INFO 2025-06-26 10:49:00,967 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:49:00,967 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:49:00,967 process.py process_mission():449 [1] Processing LOCO mission 2005.238.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:49:00,967 process.py download_process():165 [1] Download and processing steps for 2005.238.02 INFO 2025-06-26 10:49:00,968 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.02 INFO 2025-06-26 10:49:00,968 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.02 to /data/auv_data/dorado/missionlogs/2005.238.02 INFO 2025-06-26 10:49:01,693 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.238.02 INFO 2025-06-26 10:49:01,693 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/ctdDriver.log (8140571 bytes) INFO 2025-06-26 10:49:02,326 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/ctdDriver2.log (8140565 bytes) INFO 2025-06-26 10:49:02,931 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/gps.log (96188 bytes) INFO 2025-06-26 10:49:02,951 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/hydroscatlog.log (5553494 bytes) INFO 2025-06-26 10:49:03,605 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/navigation.log (27296358 bytes) INFO 2025-06-26 10:49:05,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/isuslog.log (497557 bytes) INFO 2025-06-26 10:49:05,594 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/parosci.log (11881766 bytes) INFO 2025-06-26 10:49:06,584 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/tailCone.log (5556667 bytes) INFO 2025-06-26 10:49:07,261 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.02/biolume.log (6301020 bytes) INFO 2025-06-26 10:49:07,857 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:49:08,177 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.48 seconds WARNING 2025-06-26 10:49:08,177 process.py download_process():196 [1] No lopc.bin file for 2005.238.02 INFO 2025-06-26 10:49:08,177 process.py calibrate():227 [1] Calibration steps for 2005.238.02 INFO 2025-06-26 10:49:08,375 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:49:08,377 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:49:09,119 calibrate.py _nudge_pos():1806 [1] 94: 0.030 -0.0001876 0.0000928 8290 27.63 -1.006 0.622 2005-08-26T11:06:24.320692096 INFO 2025-06-26 10:49:10,037 calibrate.py _nudge_pos():1806 [1] 189: 0.030 -0.0002184 0.0000846 8170 27.23 -1.189 0.576 2005-08-26T11:35:12.322315904 INFO 2025-06-26 10:49:10,959 calibrate.py _nudge_pos():1806 [1] 284: 0.020 -0.0001883 0.0000393 8410 28.03 -0.996 0.260 2005-08-26T12:04:48.320651776 INFO 2025-06-26 10:49:10,969 calibrate.py _nudge_pos():1806 [1] 285: 0.030 0.0000217 -0.0000082 25 0.08 40.176 -19.044 2005-08-26T12:04:53.320309120 INFO 2025-06-26 10:49:11,796 calibrate.py _nudge_pos():1806 [1] 370: 0.030 -0.0002844 0.0000252 8345 27.81 -1.516 0.168 2005-08-26T12:34:06.320220416 INFO 2025-06-26 10:49:12,633 calibrate.py _nudge_pos():1806 [1] 456: 0.040 -0.0002801 -0.0001465 8305 27.68 -1.501 -0.981 2005-08-26T13:03:12.320611200 INFO 2025-06-26 10:49:12,663 calibrate.py _nudge_pos():1806 [1] 459: 0.030 0.0000114 0.0000183 15 0.05 36.264 72.575 2005-08-26T13:03:17.320268928 INFO 2025-06-26 10:49:13,583 calibrate.py _nudge_pos():1806 [1] 552: 0.040 -0.0003615 -0.0003227 9685 32.28 -1.662 -1.852 2005-08-26T13:37:06.321272576 INFO 2025-06-26 10:49:14,455 calibrate.py _nudge_pos():1806 [1] 640: 0.040 -0.0015341 0.0010394 8355 27.85 -8.172 6.916 2005-08-26T14:06:24.320841600 INFO 2025-06-26 10:49:15,319 calibrate.py _nudge_pos():1806 [1] 727: 0.030 -0.0014318 0.0004034 8150 27.16 -7.817 2.752 2005-08-26T14:35:00.323287296 INFO 2025-06-26 10:49:16,197 calibrate.py _nudge_pos():1806 [1] 814: 0.040 -0.0014301 0.0004164 7730 25.76 -8.229 2.995 2005-08-26T15:02:12.321487616 INFO 2025-06-26 10:49:17,190 calibrate.py _nudge_pos():1806 [1] 913: 0.030 -0.0010673 0.0001888 5690 18.96 -8.342 1.845 2005-08-26T15:22:48.326815616 INFO 2025-06-26 10:49:18,139 calibrate.py _nudge_pos():1806 [1] 1007: 0.040 -0.0017229 -0.0017441 7185 23.95 -10.662 -13.496 2005-08-26T15:48:18.322003584 INFO 2025-06-26 10:49:18,999 calibrate.py _nudge_pos():1806 [1] 1092: 0.030 -0.0022213 -0.0018751 8010 26.70 -12.327 -13.015 2005-08-26T16:16:24.326504448 INFO 2025-06-26 10:49:19,978 calibrate.py _nudge_pos():1806 [1] 1186: 0.030 -0.0023292 -0.0019216 8175 27.25 -12.662 -13.069 2005-08-26T16:45:12.328128384 INFO 2025-06-26 10:49:20,892 calibrate.py _nudge_pos():1806 [1] 1269: 0.040 -0.0014436 -0.0009715 4690 15.63 -13.679 -11.518 2005-08-26T17:02:12.328253568 INFO 2025-06-26 10:49:21,442 calibrate.py _nudge_pos():1862 [1] 1302: - - - 1 0.00 - - INFO 2025-06-26 10:49:21,442 calibrate.py _nudge_pos():1868 [1] Points in final series = 115654 WARNING 2025-06-26 10:49:21,632 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:49:22,496 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:49:23,377 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:49:24,070 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:49:24,072 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.238.02/ctd1.nc INFO 2025-06-26 10:49:24,074 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:49:24,075 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:49:24,075 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:49:24,896 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:49:25,595 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:49:25,597 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.238.02/ctd2.nc INFO 2025-06-26 10:49:25,599 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:49:25,599 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:49:25,599 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:49:25,635 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:49:26,685 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62 63 64 65] INFO 2025-06-26 10:49:26,895 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:49:26,901 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:49:26,901 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.02 ERROR 2025-06-26 10:49:26,901 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.02 INFO 2025-06-26 10:49:26,992 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_cal.nc INFO 2025-06-26 10:49:27,093 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:49:27,097 process.py align():251 [1] Alignment steps for 2005.238.02 INFO 2025-06-26 10:49:27,126 align.py process_cal():139 [1] Processing dorado_2005.238.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.238.02 INFO 2025-06-26 10:49:27,161 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:49:27,165 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:49:27,249 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:49:27,254 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:49:27,337 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:49:27,342 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:49:27,393 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:49:27,393 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:49:27,426 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:49:27,431 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:49:27,509 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:49:27,513 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,583 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:49:27,588 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,658 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:49:27,663 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,733 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:27,737 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,809 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:27,814 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,883 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:27,888 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:27,959 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:27,964 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,036 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,040 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,114 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,118 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,188 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,193 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,264 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,269 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,339 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,344 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,414 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,418 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,489 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,494 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,564 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,569 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,639 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,644 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,715 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,719 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,790 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,794 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,866 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,871 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:28,946 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:49:28,950 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:49:29,041 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:49:29,105 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:49:29,167 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:49:29,234 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:49:29,302 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:49:29,358 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_align.nc INFO 2025-06-26 10:49:29,441 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:49:29,443 process.py resample():273 [1] Resampling steps for 2005.238.02 INFO 2025-06-26 10:49:29,444 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:49:29,469 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_align.nc mission netCDF file INFO 2025-06-26 10:49:29,475 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_align.nc mission netCDF file INFO 2025-06-26 10:49:29,477 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-26T10:37:35.939094272 to 2005-08-26T17:03:06.524540672 (0 days 00:00:00.069995392 before mission_end) INFO 2025-06-26 10:49:29,479 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-26T10:37:20.010185728 to 2005-08-26T17:03:06.584536576 (0 days 00:00:00.009999488 before mission_end) INFO 2025-06-26 10:49:29,480 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-26T10:37:42.638635392 to 2005-08-26T17:03:06.594536064 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:49:29,482 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-26T10:37:42.618636800 to 2005-08-26T17:03:06.574537216 (0 days 00:00:00.019998848 before mission_end) INFO 2025-06-26 10:49:29,484 resample.py get_mission_start_end():1145 [1] isus : 2005-08-26T10:38:40.624663168 to 2005-08-26T17:03:06.214561920 (0 days 00:00:00.379974144 before mission_end) INFO 2025-06-26 10:49:29,485 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-26T10:37:14.210548608 to 2005-08-26T17:03:05.654566016 (0 days 00:00:00.939970048 before mission_end) INFO 2025-06-26 10:49:29,487 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-26T10:37:14.300576640 to 2005-08-26T17:03:06.474544256 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:49:29,487 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_align.nc mission netCDF file INFO 2025-06-26 10:49:29,488 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,740 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,782 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,825 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,867 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,905 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,943 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:29,979 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,016 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,050 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,083 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,117 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,150 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,184 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,217 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,250 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,283 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,319 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,353 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,388 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,422 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,457 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,490 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,507 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,521 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,535 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,551 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,591 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:49:30,814 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_1S.nc INFO 2025-06-26 10:49:31,886 create_products.py gulper_odv():401 [1] No gulper times found for 2005.238.02 INFO 2025-06-26 10:49:31,886 process.py archive():337 [1] Archiving steps for 2005.238.02 INFO 2025-06-26 10:49:31,886 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:49:31,887 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:49:31,889 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.02_1S.nc INFO 2025-06-26 10:49:31,910 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:31,911 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.02_cal.nc INFO 2025-06-26 10:49:32,026 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:32,027 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.02_align.nc INFO 2025-06-26 10:49:32,127 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:32,156 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,183 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,188 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,206 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,283 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,290 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,324 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,347 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,413 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.02 done. INFO 2025-06-26 10:49:32,413 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:49:32,413 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.02/dorado_2005.238.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf