0.269 -0.414 2005-08-31T03:20:41.478707072 INFO 2025-06-26 10:55:50,409 calibrate.py _nudge_pos():1806 [1] 191: 0.120 -0.0002027 0.0000642 8050 26.83 -1.119 0.443 2005-08-31T03:48:35.484029952 INFO 2025-06-26 10:55:51,173 calibrate.py _nudge_pos():1806 [1] 271: 0.120 -0.0002198 0.0000122 8035 26.78 -1.216 0.084 2005-08-31T04:16:41.478531328 INFO 2025-06-26 10:55:51,942 calibrate.py _nudge_pos():1806 [1] 351: 0.120 -0.0002642 0.0000075 8035 26.78 -1.463 0.052 2005-08-31T04:44:47.483032192 INFO 2025-06-26 10:55:52,228 calibrate.py _nudge_pos():1862 [1] 360: - - - 0 0.00 - - INFO 2025-06-26 10:55:52,228 calibrate.py _nudge_pos():1868 [1] Points in final series = 30198 WARNING 2025-06-26 10:55:52,282 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:55:52,521 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:52,771 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:52,962 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:52,963 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.243.00/ctd1.nc INFO 2025-06-26 10:55:52,964 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:55:52,965 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:55:52,965 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:55:53,194 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:53,379 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:53,381 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.243.00/ctd2.nc INFO 2025-06-26 10:55:53,382 calibrate.py _range_qc_combined_nc():898 [1] Setting 375 ctd2_salinity values to NaN INFO 2025-06-26 10:55:53,382 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:55:53,382 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:55:53,396 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:55:53,666 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [26340] INFO 2025-06-26 10:55:53,722 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:55:53,727 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:55:53,728 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.00 ERROR 2025-06-26 10:55:53,728 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.243.00 INFO 2025-06-26 10:55:53,754 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_cal.nc INFO 2025-06-26 10:55:53,811 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:55:53,815 process.py align():251 [1] Alignment steps for 2005.243.00 INFO 2025-06-26 10:55:53,839 align.py process_cal():139 [1] Processing dorado_2005.243.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.243.00 INFO 2025-06-26 10:55:53,852 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:53,854 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:53,883 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:53,885 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:53,912 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:53,914 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:53,930 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:55:53,930 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:55:53,941 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:53,943 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:53,970 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:53,972 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:53,998 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:54,000 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,026 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:54,028 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,053 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,055 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,081 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,083 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,107 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,110 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,135 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,137 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,162 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,164 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,189 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,192 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,216 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,219 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,243 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,246 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,271 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,274 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,299 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,302 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,327 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,330 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,355 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,358 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,384 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,387 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,413 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,416 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,441 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,443 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,471 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,473 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,498 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.243.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:54,501 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:54,533 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:54,557 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:54,582 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:54,608 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:55:54,635 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:54,657 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_align.nc INFO 2025-06-26 10:55:54,711 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:55:54,713 process.py resample():273 [1] Resampling steps for 2005.243.00 INFO 2025-06-26 10:55:54,713 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:55:54,739 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_align.nc mission netCDF file INFO 2025-06-26 10:55:54,744 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_align.nc mission netCDF file INFO 2025-06-26 10:55:54,745 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-31T03:04:37.084772608 to 2005-08-31T04:45:16.481045760 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:55:54,746 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-31T03:04:19.685964544 to 2005-08-31T04:45:16.521043072 (0 days 00:00:00.049996416 before mission_end) INFO 2025-06-26 10:55:54,748 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-31T03:04:42.484402688 to 2005-08-31T04:45:16.571039488 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:55:54,749 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-31T03:04:42.534399232 to 2005-08-31T04:45:16.391051776 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 10:55:54,751 resample.py get_mission_start_end():1145 [1] isus : 2005-08-31T03:05:46.620009216 to 2005-08-31T04:45:15.461115648 (0 days 00:00:01.109923840 before mission_end) INFO 2025-06-26 10:55:54,752 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-31T03:04:14.906257920 to 2005-08-31T04:45:15.251095808 (0 days 00:00:01.319943680 before mission_end) INFO 2025-06-26 10:55:54,753 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-31T03:04:15.336262528 to 2005-08-31T04:45:16.531042304 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:55:54,754 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_align.nc mission netCDF file INFO 2025-06-26 10:55:54,754 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,844 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,862 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,880 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,897 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,913 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,929 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,944 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,959 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,973 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:54,987 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,000 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,016 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,031 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,045 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,059 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,073 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,088 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,104 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,120 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,135 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,151 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,166 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,176 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,186 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,195 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,206 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,222 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:55,350 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_1S.nc INFO 2025-06-26 10:55:56,079 create_products.py gulper_odv():401 [1] No gulper times found for 2005.243.00 INFO 2025-06-26 10:55:56,079 process.py archive():337 [1] Archiving steps for 2005.243.00 INFO 2025-06-26 10:55:56,079 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:55:56,079 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:55:56,081 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.00_1S.nc INFO 2025-06-26 10:55:56,091 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:56,092 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.00_cal.nc INFO 2025-06-26 10:55:56,120 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:56,121 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.243.00_align.nc INFO 2025-06-26 10:55:56,148 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:56,160 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,171 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,176 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,184 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,207 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,213 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,225 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,236 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,256 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005243/2005.243.00 done. INFO 2025-06-26 10:55:56,257 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:55:56,257 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.243.00/dorado_2005.243.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf