INFO 2025-06-26 10:54:31,041 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:54:31,041 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:54:31,041 process.py process_mission():449 [1] Processing LOCO mission 2005.242.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:54:31,041 process.py download_process():165 [1] Download and processing steps for 2005.242.00 INFO 2025-06-26 10:54:31,041 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005242/2005.242.00 INFO 2025-06-26 10:54:31,042 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005242/2005.242.00 to /data/auv_data/dorado/missionlogs/2005.242.00 INFO 2025-06-26 10:54:34,742 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.242.00 INFO 2025-06-26 10:54:34,742 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/ctdDriver.log (9261075 bytes) INFO 2025-06-26 10:54:35,415 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/ctdDriver2.log (9260981 bytes) INFO 2025-06-26 10:54:36,094 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/gps.log (61844 bytes) INFO 2025-06-26 10:54:36,108 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/hydroscatlog.log (6316874 bytes) INFO 2025-06-26 10:54:36,842 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/navigation.log (31051590 bytes) INFO 2025-06-26 10:54:39,031 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/isuslog.log (564917 bytes) INFO 2025-06-26 10:54:39,090 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/parosci.log (13515254 bytes) INFO 2025-06-26 10:54:40,201 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.242.00/parosci.log: [249588] INFO 2025-06-26 10:54:40,237 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/tailCone.log (6320347 bytes) INFO 2025-06-26 10:54:41,021 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.242.00/biolume.log (7166796 bytes) INFO 2025-06-26 10:54:41,703 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:54:42,066 logs2netcdfs.py download_process_logs():807 [1] Time to process: 7.32 seconds WARNING 2025-06-26 10:54:42,067 process.py download_process():196 [1] No lopc.bin file for 2005.242.00 INFO 2025-06-26 10:54:42,067 process.py calibrate():227 [1] Calibration steps for 2005.242.00 INFO 2025-06-26 10:54:42,280 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:54:42,281 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:54:43,012 calibrate.py _nudge_pos():1806 [1] 92: 0.100 -0.0002725 0.0000596 10235 34.11 -1.183 0.324 2005-08-30T06:03:42.526181504 INFO 2025-06-26 10:54:43,608 calibrate.py _nudge_pos():1806 [1] 153: 0.100 -0.0003772 0.0000520 9660 32.20 -1.736 0.299 2005-08-30T06:36:54.529719808 INFO 2025-06-26 10:54:44,223 calibrate.py _nudge_pos():1806 [1] 215: 0.100 -0.0004246 -0.0000113 10255 34.18 -1.842 -0.062 2005-08-30T07:12:06.525038208 INFO 2025-06-26 10:54:44,675 calibrate.py _nudge_pos():1806 [1] 261: 0.100 -0.0002553 -0.0000972 9800 32.66 -1.159 -0.551 2005-08-30T07:45:31.527686144 INFO 2025-06-26 10:54:45,174 calibrate.py _nudge_pos():1806 [1] 311: 0.110 -0.0003425 -0.0001513 9470 31.56 -1.610 -0.888 2005-08-30T08:17:54.524581888 INFO 2025-06-26 10:54:45,699 calibrate.py _nudge_pos():1806 [1] 364: 0.110 0.0001993 -0.0009201 10720 35.73 0.828 -4.772 2005-08-30T08:54:30.524145664 INFO 2025-06-26 10:54:46,212 calibrate.py _nudge_pos():1806 [1] 416: 0.100 -0.0011687 0.0005492 10185 33.95 -5.107 2.998 2005-08-30T09:29:18.531107200 INFO 2025-06-26 10:54:46,844 calibrate.py _nudge_pos():1806 [1] 476: 0.120 -0.0016808 0.0004860 9755 32.51 -7.666 2.770 2005-08-30T10:02:48.523413376 INFO 2025-06-26 10:54:47,537 calibrate.py _nudge_pos():1806 [1] 545: 0.120 -0.0015193 0.0004497 9230 30.76 -7.322 2.709 2005-08-30T10:34:42.522295424 INFO 2025-06-26 10:54:48,100 calibrate.py _nudge_pos():1806 [1] 598: 0.120 -0.0011405 0.0002862 6520 21.73 -7.779 2.441 2005-08-30T10:57:18.529402496 INFO 2025-06-26 10:54:48,653 calibrate.py _nudge_pos():1806 [1] 652: 0.120 -0.0019294 -0.0018383 8105 27.01 -10.585 -12.610 2005-08-30T11:25:12.524726144 INFO 2025-06-26 10:54:49,272 calibrate.py _nudge_pos():1806 [1] 711: 0.120 -0.0024816 -0.0020278 9130 30.43 -12.083 -12.348 2005-08-30T11:56:36.525663104 INFO 2025-06-26 10:54:49,802 calibrate.py _nudge_pos():1806 [1] 764: 0.120 -0.0025636 -0.0020180 9280 30.93 -12.277 -12.089 2005-08-30T12:28:24.524956288 INFO 2025-06-26 10:54:50,334 calibrate.py _nudge_pos():1806 [1] 817: 0.120 -0.0015028 -0.0010731 5170 17.23 -12.917 -11.540 2005-08-30T12:46:30.530559744 INFO 2025-06-26 10:54:50,632 calibrate.py _nudge_pos():1862 [1] 825: - - - 3 0.01 - - INFO 2025-06-26 10:54:50,632 calibrate.py _nudge_pos():1868 [1] Points in final series = 131566 WARNING 2025-06-26 10:54:55,175 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:54:56,145 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:54:57,152 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:54:57,952 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:54:57,954 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.242.00/ctd1.nc INFO 2025-06-26 10:54:57,956 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:54:57,956 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:54:57,956 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:54:58,921 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:54:59,716 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:54:59,718 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.242.00/ctd2.nc INFO 2025-06-26 10:54:59,720 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:54:59,720 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:54:59,720 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:54:59,760 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:55:01,041 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 47100 50400 157740 271920 318000 516120 1400820 1400821 1400822 1400823 1400824 1400825 1400826 1400827 1400828 1515600] INFO 2025-06-26 10:55:01,286 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:55:01,292 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:55:01,293 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.242.00 ERROR 2025-06-26 10:55:01,293 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.242.00 INFO 2025-06-26 10:55:01,396 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_cal.nc INFO 2025-06-26 10:55:01,507 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:55:01,512 process.py align():251 [1] Alignment steps for 2005.242.00 INFO 2025-06-26 10:55:01,544 align.py process_cal():139 [1] Processing dorado_2005.242.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.242.00 INFO 2025-06-26 10:55:01,583 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:01,587 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:01,688 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:01,694 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:01,790 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:01,796 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:01,858 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:55:01,858 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:55:01,912 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:55:01,918 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:02,009 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:02,015 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,102 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:02,108 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,191 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:55:02,196 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,281 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,286 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,371 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,376 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,460 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,466 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,554 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,636 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,642 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,725 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,732 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,814 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,820 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:02,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:02,921 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,003 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,009 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,093 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,098 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,182 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,188 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,271 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,276 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,359 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,365 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,447 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,453 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,534 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,540 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,621 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,627 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,709 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.242.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:55:03,714 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:55:03,820 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:03,892 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:03,965 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:55:04,041 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:55:04,139 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:55:04,234 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_align.nc INFO 2025-06-26 10:55:04,324 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:55:04,327 process.py resample():273 [1] Resampling steps for 2005.242.00 INFO 2025-06-26 10:55:04,328 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:55:04,355 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_align.nc mission netCDF file INFO 2025-06-26 10:55:04,361 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_align.nc mission netCDF file INFO 2025-06-26 10:55:04,363 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-30T05:28:27.171093248 to 2005-08-30T12:47:00.128532224 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:55:04,365 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-30T05:28:10.482236416 to 2005-08-30T12:47:00.098534144 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:55:04,366 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-30T05:28:32.960696704 to 2005-08-30T12:47:00.078535552 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 10:55:04,368 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-30T05:28:33.200680192 to 2005-08-30T12:47:00.088534784 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 10:55:04,370 resample.py get_mission_start_end():1145 [1] isus : 2005-08-30T05:29:35.486413184 to 2005-08-30T12:46:58.738627456 (0 days 00:00:01.389904768 before mission_end) INFO 2025-06-26 10:55:04,371 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-30T05:28:04.552608512 to 2005-08-30T12:46:58.748592384 (0 days 00:00:01.379939840 before mission_end) INFO 2025-06-26 10:55:04,373 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-30T05:28:05.032609664 to 2005-08-30T12:47:00.008540416 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:55:04,374 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_align.nc mission netCDF file INFO 2025-06-26 10:55:04,374 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,662 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,710 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,756 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,803 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,846 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,889 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,930 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:04,970 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,009 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,047 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,086 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,123 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,160 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,198 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,237 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,274 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,314 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,355 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,394 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,432 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,471 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,512 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,530 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,547 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,563 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,582 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,628 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:55:05,873 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_1S.nc INFO 2025-06-26 10:55:07,192 create_products.py gulper_odv():401 [1] No gulper times found for 2005.242.00 INFO 2025-06-26 10:55:07,193 process.py archive():337 [1] Archiving steps for 2005.242.00 INFO 2025-06-26 10:55:07,193 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:55:07,193 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:55:07,194 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.00_1S.nc INFO 2025-06-26 10:55:07,217 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:07,218 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.00_cal.nc INFO 2025-06-26 10:55:07,335 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:07,336 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.242.00_align.nc INFO 2025-06-26 10:55:07,445 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:55:07,474 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,501 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,506 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,528 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,634 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,698 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,778 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005242/2005.242.00 done. INFO 2025-06-26 10:55:07,778 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:55:07,778 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.242.00/dorado_2005.242.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf