INFO 2025-06-26 10:45:24,681 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:45:24,681 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 8/30/05 - ctdToUse = ctd1 INFO 2025-06-26 10:45:24,681 process.py process_mission():449 [1] Processing AUVCTD mission 2005.222.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:45:24,681 process.py download_process():165 [1] Download and processing steps for 2005.222.01 INFO 2025-06-26 10:45:24,681 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005222/2005.222.01 INFO 2025-06-26 10:45:24,681 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005222/2005.222.01 to /data/auv_data/dorado/missionlogs/2005.222.01 INFO 2025-06-26 10:45:25,129 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.222.01 INFO 2025-06-26 10:45:25,129 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/ctdDriver.log (4981371 bytes) INFO 2025-06-26 10:45:25,492 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/ctdDriver2.log (4981101 bytes) INFO 2025-06-26 10:45:25,853 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/gps.log (35924 bytes) INFO 2025-06-26 10:45:25,865 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/hydroscatlog.log (3400874 bytes) INFO 2025-06-26 10:45:26,267 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/navigation.log (16706566 bytes) INFO 2025-06-26 10:45:27,444 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/isuslog.log (304661 bytes) INFO 2025-06-26 10:45:27,478 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/parosci.log (7293590 bytes) INFO 2025-06-26 10:45:28,128 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/tailCone.log (3402475 bytes) INFO 2025-06-26 10:45:28,557 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.222.01/biolume.log (3859548 bytes) INFO 2025-06-26 10:45:28,927 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:45:29,127 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.00 seconds WARNING 2025-06-26 10:45:29,128 process.py download_process():196 [1] No lopc.bin file for 2005.222.01 INFO 2025-06-26 10:45:29,128 process.py calibrate():227 [1] Calibration steps for 2005.222.01 INFO 2025-06-26 10:45:29,273 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:45:29,275 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:45:29,984 calibrate.py _nudge_pos():1806 [1] 90: 0.180 0.0032197 -0.0010577 10690 35.63 13.419 -5.501 2005-08-10T18:11:06.758495616 INFO 2025-06-26 10:45:30,598 calibrate.py _nudge_pos():1806 [1] 155: 0.170 0.0049454 -0.0032139 10599 35.33 20.787 -16.858 2005-08-10T18:47:30.758881280 INFO 2025-06-26 10:45:31,251 calibrate.py _nudge_pos():1806 [1] 223: 0.190 0.0049396 -0.0026235 10645 35.48 20.671 -13.701 2005-08-10T19:24:06.758445056 INFO 2025-06-26 10:45:31,835 calibrate.py _nudge_pos():1806 [1] 284: 0.180 0.0041347 -0.0013482 10435 34.78 17.649 -7.183 2005-08-10T19:59:54.751297536 INFO 2025-06-26 10:45:32,538 calibrate.py _nudge_pos():1806 [1] 358: 0.200 0.0040512 -0.0014052 10465 34.88 17.242 -7.465 2005-08-10T20:36:00.752916096 INFO 2025-06-26 10:45:33,087 calibrate.py _nudge_pos():1806 [1] 415: 0.190 0.0005943 -0.0007487 11120 37.06 2.380 -3.743 2005-08-10T21:14:00.756725248 INFO 2025-06-26 10:45:33,781 calibrate.py _nudge_pos():1862 [1] 465: - - - 4532 15.10 - - INFO 2025-06-26 10:45:33,781 calibrate.py _nudge_pos():1868 [1] Points in final series = 70728 WARNING 2025-06-26 10:45:33,899 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:45:34,428 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:45:34,982 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:45:35,406 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:45:35,408 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.222.01/ctd1.nc INFO 2025-06-26 10:45:35,409 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:45:35,409 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:45:35,410 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:45:35,925 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:45:36,353 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:45:36,355 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.222.01/ctd2.nc INFO 2025-06-26 10:45:36,356 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:45:36,357 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:45:36,357 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:45:36,382 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:45:37,198 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:45:37,203 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:45:37,204 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.222.01 ERROR 2025-06-26 10:45:37,204 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.222.01 INFO 2025-06-26 10:45:37,261 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_cal.nc INFO 2025-06-26 10:45:37,339 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:45:37,343 process.py align():251 [1] Alignment steps for 2005.222.01 INFO 2025-06-26 10:45:37,369 align.py process_cal():139 [1] Processing dorado_2005.222.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.222.01 INFO 2025-06-26 10:45:37,392 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:45:37,395 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:45:37,449 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:45:37,453 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:45:37,505 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:45:37,509 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:45:37,541 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:45:37,541 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:45:37,562 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:45:37,566 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:45:37,619 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:45:37,623 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,670 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:45:37,674 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,720 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:45:37,723 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,771 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:37,774 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,821 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:37,825 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,871 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:37,875 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,921 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:37,925 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:37,975 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:37,979 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,027 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,031 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,078 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,082 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,129 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,132 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,179 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,183 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,230 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,233 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,280 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,283 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,330 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,334 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,384 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,388 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,436 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,440 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,487 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,491 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,540 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,544 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,592 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.222.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:45:38,596 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:45:38,656 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:45:38,699 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:45:38,741 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:45:38,785 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:45:38,832 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:45:38,870 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_align.nc INFO 2025-06-26 10:45:38,938 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:45:38,940 process.py resample():273 [1] Resampling steps for 2005.222.01 INFO 2025-06-26 10:45:38,941 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:45:38,966 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_align.nc mission netCDF file INFO 2025-06-26 10:45:38,971 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_align.nc mission netCDF file INFO 2025-06-26 10:45:38,972 resample.py get_mission_start_end():1145 [1] navigation: 2005-08-10T17:34:22.189518976 to 2005-08-10T21:30:18.379753344 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:45:38,974 resample.py get_mission_start_end():1145 [1] hs2 : 2005-08-10T17:34:05.980629248 to 2005-08-10T21:30:18.439749248 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:45:38,976 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-08-10T17:34:29.079046912 to 2005-08-10T21:30:18.219764480 (0 days 00:00:00.219984768 before mission_end) INFO 2025-06-26 10:45:38,977 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-08-10T17:34:29.559014144 to 2005-08-10T21:30:18.219764480 (0 days 00:00:00.219984768 before mission_end) INFO 2025-06-26 10:45:38,979 resample.py get_mission_start_end():1145 [1] isus : 2005-08-10T17:35:33.564629376 to 2005-08-10T21:30:18.079773952 (0 days 00:00:00.359975296 before mission_end) INFO 2025-06-26 10:45:38,980 resample.py get_mission_start_end():1145 [1] biolume : 2005-08-10T17:34:00.840947200 to 2005-08-10T21:30:17.319791744 (0 days 00:00:01.119957504 before mission_end) INFO 2025-06-26 10:45:38,981 resample.py get_mission_start_end():1145 [1] tailcone : 2005-08-10T17:34:02.720852608 to 2005-08-10T21:30:18.299758848 (0 days 00:00:00.139990400 before mission_end) INFO 2025-06-26 10:45:38,982 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_align.nc mission netCDF file INFO 2025-06-26 10:45:38,983 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,150 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,180 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,208 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,238 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,265 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,292 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,317 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,341 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,363 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,386 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,408 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,431 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,453 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,476 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,500 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,523 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,549 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,574 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,599 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,624 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,648 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,673 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,687 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,699 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,711 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,725 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,753 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:45:39,925 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_1S.nc INFO 2025-06-26 10:45:40,793 create_products.py gulper_odv():401 [1] No gulper times found for 2005.222.01 INFO 2025-06-26 10:45:40,794 process.py archive():337 [1] Archiving steps for 2005.222.01 INFO 2025-06-26 10:45:40,794 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:45:40,794 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:45:40,795 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.222.01_1S.nc INFO 2025-06-26 10:45:40,811 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:45:40,811 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.222.01_cal.nc INFO 2025-06-26 10:45:40,881 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:45:40,882 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.222.01_align.nc INFO 2025-06-26 10:45:40,941 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:45:40,961 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:40,980 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:40,984 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:40,999 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,046 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,052 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,075 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,093 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,136 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005222/2005.222.01 done. INFO 2025-06-26 10:45:41,136 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:45:41,137 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.222.01/dorado_2005.222.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf