INFO 2025-06-26 10:46:14,708 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:46:14,708 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Conducted from the Sproul on John Ryan's LOCO project - ctdToUse = ctd1 INFO 2025-06-26 10:46:14,708 process.py process_mission():449 [1] Processing LOCO mission 2005.230.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:46:14,708 process.py download_process():165 [1] Download and processing steps for 2005.230.00 INFO 2025-06-26 10:46:14,708 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005230/2005.230.00 INFO 2025-06-26 10:46:14,708 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005230/2005.230.00 to /data/auv_data/dorado/missionlogs/2005.230.00 INFO 2025-06-26 10:46:15,381 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.230.00 INFO 2025-06-26 10:46:15,382 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/ctdDriver.log (8035763 bytes) INFO 2025-06-26 10:46:15,960 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/ctdDriver2.log (8035757 bytes) INFO 2025-06-26 10:46:16,554 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/gps.log (109364 bytes) INFO 2025-06-26 10:46:16,574 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/hydroscatlog.log (5482334 bytes) INFO 2025-06-26 10:46:17,250 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/navigation.log (26943774 bytes) INFO 2025-06-26 10:46:19,174 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/isuslog.log (490549 bytes) INFO 2025-06-26 10:46:19,226 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/parosci.log (11728838 bytes) INFO 2025-06-26 10:46:20,248 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/tailCone.log (5484859 bytes) INFO 2025-06-26 10:46:20,924 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.230.00/biolume.log (6219964 bytes) INFO 2025-06-26 10:46:21,506 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:46:21,823 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.44 seconds WARNING 2025-06-26 10:46:21,823 process.py download_process():196 [1] No lopc.bin file for 2005.230.00 INFO 2025-06-26 10:46:21,823 process.py calibrate():227 [1] Calibration steps for 2005.230.00 INFO 2025-06-26 10:46:22,022 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:46:22,024 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:46:23,058 calibrate.py _nudge_pos():1806 [1] 126: 0.100 0.0000035 -0.0000129 2275 7.58 0.069 -0.315 2005-08-18T15:52:49.007324160 INFO 2025-06-26 10:46:23,629 calibrate.py _nudge_pos():1806 [1] 186: 0.100 -0.0002246 0.0002270 7505 25.01 -1.330 1.681 2005-08-18T16:18:49.010456576 INFO 2025-06-26 10:46:24,641 calibrate.py _nudge_pos():1806 [1] 291: 0.110 -0.0003369 -0.0001263 7790 25.96 -1.923 -0.901 2005-08-18T16:46:31.006602112 INFO 2025-06-26 10:46:25,648 calibrate.py _nudge_pos():1806 [1] 392: 0.110 -0.0002170 -0.0000263 8320 27.73 -1.160 -0.176 2005-08-18T17:15:55.005760000 INFO 2025-06-26 10:46:26,625 calibrate.py _nudge_pos():1806 [1] 494: 0.120 -0.0003646 -0.0000867 8075 26.91 -2.009 -0.597 2005-08-18T17:44:31.008205696 INFO 2025-06-26 10:46:27,476 calibrate.py _nudge_pos():1806 [1] 583: 0.110 -0.0002162 -0.0007797 7480 24.93 -1.287 -5.795 2005-08-18T18:10:55.009694080 INFO 2025-06-26 10:46:28,401 calibrate.py _nudge_pos():1806 [1] 679: 0.120 -0.0006271 -0.0013519 9155 30.51 -3.050 -8.210 2005-08-18T18:43:01.007754368 INFO 2025-06-26 10:46:29,263 calibrate.py _nudge_pos():1806 [1] 764: 0.120 -0.0007107 0.0007799 8430 28.10 -3.752 5.144 2005-08-18T19:12:31.006500992 INFO 2025-06-26 10:46:30,135 calibrate.py _nudge_pos():1806 [1] 854: 0.110 -0.0015121 0.0004408 8015 26.71 -8.394 3.058 2005-08-18T19:40:43.010590848 INFO 2025-06-26 10:46:31,040 calibrate.py _nudge_pos():1806 [1] 946: 0.120 -0.0012073 0.0005063 7405 24.68 -7.252 3.802 2005-08-18T20:06:55.012901248 INFO 2025-06-26 10:46:31,860 calibrate.py _nudge_pos():1806 [1] 1029: 0.110 -0.0009557 0.0002847 5445 18.15 -7.806 2.907 2005-08-18T20:26:26.012682240 INFO 2025-06-26 10:46:32,802 calibrate.py _nudge_pos():1806 [1] 1126: 0.110 -0.0018216 -0.0016153 6835 22.78 -11.850 -13.139 2005-08-18T20:50:49.012460032 INFO 2025-06-26 10:46:33,787 calibrate.py _nudge_pos():1806 [1] 1226: 0.120 -0.0022264 -0.0018214 7635 25.45 -12.963 -13.263 2005-08-18T21:17:55.011071488 INFO 2025-06-26 10:46:34,639 calibrate.py _nudge_pos():1806 [1] 1313: 0.120 -0.0023174 -0.0018203 7910 26.36 -13.021 -12.794 2005-08-18T21:45:43.006805888 INFO 2025-06-26 10:46:35,592 calibrate.py _nudge_pos():1806 [1] 1408: 0.130 -0.0014661 -0.0008733 4540 15.13 -14.352 -10.695 2005-08-18T22:02:25.008164224 INFO 2025-06-26 10:46:36,570 calibrate.py _nudge_pos():1862 [1] 1485: - - - 0 0.00 - - INFO 2025-06-26 10:46:36,570 calibrate.py _nudge_pos():1868 [1] Points in final series = 114160 WARNING 2025-06-26 10:46:36,823 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:46:37,668 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:46:38,541 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:46:39,253 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:46:39,255 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.230.00/ctd1.nc INFO 2025-06-26 10:46:39,257 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:46:39,257 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:46:39,257 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:46:40,092 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:46:40,839 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:46:40,842 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.230.00/ctd2.nc INFO 2025-06-26 10:46:40,843 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:46:40,843 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:46:40,844 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:46:40,879 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:46:41,936 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 2880 36600] INFO 2025-06-26 10:46:42,152 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:46:42,157 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:46:42,158 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.230.00 ERROR 2025-06-26 10:46:42,158 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.230.00 INFO 2025-06-26 10:46:42,247 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_cal.nc INFO 2025-06-26 10:46:42,347 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:46:42,353 process.py align():251 [1] Alignment steps for 2005.230.00 INFO 2025-06-26 10:46:42,382 align.py process_cal():139 [1] Processing dorado_2005.230.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.230.00 INFO 2025-06-26 10:46:42,419 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:46:42,423 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:46:42,517 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:46:42,522 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:46:42,611 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:46:42,617 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:46:42,678 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:46:42,678 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:46:42,716 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:46:42,722 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:46:42,812 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:46:42,817 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:42,897 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:46:42,902 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:42,979 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:46:42,985 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,063 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,068 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,143 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,148 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,254 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,261 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,377 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,383 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,469 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,474 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,551 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,556 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,633 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,638 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,713 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,718 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,795 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,800 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,877 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,881 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:43,956 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:43,962 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,040 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,045 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,122 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,128 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,201 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,206 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,285 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,290 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,364 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,371 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,493 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.230.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:46:44,501 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:46:44,633 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:46:44,707 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:46:44,777 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:46:44,848 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:46:44,923 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:46:44,988 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_align.nc INFO 2025-06-26 10:46:45,078 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:46:45,080 process.py resample():273 [1] Resampling steps for 2005.230.00 INFO 2025-06-26 10:46:45,081 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:46:45,112 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_align.nc mission netCDF file INFO 2025-06-26 10:46:45,118 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_align.nc mission netCDF file INFO 2025-06-26 10:46:45,120 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-18T15:43:31.435520384 to 2005-08-18T22:04:03.211436800 (0 days 00:00:00.099992960 before mission_end) INFO 2025-06-26 10:46:45,122 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-18T15:43:13.876723328 to 2005-08-18T22:04:03.241434624 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:46:45,124 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-18T15:43:37.115131392 to 2005-08-18T22:04:03.271432576 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:46:45,126 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-18T15:43:37.115131392 to 2005-08-18T22:04:03.281431936 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:46:45,128 resample.py get_mission_start_end():1145 [1] isus : 2005-08-18T15:44:34.201220736 to 2005-08-18T22:04:03.311429760 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:46:45,129 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-18T15:43:08.767039104 to 2005-08-18T22:04:02.331462656 (0 days 00:00:00.979967104 before mission_end) INFO 2025-06-26 10:46:45,131 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-18T15:43:09.307036416 to 2005-08-18T22:04:03.301430400 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-26 10:46:45,132 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_align.nc mission netCDF file INFO 2025-06-26 10:46:45,132 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,394 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,437 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,479 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,521 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,559 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,598 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,639 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,677 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,711 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,745 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,778 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,812 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,845 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,879 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,912 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,946 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:45,984 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,021 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,056 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,091 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,125 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,160 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,176 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,191 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,205 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,221 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,261 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:46:46,487 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_1S.nc INFO 2025-06-26 10:46:47,578 create_products.py gulper_odv():401 [1] No gulper times found for 2005.230.00 INFO 2025-06-26 10:46:47,578 process.py archive():337 [1] Archiving steps for 2005.230.00 INFO 2025-06-26 10:46:47,578 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:46:47,578 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:46:47,579 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.230.00_1S.nc INFO 2025-06-26 10:46:47,599 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:46:47,600 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.230.00_cal.nc INFO 2025-06-26 10:46:47,703 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:46:47,704 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.230.00_align.nc INFO 2025-06-26 10:46:47,796 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:46:47,822 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,847 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,853 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,872 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,954 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,960 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:47,992 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:48,014 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:48,077 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005230/2005.230.00 done. INFO 2025-06-26 10:46:48,077 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:46:48,077 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.230.00/dorado_2005.230.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf