INFO 2025-06-26 10:48:26,059 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:48:26,059 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:48:26,060 process.py process_mission():449 [1] Processing LOCO mission 2005.238.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:48:26,060 process.py download_process():165 [1] Download and processing steps for 2005.238.00 INFO 2025-06-26 10:48:26,060 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.00 INFO 2025-06-26 10:48:26,060 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005238/2005.238.00 to /data/auv_data/dorado/missionlogs/2005.238.00 INFO 2025-06-26 10:48:26,450 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.238.00 INFO 2025-06-26 10:48:26,450 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/ctdDriver.log (3931003 bytes) INFO 2025-06-26 10:48:26,741 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/ctdDriver2.log (3930997 bytes) INFO 2025-06-26 10:48:27,041 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/gps.log (49532 bytes) INFO 2025-06-26 10:48:27,055 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/hydroscatlog.log (2684834 bytes) INFO 2025-06-26 10:48:27,382 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/navigation.log (13183322 bytes) INFO 2025-06-26 10:48:28,338 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/isuslog.log (239893 bytes) INFO 2025-06-26 10:48:28,366 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/parosci.log (5744390 bytes) INFO 2025-06-26 10:48:28,859 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/tailCone.log (2686507 bytes) INFO 2025-06-26 10:48:29,193 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.238.00/biolume.log (3047628 bytes) INFO 2025-06-26 10:48:29,496 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:48:29,655 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.20 seconds WARNING 2025-06-26 10:48:29,656 process.py download_process():196 [1] No lopc.bin file for 2005.238.00 INFO 2025-06-26 10:48:29,656 process.py calibrate():227 [1] Calibration steps for 2005.238.00 INFO 2025-06-26 10:48:29,781 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:48:29,783 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:48:30,788 calibrate.py _nudge_pos():1806 [1] 126: 0.110 -0.0007794 -0.0004053 2665 8.88 -12.999 -8.457 2005-08-26T04:12:42.211123200 INFO 2025-06-26 10:48:31,376 calibrate.py _nudge_pos():1806 [1] 189: 0.120 -0.0002642 0.0000004 7850 26.16 -1.496 0.003 2005-08-26T04:39:54.209323648 INFO 2025-06-26 10:48:32,269 calibrate.py _nudge_pos():1806 [1] 285: 0.110 -0.0002454 0.0000522 7835 26.11 -1.393 0.371 2005-08-26T05:07:36.205469184 INFO 2025-06-26 10:48:33,190 calibrate.py _nudge_pos():1806 [1] 384: 0.120 -0.0002035 0.0000409 8300 27.66 -1.090 0.274 2005-08-26T05:36:54.205037824 INFO 2025-06-26 10:48:34,030 calibrate.py _nudge_pos():1806 [1] 473: 0.110 -0.0002476 0.0000253 8290 27.63 -1.329 0.169 2005-08-26T06:06:00.205428608 INFO 2025-06-26 10:48:34,970 calibrate.py _nudge_pos():1806 [1] 571: 0.120 -0.0001371 -0.0000018 8455 28.18 -0.721 -0.012 2005-08-26T06:35:48.212941696 INFO 2025-06-26 10:48:35,887 calibrate.py _nudge_pos():1806 [1] 659: 0.120 -0.0000550 0.0002226 9225 30.75 -0.265 1.342 2005-08-26T07:08:00.210590848 INFO 2025-06-26 10:48:36,058 calibrate.py _nudge_pos():1862 [1] 654: - - - 4 0.01 - - INFO 2025-06-26 10:48:36,058 calibrate.py _nudge_pos():1868 [1] Points in final series = 55853 WARNING 2025-06-26 10:48:36,158 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:48:36,614 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:37,077 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:37,438 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:37,440 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.238.00/ctd1.nc INFO 2025-06-26 10:48:37,442 calibrate.py _range_qc_combined_nc():898 [1] Setting 375 ctd1_salinity values to NaN INFO 2025-06-26 10:48:37,442 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:48:37,442 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:48:37,859 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:38,206 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:48:38,208 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.238.00/ctd2.nc INFO 2025-06-26 10:48:38,210 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:48:38,210 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:48:38,210 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:48:38,232 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:48:38,850 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [201480 329160] INFO 2025-06-26 10:48:38,959 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:48:38,966 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:48:38,966 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.00 ERROR 2025-06-26 10:48:38,966 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.238.00 INFO 2025-06-26 10:48:39,017 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_cal.nc INFO 2025-06-26 10:48:39,096 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:48:39,102 process.py align():251 [1] Alignment steps for 2005.238.00 INFO 2025-06-26 10:48:39,133 align.py process_cal():139 [1] Processing dorado_2005.238.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.238.00 INFO 2025-06-26 10:48:39,159 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:39,165 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:39,220 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:39,224 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:39,271 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:39,275 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:39,304 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:48:39,305 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:48:39,324 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:48:39,328 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:39,377 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:39,381 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,424 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:39,428 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,470 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:48:39,474 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,516 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,520 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,563 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,567 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,632 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,636 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,677 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,681 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,724 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,728 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,771 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,775 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,820 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,825 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,876 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,881 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,922 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,926 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:39,969 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:39,972 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,018 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,023 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,065 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,069 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,111 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,115 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,158 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,162 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,206 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,210 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,254 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,258 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,302 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.238.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:48:40,306 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:48:40,371 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:40,420 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:40,462 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:48:40,506 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:48:40,551 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:48:40,589 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_align.nc INFO 2025-06-26 10:48:40,659 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:48:40,662 process.py resample():273 [1] Resampling steps for 2005.238.00 INFO 2025-06-26 10:48:40,663 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:48:40,691 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_align.nc mission netCDF file INFO 2025-06-26 10:48:40,696 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_align.nc mission netCDF file INFO 2025-06-26 10:48:40,698 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-26T04:02:06.624663808 to 2005-08-26T07:08:17.009440000 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 10:48:40,700 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-26T04:01:49.335848064 to 2005-08-26T07:08:16.999440640 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:48:40,701 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-26T04:02:11.864304768 to 2005-08-26T07:08:17.089434624 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:48:40,703 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-26T04:02:11.744312960 to 2005-08-26T07:08:16.969442816 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:48:40,704 resample.py get_mission_start_end():1145 [1] isus : 2005-08-26T04:03:11.030251776 to 2005-08-26T07:08:16.649464576 (0 days 00:00:00.439970048 before mission_end) INFO 2025-06-26 10:48:40,705 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-26T04:01:44.496145536 to 2005-08-26T07:08:16.299454464 (0 days 00:00:00.789980160 before mission_end) INFO 2025-06-26 10:48:40,707 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-26T04:01:45.206130944 to 2005-08-26T07:08:16.999440640 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:48:40,707 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_align.nc mission netCDF file INFO 2025-06-26 10:48:40,708 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:40,858 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:40,886 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:40,916 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:40,943 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:40,971 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,003 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,028 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,053 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,076 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,100 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,122 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,145 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,168 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,191 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,214 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,237 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,264 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,289 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,313 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,336 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,360 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,384 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,399 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,412 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,425 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,439 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,468 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:48:41,627 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_1S.nc INFO 2025-06-26 10:48:42,488 create_products.py gulper_odv():401 [1] No gulper times found for 2005.238.00 INFO 2025-06-26 10:48:42,488 process.py archive():337 [1] Archiving steps for 2005.238.00 INFO 2025-06-26 10:48:42,488 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:48:42,488 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:48:42,490 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.00_1S.nc INFO 2025-06-26 10:48:42,504 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:48:42,505 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.00_cal.nc INFO 2025-06-26 10:48:42,562 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:48:42,563 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.238.00_align.nc INFO 2025-06-26 10:48:42,617 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:48:42,634 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,650 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,655 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,668 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,706 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,712 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,733 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,749 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,786 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005238/2005.238.00 done. INFO 2025-06-26 10:48:42,786 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:48:42,787 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.238.00/dorado_2005.238.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf