INFO 2025-06-26 10:51:20,812 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:51:20,812 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:51:20,815 process.py process_mission():449 [1] Processing LOCO mission 2005.240.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:51:20,815 process.py download_process():165 [1] Download and processing steps for 2005.240.01 INFO 2025-06-26 10:51:20,815 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005240/2005.240.01 INFO 2025-06-26 10:51:20,817 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005240/2005.240.01 to /data/auv_data/dorado/missionlogs/2005.240.01 INFO 2025-06-26 10:51:23,835 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.240.01 INFO 2025-06-26 10:51:23,836 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/ctdDriver.log (8023091 bytes) INFO 2025-06-26 10:51:24,409 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/ctdDriver2.log (8022997 bytes) INFO 2025-06-26 10:51:25,003 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/gps.log (95756 bytes) INFO 2025-06-26 10:51:25,022 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/hydroscatlog.log (5473214 bytes) INFO 2025-06-26 10:51:25,678 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/navigation.log (26902002 bytes) INFO 2025-06-26 10:51:27,578 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/isuslog.log (490613 bytes) INFO 2025-06-26 10:51:27,629 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/parosci.log (11710166 bytes) INFO 2025-06-26 10:51:28,612 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/tailCone.log (5476363 bytes) INFO 2025-06-26 10:51:29,291 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.240.01/biolume.log (6210172 bytes) INFO 2025-06-26 10:51:29,906 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:51:30,225 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.39 seconds WARNING 2025-06-26 10:51:30,226 process.py download_process():196 [1] No lopc.bin file for 2005.240.01 INFO 2025-06-26 10:51:30,226 process.py calibrate():227 [1] Calibration steps for 2005.240.01 INFO 2025-06-26 10:51:30,422 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:51:30,424 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:51:31,137 calibrate.py _nudge_pos():1806 [1] 91: 0.090 -0.0002473 0.0000823 8365 27.88 -1.314 0.547 2005-08-28T08:38:06.165431296 INFO 2025-06-26 10:51:32,042 calibrate.py _nudge_pos():1806 [1] 186: 0.080 -0.0002790 0.0000691 7930 26.43 -1.564 0.485 2005-08-28T09:06:06.170343168 INFO 2025-06-26 10:51:32,964 calibrate.py _nudge_pos():1806 [1] 282: 0.080 -0.0002299 0.0000576 8045 26.81 -1.271 0.398 2005-08-28T09:34:30.173610880 INFO 2025-06-26 10:51:33,780 calibrate.py _nudge_pos():1806 [1] 368: 0.080 -0.0002716 -0.0000101 8275 27.58 -1.460 -0.068 2005-08-28T10:03:30.174412672 INFO 2025-06-26 10:51:34,653 calibrate.py _nudge_pos():1806 [1] 460: 0.080 -0.0002146 -0.0000491 8065 26.88 -1.184 -0.338 2005-08-28T10:31:54.167681280 INFO 2025-06-26 10:51:35,539 calibrate.py _nudge_pos():1806 [1] 553: 0.090 -0.0006512 -0.0005231 9530 31.76 -3.042 -3.052 2005-08-28T11:05:12.170808576 INFO 2025-06-26 10:51:36,401 calibrate.py _nudge_pos():1806 [1] 643: 0.090 -0.0015550 0.0005087 8555 28.51 -8.090 3.306 2005-08-28T11:35:12.167500288 INFO 2025-06-26 10:51:37,252 calibrate.py _nudge_pos():1806 [1] 732: 0.100 -0.0014273 0.0003696 8200 27.33 -7.744 2.506 2005-08-28T12:04:00.169124096 INFO 2025-06-26 10:51:38,095 calibrate.py _nudge_pos():1806 [1] 820: 0.100 -0.0014087 0.0003691 7845 26.15 -7.987 2.616 2005-08-28T12:31:36.165680640 INFO 2025-06-26 10:51:38,934 calibrate.py _nudge_pos():1806 [1] 907: 0.090 -0.0009498 0.0002001 5510 18.36 -7.666 2.019 2005-08-28T12:51:24.174296320 INFO 2025-06-26 10:51:39,829 calibrate.py _nudge_pos():1806 [1] 998: 0.090 -0.0018079 -0.0018179 6870 22.90 -11.701 -14.712 2005-08-28T13:15:48.174005504 INFO 2025-06-26 10:51:40,751 calibrate.py _nudge_pos():1806 [1] 1090: 0.090 -0.0023115 -0.0019649 7765 25.88 -13.233 -14.069 2005-08-28T13:43:12.171384064 INFO 2025-06-26 10:51:41,675 calibrate.py _nudge_pos():1806 [1] 1183: 0.100 -0.0023802 -0.0019980 8095 26.98 -13.068 -13.723 2005-08-28T14:11:43.174172416 INFO 2025-06-26 10:51:42,516 calibrate.py _nudge_pos():1806 [1] 1269: 0.100 -0.0014456 -0.0010072 4525 15.08 -14.198 -12.376 2005-08-28T14:28:13.166353280 INFO 2025-06-26 10:51:42,997 calibrate.py _nudge_pos():1862 [1] 1296: - - - 2 0.00 - - INFO 2025-06-26 10:51:42,998 calibrate.py _nudge_pos():1868 [1] Points in final series = 113982 WARNING 2025-06-26 10:51:43,184 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:51:44,028 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:51:44,896 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:51:45,589 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:51:45,591 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.240.01/ctd1.nc INFO 2025-06-26 10:51:45,593 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:51:45,593 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:51:45,593 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:51:46,449 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:51:47,135 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:51:47,137 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.240.01/ctd2.nc INFO 2025-06-26 10:51:47,139 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:51:47,139 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:51:47,139 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:51:47,245 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:51:48,285 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [208500 208501 208502 418380 418381 418382 418383 537360 640680 746160 746161 868500] INFO 2025-06-26 10:51:48,515 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:51:48,521 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:51:48,522 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.240.01 ERROR 2025-06-26 10:51:48,522 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.240.01 INFO 2025-06-26 10:51:48,612 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_cal.nc INFO 2025-06-26 10:51:48,715 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:51:48,721 process.py align():251 [1] Alignment steps for 2005.240.01 INFO 2025-06-26 10:51:48,751 align.py process_cal():139 [1] Processing dorado_2005.240.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.240.01 INFO 2025-06-26 10:51:48,785 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:51:48,789 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:51:48,876 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:51:48,883 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:51:48,975 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:51:48,981 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:51:49,035 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:51:49,035 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:51:49,068 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:51:49,074 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:51:49,154 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:51:49,159 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,230 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:51:49,235 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,306 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:51:49,311 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,381 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,385 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,456 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,461 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,535 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,540 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,611 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,616 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,695 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,700 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,770 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,775 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,843 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,849 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,922 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:49,926 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:49,996 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,001 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,081 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,086 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,169 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,174 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,251 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,255 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,328 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,334 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,411 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,417 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,493 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,498 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,568 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,573 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,643 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.240.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:51:50,648 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:51:50,737 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:51:50,797 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:51:50,858 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:51:50,923 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:51:50,992 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:51:51,053 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_align.nc INFO 2025-06-26 10:51:51,139 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:51:51,141 process.py resample():273 [1] Resampling steps for 2005.240.01 INFO 2025-06-26 10:51:51,142 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:51:51,168 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_align.nc mission netCDF file INFO 2025-06-26 10:51:51,174 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_align.nc mission netCDF file INFO 2025-06-26 10:51:51,175 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-28T08:09:05.184696704 to 2005-08-28T14:29:01.573037184 (0 days 00:00:00.179987584 before mission_end) INFO 2025-06-26 10:51:51,177 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-28T08:08:49.325783040 to 2005-08-28T14:29:01.683029632 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:51:51,179 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-28T08:09:11.544260992 to 2005-08-28T14:29:01.753024768 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:51:51,181 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-28T08:09:11.694250880 to 2005-08-28T14:29:01.683029632 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:51:51,182 resample.py get_mission_start_end():1145 [1] isus : 2005-08-28T08:10:11.590147456 to 2005-08-28T14:29:01.123067904 (0 days 00:00:00.629956864 before mission_end) INFO 2025-06-26 10:51:51,183 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-28T08:08:43.006181760 to 2005-08-28T14:29:00.573071232 (0 days 00:00:01.179953536 before mission_end) INFO 2025-06-26 10:51:51,185 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-28T08:08:43.496182400 to 2005-08-28T14:29:01.723026816 (0 days 00:00:00.029997952 before mission_end) INFO 2025-06-26 10:51:51,186 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_align.nc mission netCDF file INFO 2025-06-26 10:51:51,186 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,439 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,482 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,524 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,565 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,602 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,639 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,676 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,711 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,746 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,780 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,813 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,847 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,880 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,914 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,948 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:51,982 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,019 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,055 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,090 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,124 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,158 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,192 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,208 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,224 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,238 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,255 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,296 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:51:52,521 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_1S.nc INFO 2025-06-26 10:51:53,874 create_products.py gulper_odv():401 [1] No gulper times found for 2005.240.01 INFO 2025-06-26 10:51:53,874 process.py archive():337 [1] Archiving steps for 2005.240.01 INFO 2025-06-26 10:51:53,874 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:51:53,875 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:51:53,876 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.240.01_1S.nc INFO 2025-06-26 10:51:53,896 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:51:53,897 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.240.01_cal.nc INFO 2025-06-26 10:51:53,993 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:51:53,994 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.240.01_align.nc INFO 2025-06-26 10:51:54,089 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:51:54,114 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,139 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,145 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,164 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,244 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,251 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,285 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,308 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,375 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005240/2005.240.01 done. INFO 2025-06-26 10:51:54,376 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:51:54,376 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.240.01/dorado_2005.240.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf