INFO 2025-06-26 10:53:24,027 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:53:24,027 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:53:24,027 process.py process_mission():449 [1] Processing LOCO mission 2005.241.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:53:24,027 process.py download_process():165 [1] Download and processing steps for 2005.241.03 INFO 2025-06-26 10:53:24,027 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005241/2005.241.03 INFO 2025-06-26 10:53:24,027 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005241/2005.241.03 to /data/auv_data/dorado/missionlogs/2005.241.03 INFO 2025-06-26 10:53:27,034 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.241.03 INFO 2025-06-26 10:53:27,035 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/ctdDriver.log (8003203 bytes) INFO 2025-06-26 10:53:27,618 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/ctdDriver2.log (8003109 bytes) INFO 2025-06-26 10:53:28,250 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/gps.log (97700 bytes) INFO 2025-06-26 10:53:28,268 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/hydroscatlog.log (5459894 bytes) INFO 2025-06-26 10:53:28,907 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/navigation.log (26836158 bytes) INFO 2025-06-26 10:53:30,841 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/isuslog.log (488181 bytes) INFO 2025-06-26 10:53:30,891 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/parosci.log (11681558 bytes) INFO 2025-06-26 10:53:31,866 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/tailCone.log (5463259 bytes) INFO 2025-06-26 10:53:32,560 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.241.03/biolume.log (6194940 bytes) INFO 2025-06-26 10:53:33,151 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:53:33,466 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.43 seconds WARNING 2025-06-26 10:53:33,467 process.py download_process():196 [1] No lopc.bin file for 2005.241.03 INFO 2025-06-26 10:53:33,467 process.py calibrate():227 [1] Calibration steps for 2005.241.03 INFO 2025-06-26 10:53:33,666 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:53:33,668 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:53:34,389 calibrate.py _nudge_pos():1806 [1] 92: 0.140 -0.0001412 0.0000846 7840 26.13 -0.800 0.600 2005-08-29T10:06:42.196117632 INFO 2025-06-26 10:53:35,260 calibrate.py _nudge_pos():1806 [1] 181: 0.150 -0.0001743 0.0000447 8140 27.13 -0.952 0.305 2005-08-29T10:35:18.188564096 INFO 2025-06-26 10:53:36,199 calibrate.py _nudge_pos():1806 [1] 278: 0.150 -0.0001273 0.0000250 8130 27.10 -0.697 0.171 2005-08-29T11:04:00.190598912 INFO 2025-06-26 10:53:37,024 calibrate.py _nudge_pos():1806 [1] 364: 0.150 -0.0002689 0.0000505 8365 27.88 -1.430 0.336 2005-08-29T11:33:18.190167680 INFO 2025-06-26 10:53:37,853 calibrate.py _nudge_pos():1806 [1] 451: 0.140 -0.0001523 0.0000125 7850 26.16 -0.864 0.089 2005-08-29T12:00:54.196723456 INFO 2025-06-26 10:53:38,693 calibrate.py _nudge_pos():1806 [1] 540: 0.150 0.0001441 -0.0009194 9580 31.93 0.670 -5.335 2005-08-29T12:34:18.189440512 INFO 2025-06-26 10:53:39,580 calibrate.py _nudge_pos():1806 [1] 629: 0.150 -0.0011216 0.0003320 8320 27.73 -6.000 2.218 2005-08-29T13:03:30.189420160 INFO 2025-06-26 10:53:40,422 calibrate.py _nudge_pos():1806 [1] 712: 0.160 -0.0016293 0.0004073 8170 27.23 -8.873 2.772 2005-08-29T13:32:06.191866112 INFO 2025-06-26 10:53:41,262 calibrate.py _nudge_pos():1806 [1] 795: 0.170 -0.0013230 0.0004692 7840 26.13 -7.506 3.327 2005-08-29T13:59:36.188833536 INFO 2025-06-26 10:53:42,121 calibrate.py _nudge_pos():1806 [1] 881: 0.150 -0.0011110 0.0002372 5695 18.98 -8.676 2.316 2005-08-29T14:20:00.194983424 INFO 2025-06-26 10:53:43,203 calibrate.py _nudge_pos():1806 [1] 988: 0.160 -0.0017772 -0.0016756 6880 22.93 -11.486 -13.541 2005-08-29T14:44:42.193459456 INFO 2025-06-26 10:53:44,062 calibrate.py _nudge_pos():1806 [1] 1075: 0.150 -0.0022009 -0.0018297 7910 26.36 -12.369 -12.861 2005-08-29T15:12:30.189193984 INFO 2025-06-26 10:53:44,970 calibrate.py _nudge_pos():1806 [1] 1167: 0.160 -0.0022366 -0.0019158 7975 26.58 -12.464 -13.356 2005-08-29T15:40:36.193694848 INFO 2025-06-26 10:53:45,771 calibrate.py _nudge_pos():1806 [1] 1247: 0.160 -0.0014105 -0.0009244 4465 14.88 -14.039 -11.511 2005-08-29T15:56:48.197107968 INFO 2025-06-26 10:53:46,757 calibrate.py _nudge_pos():1862 [1] 1324: - - - 2 0.00 - - INFO 2025-06-26 10:53:46,758 calibrate.py _nudge_pos():1868 [1] Points in final series = 113703 WARNING 2025-06-26 10:53:46,947 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:53:47,798 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:48,661 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:53:49,377 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:53:49,379 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.241.03/ctd1.nc INFO 2025-06-26 10:53:49,381 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 10:53:49,381 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:53:49,381 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:53:50,203 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:50,892 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:53:50,894 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.241.03/ctd2.nc INFO 2025-06-26 10:53:50,896 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:53:50,896 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:53:50,896 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:53:51,003 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:53:52,048 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 63 101340 137220 139320 218220 703980] INFO 2025-06-26 10:53:52,259 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:53:52,264 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:53:52,265 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.241.03 ERROR 2025-06-26 10:53:52,265 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.241.03 INFO 2025-06-26 10:53:52,358 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_cal.nc INFO 2025-06-26 10:53:52,457 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:53:52,462 process.py align():251 [1] Alignment steps for 2005.241.03 INFO 2025-06-26 10:53:52,491 align.py process_cal():139 [1] Processing dorado_2005.241.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.241.03 INFO 2025-06-26 10:53:52,524 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:52,528 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:52,611 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:52,616 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:52,695 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:52,700 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:52,749 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:53:52,749 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:53:52,781 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:53:52,785 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:52,864 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:52,869 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:52,953 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:52,958 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,028 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:53:53,032 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,102 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,107 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,179 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,183 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,253 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,258 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,328 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,333 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,402 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,406 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,476 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,481 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,550 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,554 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,624 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,629 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,698 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,703 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,773 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,777 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,846 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,850 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,920 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:53,925 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:53,996 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:54,001 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:54,073 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:54,078 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:54,147 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:54,151 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:54,221 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:54,225 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:54,296 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.241.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:53:54,301 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:53:54,393 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:54,454 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:54,515 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:53:54,577 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:53:54,643 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:53:54,698 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_align.nc INFO 2025-06-26 10:53:54,785 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:53:54,788 process.py resample():273 [1] Resampling steps for 2005.241.03 INFO 2025-06-26 10:53:54,788 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:53:54,815 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_align.nc mission netCDF file INFO 2025-06-26 10:53:54,821 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_align.nc mission netCDF file INFO 2025-06-26 10:53:54,822 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-29T09:39:25.038270720 to 2005-08-29T15:58:25.590435968 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 10:53:54,824 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-29T09:39:08.969371264 to 2005-08-29T15:58:25.580436736 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:53:54,826 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-29T09:39:31.927798784 to 2005-08-29T15:58:25.640432640 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:53:54,827 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-29T09:39:32.027791744 to 2005-08-29T15:58:25.540439552 (0 days 00:00:00.099993088 before mission_end) INFO 2025-06-26 10:53:54,829 resample.py get_mission_start_end():1145 [1] isus : 2005-08-29T09:40:32.623640832 to 2005-08-29T15:58:24.150534656 (0 days 00:00:01.489897984 before mission_end) INFO 2025-06-26 10:53:54,830 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-29T09:39:03.199732352 to 2005-08-29T15:58:24.720461312 (0 days 00:00:00.919971328 before mission_end) INFO 2025-06-26 10:53:54,832 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-29T09:39:03.369755008 to 2005-08-29T15:58:25.600435456 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:53:54,832 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_align.nc mission netCDF file INFO 2025-06-26 10:53:54,833 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,084 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,127 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,169 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,210 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,247 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,285 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,321 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,357 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,390 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,423 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,456 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,488 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,521 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,554 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,586 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,619 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,654 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,688 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,725 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,759 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,795 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,829 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,846 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,861 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,874 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,890 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:55,929 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:53:56,155 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_1S.nc INFO 2025-06-26 10:53:57,411 create_products.py gulper_odv():401 [1] No gulper times found for 2005.241.03 INFO 2025-06-26 10:53:57,411 process.py archive():337 [1] Archiving steps for 2005.241.03 INFO 2025-06-26 10:53:57,411 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03, BASE_PATH = /data/auv_data INFO 2025-06-26 10:53:57,411 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:53:57,413 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.03_1S.nc INFO 2025-06-26 10:53:57,434 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:57,434 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.03_cal.nc INFO 2025-06-26 10:53:57,534 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:57,535 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.241.03_align.nc INFO 2025-06-26 10:53:57,633 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:53:57,661 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,687 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,692 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,711 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,790 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,832 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,854 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,917 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005241/2005.241.03 done. INFO 2025-06-26 10:53:57,917 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:53:57,917 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.241.03/dorado_2005.241.03_processing.log /Volumes/AUVCTD/surveys/2005/netcdf