INFO 2025-06-26 10:55:07,821 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:55:07,821 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:55:07,821 process.py process_mission():449 [1] Processing LOCO mission 2005.242.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:55:07,821 process.py download_process():165 [1] Download and processing steps for 2005.242.01 INFO 2025-06-26 10:55:07,821 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005242/2005.242.01 INFO 2025-06-26 10:55:07,821 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005242/2005.242.01 to /data/auv_data/dorado/missionlogs/2005.242.01 INFO 2025-06-26 10:55:11,476 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.242.01 INFO 2025-06-26 10:55:11,476 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/ctdDriver.log (9114027 bytes) INFO 2025-06-26 10:55:12,154 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/ctdDriver2.log (9114021 bytes) INFO 2025-06-26 10:55:12,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/gps.log (70124 bytes) INFO 2025-06-26 10:55:12,833 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/hydroscatlog.log (6216554 bytes) INFO 2025-06-26 10:55:13,558 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/navigation.log (30559294 bytes) INFO 2025-06-26 10:55:15,731 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/isuslog.log (556149 bytes) INFO 2025-06-26 10:55:15,787 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/parosci.log (13301126 bytes) INFO 2025-06-26 10:55:16,867 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.242.01/parosci.log: [276668] INFO 2025-06-26 10:55:16,901 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/tailCone.log (6220363 bytes) INFO 2025-06-26 10:55:17,666 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.01/biolume.log (7053916 bytes) INFO 2025-06-26 10:55:18,327 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:55:18,686 logs2netcdfs.py download_process_logs():807 [1] Time to process: 7.21 seconds WARNING 2025-06-26 10:55:18,687 process.py download_process():196 [1] No lopc.bin file for 2005.242.01 INFO 2025-06-26 10:55:18,687 process.py calibrate():227 [1] Calibration steps for 2005.242.01 INFO 2025-06-26 10:55:18,905 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:55:18,906 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:55:19,630 calibrate.py _nudge_pos():1806 [1] 92: 0.080 -0.0003914 0.0000064 9385 31.28 -1.854 0.038 2005-08-30T13:25:24.580666240 INFO 2025-06-26 10:55:20,096 calibrate.py _nudge_pos():1806 [1] 140: 0.060 -0.0005324 -0.0000042 9755 32.51 -2.427 -0.024 2005-08-30T13:58:42.583793920 INFO 2025-06-26 10:55:20,680 calibrate.py _nudge_pos():1806 [1] 199: 0.090 -0.0004017 -0.0000382 9850 32.83 -1.814 -0.216 2005-08-30T14:32:30.574866816 INFO 2025-06-26 10:55:21,273 calibrate.py _nudge_pos():1806 [1] 260: 0.080 -0.0004563 -0.0001075 9750 32.50 -2.082 -0.613 2005-08-30T15:06:00.577172224 INFO 2025-06-26 10:55:21,806 calibrate.py _nudge_pos():1806 [1] 314: 0.080 -0.0005160 -0.0001393 9335 31.11 -2.460 -0.830 2005-08-30T15:38:00.575643264 INFO 2025-06-26 10:55:22,396 calibrate.py _nudge_pos():1806 [1] 372: 0.090 -0.0006583 -0.0016915 10575 35.25 -2.771 -8.893 2005-08-30T16:14:12.576851072 INFO 2025-06-26 10:55:22,995 calibrate.py _nudge_pos():1806 [1] 433: 0.090 -0.0017270 0.0000406 10500 35.00 -7.320 0.215 2005-08-30T16:50:12.578880768 INFO 2025-06-26 10:55:23,520 calibrate.py _nudge_pos():1806 [1] 486: 0.100 -0.0017169 0.0004341 10600 35.33 -7.207 2.277 2005-08-30T17:26:24.580088576 INFO 2025-06-26 10:55:24,050 calibrate.py _nudge_pos():1806 [1] 539: 0.090 -0.0015071 0.0005502 9580 31.93 -6.997 3.193 2005-08-30T17:59:12.575271552 INFO 2025-06-26 10:55:24,601 calibrate.py _nudge_pos():1806 [1] 593: 0.090 -0.0010862 0.0002474 6575 21.91 -7.347 2.092 2005-08-30T18:22:00.581556736 INFO 2025-06-26 10:55:25,259 calibrate.py _nudge_pos():1806 [1] 658: 0.110 -0.0019735 -0.0018907 8140 27.13 -10.780 -12.913 2005-08-30T18:50:12.575647360 INFO 2025-06-26 10:55:25,840 calibrate.py _nudge_pos():1806 [1] 715: 0.090 -0.0024817 -0.0020598 9380 31.26 -11.761 -12.209 2005-08-30T19:22:24.583295616 INFO 2025-06-26 10:55:26,375 calibrate.py _nudge_pos():1806 [1] 768: 0.100 -0.0026056 -0.0021037 9490 31.63 -12.202 -12.324 2005-08-30T19:54:54.579711616 INFO 2025-06-26 10:55:26,839 calibrate.py _nudge_pos():1806 [1] 814: 0.100 -0.0005547 -0.0003422 1935 6.45 -12.745 -9.837 2005-08-30T20:02:06.580117760 INFO 2025-06-26 10:55:28,379 calibrate.py _nudge_pos():1862 [1] 940: - - - 4 0.01 - - INFO 2025-06-26 10:55:28,379 calibrate.py _nudge_pos():1868 [1] Points in final series = 129479 WARNING 2025-06-26 10:55:32,866 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:55:33,830 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:34,836 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:35,626 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:35,629 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.242.01/ctd1.nc INFO 2025-06-26 10:55:35,630 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:55:35,631 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:55:35,631 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:55:36,572 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:37,359 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:55:37,362 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.242.01/ctd2.nc INFO 2025-06-26 10:55:37,363 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:55:37,363 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:55:37,363 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:55:37,402 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:55:38,661 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 160740 241500 241501 241502 596580 929880] INFO 2025-06-26 10:55:38,901 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:55:38,907 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:55:38,908 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.242.01 ERROR 2025-06-26 10:55:38,908 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.242.01 INFO 2025-06-26 10:55:39,009 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_cal.nc INFO 2025-06-26 10:55:39,117 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:55:39,121 process.py align():251 [1] Alignment steps for 2005.242.01 INFO 2025-06-26 10:55:39,152 align.py process_cal():139 [1] Processing dorado_2005.242.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.242.01 INFO 2025-06-26 10:55:39,189 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:39,194 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:39,291 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:39,297 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:39,387 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:39,393 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:39,453 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:55:39,454 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:55:39,490 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:39,496 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:39,588 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:39,594 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:39,676 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:39,681 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:39,762 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:39,766 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:39,846 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:39,852 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:39,934 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:39,939 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,027 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,033 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,113 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,118 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,200 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,205 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,285 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,291 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,373 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,378 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,460 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,465 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,545 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,550 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,631 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,636 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,717 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,722 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,803 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,808 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,888 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,893 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:40,993 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:40,999 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:41,081 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:41,087 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:41,168 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:41,173 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:41,253 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:41,258 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:41,361 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:41,432 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:41,504 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:41,577 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:55:41,654 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:41,731 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_align.nc INFO 2025-06-26 10:55:41,824 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:55:41,827 process.py resample():273 [1] Resampling steps for 2005.242.01 INFO 2025-06-26 10:55:41,827 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:55:41,854 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_align.nc mission netCDF file INFO 2025-06-26 10:55:41,860 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_align.nc mission netCDF file INFO 2025-06-26 10:55:41,862 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-30T12:52:58.593975552 to 2005-08-30T20:04:34.379992704 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:55:41,864 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-30T12:52:42.775059200 to 2005-08-30T20:04:34.379992704 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:55:41,866 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-30T12:53:05.093530368 to 2005-08-30T20:04:34.469986688 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:55:41,867 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-30T12:53:05.023535232 to 2005-08-30T20:04:34.419990016 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 10:55:41,869 resample.py get_mission_start_end():1145 [1] isus : 2005-08-30T12:54:07.519254016 to 2005-08-30T20:04:33.090081152 (0 days 00:00:01.379905536 before mission_end) INFO 2025-06-26 10:55:41,870 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-30T12:52:35.585517696 to 2005-08-30T20:04:33.879992704 (0 days 00:00:00.589993984 before mission_end) INFO 2025-06-26 10:55:41,872 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-30T12:52:36.995455232 to 2005-08-30T20:04:34.369993472 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:55:41,873 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_align.nc mission netCDF file INFO 2025-06-26 10:55:41,873 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,170 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,218 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,264 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,310 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,351 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,392 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,432 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,473 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,512 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,550 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,587 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,626 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,663 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,702 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,741 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,780 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,820 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,859 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,896 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,934 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:42,972 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,011 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,028 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,044 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,058 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,081 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,127 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:43,372 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_1S.nc INFO 2025-06-26 10:55:44,657 create_products.py gulper_odv():401 [1] No gulper times found for 2005.242.01 INFO 2025-06-26 10:55:44,657 process.py archive():337 [1] Archiving steps for 2005.242.01 INFO 2025-06-26 10:55:44,657 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:55:44,658 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:55:44,659 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.01_1S.nc INFO 2025-06-26 10:55:44,682 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:44,683 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.01_cal.nc INFO 2025-06-26 10:55:44,799 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:44,800 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.01_align.nc INFO 2025-06-26 10:55:44,913 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:44,943 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:44,974 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:44,979 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:44,999 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,095 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,103 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,143 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,170 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,247 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.01 done. INFO 2025-06-26 10:55:45,248 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:55:45,248 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.01/dorado_2005.242.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf