INFO 2025-06-26 10:48:42,821 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:48:42,821 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:48:42,821 process.py process_mission():449 [1] Processing LOCO mission 2005.238.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:48:42,821 process.py download_process():165 [1] Download and processing steps for 2005.238.01 INFO 2025-06-26 10:48:42,821 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.01 INFO 2025-06-26 10:48:42,821 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.01 to /data/auv_data/dorado/missionlogs/2005.238.01 INFO 2025-06-26 10:48:43,244 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.238.01 INFO 2025-06-26 10:48:43,244 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/ctdDriver.log (4271211 bytes) INFO 2025-06-26 10:48:43,552 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/ctdDriver2.log (4271117 bytes) INFO 2025-06-26 10:48:43,862 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/gps.log (59468 bytes) INFO 2025-06-26 10:48:43,877 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/hydroscatlog.log (2916914 bytes) INFO 2025-06-26 10:48:44,247 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/navigation.log (14325798 bytes) INFO 2025-06-26 10:48:45,293 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/isuslog.log (260725 bytes) INFO 2025-06-26 10:48:45,322 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/parosci.log (6240182 bytes) INFO 2025-06-26 10:48:45,855 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/tailCone.log (2918683 bytes) INFO 2025-06-26 10:48:46,230 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.01/biolume.log (3310924 bytes) INFO 2025-06-26 10:48:46,546 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:48:46,719 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.48 seconds WARNING 2025-06-26 10:48:46,720 process.py download_process():196 [1] No lopc.bin file for 2005.238.01 INFO 2025-06-26 10:48:46,720 process.py calibrate():227 [1] Calibration steps for 2005.238.01 INFO 2025-06-26 10:48:46,851 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:48:46,853 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:48:47,881 calibrate.py _nudge_pos():1806 [1] 125: 0.030 -0.0013271 0.0008850 7885 26.28 -7.491 6.240 2005-08-26T07:40:06.298644736 INFO 2025-06-26 10:48:48,679 calibrate.py _nudge_pos():1806 [1] 210: 0.030 -0.0014996 0.0003606 8070 26.90 -8.268 2.484 2005-08-26T08:08:24.302323584 INFO 2025-06-26 10:48:49,585 calibrate.py _nudge_pos():1806 [1] 307: 0.030 -0.0012911 0.0004568 7890 26.30 -7.279 3.219 2005-08-26T08:36:18.297646976 INFO 2025-06-26 10:48:50,381 calibrate.py _nudge_pos():1806 [1] 391: 0.040 -0.0010170 0.0001980 5615 18.71 -8.055 1.961 2005-08-26T08:56:24.295030656 INFO 2025-06-26 10:48:51,354 calibrate.py _nudge_pos():1806 [1] 491: 0.040 -0.0016592 -0.0017150 6885 22.95 -10.715 -13.849 2005-08-26T09:21:00.293917696 INFO 2025-06-26 10:48:52,258 calibrate.py _nudge_pos():1806 [1] 587: 0.040 -0.0022359 -0.0019137 7955 26.51 -12.495 -13.375 2005-08-26T09:49:06.298418560 INFO 2025-06-26 10:48:53,106 calibrate.py _nudge_pos():1806 [1] 677: 0.040 -0.0022262 -0.0019032 7895 26.31 -12.532 -13.402 2005-08-26T10:16:54.294152960 INFO 2025-06-26 10:48:54,046 calibrate.py _nudge_pos():1806 [1] 776: 0.040 -0.0014423 -0.0009711 4580 15.26 -13.995 -11.790 2005-08-26T10:33:48.294689152 INFO 2025-06-26 10:48:54,403 calibrate.py _nudge_pos():1862 [1] 792: - - - 5 0.01 - - INFO 2025-06-26 10:48:54,403 calibrate.py _nudge_pos():1868 [1] Points in final series = 60694 WARNING 2025-06-26 10:48:54,506 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:48:54,958 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:55,432 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:48:55,804 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:48:55,806 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.238.01/ctd1.nc INFO 2025-06-26 10:48:55,807 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:48:55,807 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:48:55,807 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:48:56,248 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:56,615 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:56,617 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.238.01/ctd2.nc INFO 2025-06-26 10:48:56,618 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 10:48:56,618 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:48:56,618 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:48:56,640 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:48:57,342 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:48:57,348 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:48:57,348 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.01 ERROR 2025-06-26 10:48:57,348 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.01 INFO 2025-06-26 10:48:57,397 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_cal.nc INFO 2025-06-26 10:48:57,469 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:48:57,473 process.py align():251 [1] Alignment steps for 2005.238.01 INFO 2025-06-26 10:48:57,499 align.py process_cal():139 [1] Processing dorado_2005.238.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.238.01 INFO 2025-06-26 10:48:57,520 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:57,523 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:57,572 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:57,575 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:57,622 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:57,626 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:57,654 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:48:57,654 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:48:57,674 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:57,677 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:57,723 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:57,726 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,768 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:57,772 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,813 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:57,816 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,858 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:57,862 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,907 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:57,911 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,953 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:57,956 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:57,998 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,001 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,044 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,047 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,088 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,091 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,132 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,135 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,176 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,179 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,220 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,224 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,267 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,270 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,311 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,314 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,356 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,359 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,402 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,406 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,449 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,452 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,504 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,507 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,551 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,555 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,597 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:58,600 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:58,661 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:58,701 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:58,740 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:58,781 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:48:58,824 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:58,859 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_align.nc INFO 2025-06-26 10:48:58,924 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:48:58,927 process.py resample():273 [1] Resampling steps for 2005.238.01 INFO 2025-06-26 10:48:58,928 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:48:58,952 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_align.nc mission netCDF file INFO 2025-06-26 10:48:58,957 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_align.nc mission netCDF file INFO 2025-06-26 10:48:58,959 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-26T07:12:07.743633792 to 2005-08-26T10:34:26.302085376 (0 days 00:00:00.019998848 before mission_end) INFO 2025-06-26 10:48:58,960 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-26T07:11:50.974782464 to 2005-08-26T10:34:26.162095104 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 10:48:58,961 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-26T07:12:14.603163776 to 2005-08-26T10:34:26.322084224 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:48:58,963 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-26T07:12:14.793150720 to 2005-08-26T10:34:26.262088320 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:48:58,964 resample.py get_mission_start_end():1145 [1] isus : 2005-08-26T07:13:12.399204480 to 2005-08-26T10:34:26.172094336 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 10:48:58,966 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-26T07:11:45.795103104 to 2005-08-26T10:34:25.492106624 (0 days 00:00:00.829977600 before mission_end) INFO 2025-06-26 10:48:58,967 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-26T07:11:46.105115904 to 2005-08-26T10:34:26.282086912 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 10:48:58,968 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_align.nc mission netCDF file INFO 2025-06-26 10:48:58,968 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,113 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,140 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,165 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,191 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,214 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,237 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,259 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,282 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,304 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,325 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,345 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,366 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,386 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,408 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,430 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,451 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,473 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,496 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,518 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,540 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,562 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,584 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,596 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,608 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,619 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,631 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,657 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:59,819 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_1S.nc INFO 2025-06-26 10:49:00,649 create_products.py gulper_odv():401 [1] No gulper times found for 2005.238.01 INFO 2025-06-26 10:49:00,649 process.py archive():337 [1] Archiving steps for 2005.238.01 INFO 2025-06-26 10:49:00,649 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:49:00,649 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:49:00,651 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.01_1S.nc INFO 2025-06-26 10:49:00,666 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:00,667 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.01_cal.nc INFO 2025-06-26 10:49:00,720 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:00,721 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.01_align.nc INFO 2025-06-26 10:49:00,774 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:49:00,792 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,809 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,813 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,826 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,868 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,874 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,894 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,909 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,943 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.01 done. INFO 2025-06-26 10:49:00,944 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:49:00,944 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.01/dorado_2005.238.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf