INFO 2025-06-26 10:50:06,941 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:50:06,942 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:50:06,942 process.py process_mission():449 [1] Processing LOCO mission 2005.239.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:50:06,942 process.py download_process():165 [1] Download and processing steps for 2005.239.02 INFO 2025-06-26 10:50:06,942 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005239/2005.239.02 INFO 2025-06-26 10:50:06,942 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005239/2005.239.02 to /data/auv_data/dorado/missionlogs/2005.239.02 INFO 2025-06-26 10:50:07,183 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.239.02 INFO 2025-06-26 10:50:07,183 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/ctdDriver.log (8206747 bytes) INFO 2025-06-26 10:50:07,778 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/ctdDriver2.log (8206653 bytes) INFO 2025-06-26 10:50:08,385 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/gps.log (104540 bytes) INFO 2025-06-26 10:50:08,405 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/hydroscatlog.log (5598374 bytes) INFO 2025-06-26 10:50:09,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/navigation.log (27518434 bytes) INFO 2025-06-26 10:50:10,987 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/isuslog.log (500117 bytes) INFO 2025-06-26 10:50:11,040 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/parosci.log (11977718 bytes) INFO 2025-06-26 10:50:12,030 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/tailCone.log (5601499 bytes) INFO 2025-06-26 10:50:12,711 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.02/biolume.log (6352156 bytes) INFO 2025-06-26 10:50:13,344 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:50:13,669 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.49 seconds WARNING 2025-06-26 10:50:13,670 process.py download_process():196 [1] No lopc.bin file for 2005.239.02 INFO 2025-06-26 10:50:13,670 process.py calibrate():227 [1] Calibration steps for 2005.239.02 INFO 2025-06-26 10:50:13,876 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:50:13,878 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:50:14,929 calibrate.py _nudge_pos():1806 [1] 123: 0.030 -0.0000051 0.0000033 25 0.08 -9.525 7.725 2005-08-27T08:25:52.139287936 INFO 2025-06-26 10:50:15,121 calibrate.py _nudge_pos():1806 [1] 143: 0.030 -0.0000155 0.0000096 1030 3.43 -0.668 0.520 2005-08-27T08:29:37.143873920 INFO 2025-06-26 10:50:15,767 calibrate.py _nudge_pos():1806 [1] 211: 0.030 -0.0001739 0.0000808 8035 26.78 -0.962 0.559 2005-08-27T08:57:31.139197568 INFO 2025-06-26 10:50:16,609 calibrate.py _nudge_pos():1806 [1] 298: 0.040 -0.0002021 0.0000751 8300 27.66 -1.083 0.503 2005-08-27T09:26:37.139588352 INFO 2025-06-26 10:50:17,394 calibrate.py _nudge_pos():1806 [1] 380: 0.050 -0.0001649 0.0000554 8565 28.55 -0.856 0.360 2005-08-27T09:56:31.136691072 INFO 2025-06-26 10:50:18,305 calibrate.py _nudge_pos():1806 [1] 474: 0.050 -0.0002284 0.0000415 8265 27.55 -1.229 0.279 2005-08-27T10:25:37.137081856 INFO 2025-06-26 10:50:19,161 calibrate.py _nudge_pos():1806 [1] 562: 0.040 -0.0002219 -0.0000057 8535 28.45 -1.157 -0.037 2005-08-27T10:55:31.144183936 INFO 2025-06-26 10:50:19,997 calibrate.py _nudge_pos():1806 [1] 648: 0.050 -0.0008153 -0.0005348 9565 31.88 -3.795 -3.108 2005-08-27T11:28:49.137311872 INFO 2025-06-26 10:50:20,836 calibrate.py _nudge_pos():1806 [1] 734: 0.050 -0.0014582 0.0006918 8215 27.38 -7.900 4.682 2005-08-27T11:57:37.138935808 INFO 2025-06-26 10:50:21,707 calibrate.py _nudge_pos():1806 [1] 824: 0.050 -0.0013903 0.0003655 8165 27.21 -7.576 2.488 2005-08-27T12:26:19.140970752 INFO 2025-06-26 10:50:22,574 calibrate.py _nudge_pos():1806 [1] 912: 0.060 -0.0015116 0.0004024 7605 25.35 -8.841 2.942 2005-08-27T12:53:07.140814976 INFO 2025-06-26 10:50:23,489 calibrate.py _nudge_pos():1806 [1] 1002: 0.060 -0.0010060 0.0002460 5795 19.31 -7.720 2.360 2005-08-27T13:13:55.145320832 INFO 2025-06-26 10:50:24,445 calibrate.py _nudge_pos():1806 [1] 1100: 0.050 -0.0017993 -0.0017594 6955 23.18 -11.503 -14.065 2005-08-27T13:38:43.143386112 INFO 2025-06-26 10:50:25,303 calibrate.py _nudge_pos():1806 [1] 1188: 0.050 -0.0022177 -0.0018916 7815 26.05 -12.614 -13.457 2005-08-27T14:06:13.140353408 INFO 2025-06-26 10:50:26,299 calibrate.py _nudge_pos():1806 [1] 1290: 0.060 -0.0022020 -0.0019292 8015 26.71 -12.210 -13.382 2005-08-27T14:34:37.143621248 INFO 2025-06-26 10:50:27,209 calibrate.py _nudge_pos():1806 [1] 1383: 0.060 -0.0013960 -0.0010117 4700 15.66 -13.200 -11.968 2005-08-27T14:51:49.142924544 INFO 2025-06-26 10:50:27,763 calibrate.py _nudge_pos():1862 [1] 1419: - - - 3 0.01 - - INFO 2025-06-26 10:50:27,764 calibrate.py _nudge_pos():1868 [1] Points in final series = 116595 WARNING 2025-06-26 10:50:28,018 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:50:28,891 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:50:29,772 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:30,465 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:30,468 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.239.02/ctd1.nc INFO 2025-06-26 10:50:30,469 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:50:30,469 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:50:30,470 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:50:31,322 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:32,019 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:32,021 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.239.02/ctd2.nc INFO 2025-06-26 10:50:32,023 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 10:50:32,023 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:50:32,023 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:50:32,060 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:50:33,118 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 78240 185700 331080 336060 336061 336062 338040 338041 667620 668280 1050960 1050961 1050962 1050963 1050964 1050965 1050966 1050967 1050968 1050969 1050970 1050971 1050972 1050973 1050974 1050975 1050976 1050977 1050978 1050979 1050980 1050981 1050982 1050983 1050984 1050985 1050986 1050987 1050988 1050989] INFO 2025-06-26 10:50:33,333 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:50:33,338 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:50:33,339 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.239.02 ERROR 2025-06-26 10:50:33,339 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.239.02 INFO 2025-06-26 10:50:33,442 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_cal.nc INFO 2025-06-26 10:50:33,543 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:50:33,548 process.py align():251 [1] Alignment steps for 2005.239.02 INFO 2025-06-26 10:50:33,576 align.py process_cal():139 [1] Processing dorado_2005.239.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.239.02 INFO 2025-06-26 10:50:33,611 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:33,614 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:33,711 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:33,719 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:33,803 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:33,809 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:33,858 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:50:33,858 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:50:33,891 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:33,896 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:33,977 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:33,981 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,055 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:34,060 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,130 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:34,135 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,207 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,212 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,283 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,287 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,359 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,364 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,435 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,440 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,524 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,529 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,599 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,604 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,676 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,681 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,753 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,757 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,828 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,832 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,903 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,907 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:34,978 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:34,982 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,058 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,063 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,134 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,139 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,212 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,216 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,289 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,293 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,365 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,370 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,440 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:35,445 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:35,537 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:35,599 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:35,661 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:35,726 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:50:35,795 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:35,850 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_align.nc INFO 2025-06-26 10:50:35,934 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:50:35,936 process.py resample():273 [1] Resampling steps for 2005.239.02 INFO 2025-06-26 10:50:35,937 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:50:35,963 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_align.nc mission netCDF file INFO 2025-06-26 10:50:35,968 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_align.nc mission netCDF file INFO 2025-06-26 10:50:35,970 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-27T08:24:06.986491392 to 2005-08-27T14:52:45.739047296 (0 days 00:00:00.009999488 before mission_end) INFO 2025-06-26 10:50:35,972 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-27T08:23:51.417558016 to 2005-08-27T14:52:45.749046784 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:50:35,973 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-27T08:24:13.576040064 to 2005-08-27T14:52:45.519062528 (0 days 00:00:00.229984256 before mission_end) INFO 2025-06-26 10:50:35,975 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-27T08:24:13.826022912 to 2005-08-27T14:52:45.529061760 (0 days 00:00:00.219985024 before mission_end) INFO 2025-06-26 10:50:35,976 resample.py get_mission_start_end():1145 [1] isus : 2005-08-27T08:25:12.741986688 to 2005-08-27T14:52:44.759114496 (0 days 00:00:00.989932288 before mission_end) INFO 2025-06-26 10:50:35,978 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-27T08:23:45.217948416 to 2005-08-27T14:52:44.749080960 (0 days 00:00:00.999965824 before mission_end) INFO 2025-06-26 10:50:35,979 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-27T08:23:45.657952512 to 2005-08-27T14:52:45.679051392 (0 days 00:00:00.069995392 before mission_end) INFO 2025-06-26 10:50:35,980 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_align.nc mission netCDF file INFO 2025-06-26 10:50:35,980 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,238 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,281 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,323 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,365 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,403 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,441 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,478 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,515 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,550 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,584 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,618 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,650 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,684 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,717 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,751 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,785 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,821 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,857 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,891 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,926 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,961 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:36,995 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,012 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,027 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,041 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,057 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,097 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:37,323 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_1S.nc INFO 2025-06-26 10:50:38,398 create_products.py gulper_odv():401 [1] No gulper times found for 2005.239.02 INFO 2025-06-26 10:50:38,399 process.py archive():337 [1] Archiving steps for 2005.239.02 INFO 2025-06-26 10:50:38,399 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:50:38,400 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:50:38,400 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.02_1S.nc INFO 2025-06-26 10:50:38,422 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:38,423 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.02_cal.nc INFO 2025-06-26 10:50:38,539 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:38,539 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.02_align.nc INFO 2025-06-26 10:50:38,655 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:38,682 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,708 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,712 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,730 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,812 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,817 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,854 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,879 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,949 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.02 done. INFO 2025-06-26 10:50:38,950 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:50:38,950 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.02/dorado_2005.239.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf