INFO 2025-06-26 10:49:37,353 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:49:37,353 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:49:37,353 process.py process_mission():449 [1] Processing LOCO mission 2005.239.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:49:37,353 process.py download_process():165 [1] Download and processing steps for 2005.239.01 INFO 2025-06-26 10:49:37,354 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005239/2005.239.01 INFO 2025-06-26 10:49:37,354 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005239/2005.239.01 to /data/auv_data/dorado/missionlogs/2005.239.01 INFO 2025-06-26 10:49:37,993 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.239.01 INFO 2025-06-26 10:49:37,993 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/ctdDriver.log (7423371 bytes) INFO 2025-06-26 10:49:38,549 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/ctdDriver2.log (7423453 bytes) INFO 2025-06-26 10:49:39,104 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/gps.log (96188 bytes) INFO 2025-06-26 10:49:39,124 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/hydroscatlog.log (5065154 bytes) INFO 2025-06-26 10:49:39,711 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/navigation.log (24892698 bytes) INFO 2025-06-26 10:49:41,510 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/isuslog.log (453397 bytes) INFO 2025-06-26 10:49:41,557 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/parosci.log (10836470 bytes) INFO 2025-06-26 10:49:42,458 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/tailCone.log (5067691 bytes) INFO 2025-06-26 10:49:43,083 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.239.01/biolume.log (5746956 bytes) INFO 2025-06-26 10:49:43,631 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:49:43,928 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.93 seconds WARNING 2025-06-26 10:49:43,928 process.py download_process():196 [1] No lopc.bin file for 2005.239.01 INFO 2025-06-26 10:49:43,928 process.py calibrate():227 [1] Calibration steps for 2005.239.01 INFO 2025-06-26 10:49:44,114 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:49:44,116 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:49:45,131 calibrate.py _nudge_pos():1806 [1] 124: 0.190 -0.0001648 0.0000302 7564 25.21 -0.968 0.222 2005-08-27T02:46:06.955768576 INFO 2025-06-26 10:49:46,062 calibrate.py _nudge_pos():1806 [1] 222: 0.010 -0.0000457 0.0001074 8245 27.48 -0.247 0.724 2005-08-27T03:15:13.156145792 INFO 2025-06-26 10:49:46,907 calibrate.py _nudge_pos():1806 [1] 311: 0.200 -0.0002330 0.0000364 8409 28.03 -1.233 0.241 2005-08-27T03:44:42.954906240 INFO 2025-06-26 10:49:47,897 calibrate.py _nudge_pos():1806 [1] 416: 0.190 -0.0001479 -0.0000398 8149 27.16 -0.808 -0.272 2005-08-27T04:13:36.956119040 INFO 2025-06-26 10:49:48,674 calibrate.py _nudge_pos():1806 [1] 496: 0.010 -0.0006151 -0.0001363 9535 31.78 -2.872 -0.795 2005-08-27T04:46:43.150055424 INFO 2025-06-26 10:49:49,419 calibrate.py _nudge_pos():1806 [1] 573: 0.010 -0.0014742 0.0009113 8170 27.23 -8.031 6.201 2005-08-27T05:15:13.152912128 INFO 2025-06-26 10:49:50,144 calibrate.py _nudge_pos():1806 [1] 648: 0.010 -0.0014919 0.0003898 8145 27.15 -8.150 2.661 2005-08-27T05:43:37.156179968 INFO 2025-06-26 10:49:50,982 calibrate.py _nudge_pos():1806 [1] 735: 0.010 -0.0014475 0.0003001 7820 26.06 -8.234 2.134 2005-08-27T06:11:07.153147520 INFO 2025-06-26 10:49:51,826 calibrate.py _nudge_pos():1806 [1] 823: 0.010 -0.0009980 0.0002479 5685 18.95 -7.807 2.425 2005-08-27T06:31:31.149297920 INFO 2025-06-26 10:49:52,658 calibrate.py _nudge_pos():1806 [1] 909: 0.020 -0.0018766 -0.0017389 6985 23.28 -11.946 -13.841 2005-08-27T06:56:13.147773952 INFO 2025-06-26 10:49:53,507 calibrate.py _nudge_pos():1806 [1] 996: 0.010 -0.0022799 -0.0018693 7760 25.86 -13.060 -13.392 2005-08-27T07:23:31.155562880 INFO 2025-06-26 10:49:54,433 calibrate.py _nudge_pos():1806 [1] 1092: 0.020 -0.0022674 -0.0019763 7955 26.51 -12.668 -13.812 2005-08-27T07:51:37.150064256 INFO 2025-06-26 10:49:55,422 calibrate.py _nudge_pos():1806 [1] 1194: 0.020 -0.0014068 -0.0010064 4595 15.31 -13.606 -12.178 2005-08-27T08:08:37.150189440 INFO 2025-06-26 10:49:56,674 calibrate.py _nudge_pos():1862 [1] 1302: - - - 3 0.01 - - INFO 2025-06-26 10:49:56,674 calibrate.py _nudge_pos():1868 [1] Points in final series = 105254 WARNING 2025-06-26 10:49:56,848 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:49:56,993 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 84404 INFO 2025-06-26 10:49:57,652 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:49:58,461 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:49:59,090 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:49:59,092 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.239.01/ctd1.nc INFO 2025-06-26 10:49:59,093 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:49:59,094 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:49:59,094 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:49:59,846 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:00,482 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:50:00,484 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.239.01/ctd2.nc INFO 2025-06-26 10:50:00,486 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:50:00,486 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:50:00,486 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:50:00,521 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:50:01,502 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 58920 59700 255660 284880 402960 1199580] INFO 2025-06-26 10:50:01,692 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:50:01,698 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:50:01,698 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.239.01 ERROR 2025-06-26 10:50:01,698 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.239.01 INFO 2025-06-26 10:50:01,781 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_cal.nc INFO 2025-06-26 10:50:01,878 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:50:01,884 process.py align():251 [1] Alignment steps for 2005.239.01 INFO 2025-06-26 10:50:01,913 align.py process_cal():139 [1] Processing dorado_2005.239.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.239.01 INFO 2025-06-26 10:50:01,944 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:01,948 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:02,027 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:02,032 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:02,106 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:02,111 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:02,156 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:50:02,157 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:50:02,186 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:50:02,191 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:02,265 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:02,269 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,336 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:02,340 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,407 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:50:02,411 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,476 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,481 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,548 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,552 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,616 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,621 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,686 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,691 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,757 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,761 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,826 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,831 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,896 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,901 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:02,968 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:02,972 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,039 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,043 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,109 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,112 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,179 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,183 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,249 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,254 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,321 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,326 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,392 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,396 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,461 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,465 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,530 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,535 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,599 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.239.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:50:03,603 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:50:03,684 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:03,742 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:03,799 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:50:03,859 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:50:03,922 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:50:03,974 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_align.nc INFO 2025-06-26 10:50:04,059 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:50:04,061 process.py resample():273 [1] Resampling steps for 2005.239.01 INFO 2025-06-26 10:50:04,062 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:50:04,088 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_align.nc mission netCDF file INFO 2025-06-26 10:50:04,094 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_align.nc mission netCDF file INFO 2025-06-26 10:50:04,095 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-27T02:19:13.156321536 to 2005-08-27T08:10:46.751311360 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:50:04,097 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-27T02:18:56.247479936 to 2005-08-27T08:10:46.541325568 (0 days 00:00:00.209985792 before mission_end) INFO 2025-06-26 10:50:04,099 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-27T02:19:20.095846144 to 2005-08-27T08:10:46.591322240 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 10:50:04,100 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-27T02:19:19.775867904 to 2005-08-27T08:10:46.521326976 (0 days 00:00:00.229984384 before mission_end) INFO 2025-06-26 10:50:04,102 resample.py get_mission_start_end():1145 [1] isus : 2005-08-27T02:20:18.361854592 to 2005-08-27T08:10:45.391404416 (0 days 00:00:01.359906944 before mission_end) INFO 2025-06-26 10:50:04,103 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-27T02:18:51.107797632 to 2005-08-27T08:10:45.871337216 (0 days 00:00:00.879974144 before mission_end) INFO 2025-06-26 10:50:04,105 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-27T02:18:52.217755776 to 2005-08-27T08:10:46.571323648 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 10:50:04,106 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_align.nc mission netCDF file INFO 2025-06-26 10:50:04,106 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,342 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,382 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,421 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,459 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,493 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,527 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,560 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,593 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,624 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,654 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,684 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,715 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,746 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,776 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,806 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,836 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,869 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,901 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,934 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,967 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:04,998 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,032 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,047 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,062 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,075 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,090 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,128 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:50:05,346 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_1S.nc INFO 2025-06-26 10:50:06,389 create_products.py gulper_odv():401 [1] No gulper times found for 2005.239.01 INFO 2025-06-26 10:50:06,389 process.py archive():337 [1] Archiving steps for 2005.239.01 INFO 2025-06-26 10:50:06,389 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:50:06,390 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:50:06,391 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.01_1S.nc INFO 2025-06-26 10:50:06,415 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:06,416 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.01_cal.nc INFO 2025-06-26 10:50:06,525 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:06,526 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.239.01_align.nc INFO 2025-06-26 10:50:06,635 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:50:06,664 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,688 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,693 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,711 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,780 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,787 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,820 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,842 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,905 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005239/2005.239.01 done. INFO 2025-06-26 10:50:06,906 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:50:06,906 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.239.01/dorado_2005.239.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf