INFO 2025-06-26 10:44:08,996 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:44:08,996 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/26/05 - ctdToUse = ctd1 INFO 2025-06-26 10:44:08,996 process.py process_mission():449 [1] Processing BIOLUME mission 2005.203.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:44:08,996 process.py download_process():165 [1] Download and processing steps for 2005.203.02 INFO 2025-06-26 10:44:08,996 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005203/2005.203.02 INFO 2025-06-26 10:44:08,996 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005203/2005.203.02 to /data/auv_data/dorado/missionlogs/2005.203.02 INFO 2025-06-26 10:44:09,770 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.203.02 INFO 2025-06-26 10:44:09,770 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/ctdDriver.log (8885139 bytes) INFO 2025-06-26 10:44:10,424 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/ctdDriver2.log (8885045 bytes) INFO 2025-06-26 10:44:11,089 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/gps.log (71852 bytes) INFO 2025-06-26 10:44:11,106 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/hydroscatlog.log (6060854 bytes) INFO 2025-06-26 10:44:11,835 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/navigation.log (29791114 bytes) INFO 2025-06-26 10:44:13,962 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/isuslog.log (544469 bytes) INFO 2025-06-26 10:44:14,032 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/parosci.log (12973094 bytes) INFO 2025-06-26 10:44:15,085 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.203.02/parosci.log: [ 90182 112229] INFO 2025-06-26 10:44:15,118 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/tailCone.log (6063883 bytes) INFO 2025-06-26 10:44:15,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.203.02/biolume.log (6876300 bytes) INFO 2025-06-26 10:44:16,526 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:44:16,875 logs2netcdfs.py download_process_logs():807 [1] Time to process: 7.10 seconds WARNING 2025-06-26 10:44:16,875 process.py download_process():196 [1] No lopc.bin file for 2005.203.02 INFO 2025-06-26 10:44:16,875 process.py calibrate():227 [1] Calibration steps for 2005.203.02 INFO 2025-06-26 10:44:17,082 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:44:17,083 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:44:18,134 calibrate.py _nudge_pos():1806 [1] 126: 0.060 -0.0007754 0.0000987 9110 30.36 -3.784 0.602 2005-07-22T04:57:12.737225984 INFO 2025-06-26 10:44:18,802 calibrate.py _nudge_pos():1806 [1] 195: 0.060 -0.0006670 0.0002709 9770 32.56 -3.036 1.542 2005-07-22T05:30:54.738709504 INFO 2025-06-26 10:44:19,387 calibrate.py _nudge_pos():1806 [1] 255: 0.070 -0.0023928 0.0000194 10295 34.31 -10.340 0.105 2005-07-22T06:06:12.733616768 INFO 2025-06-26 10:44:20,020 calibrate.py _nudge_pos():1806 [1] 320: 0.070 -0.0060004 -0.0008938 11410 38.03 -23.405 -4.355 2005-07-22T06:45:18.732904960 INFO 2025-06-26 10:44:20,627 calibrate.py _nudge_pos():1806 [1] 381: 0.070 -0.0038291 0.0001776 9900 33.00 -17.220 0.997 2005-07-22T07:19:18.733155200 INFO 2025-06-26 10:44:21,324 calibrate.py _nudge_pos():1806 [1] 449: 0.090 -0.0016834 0.0001864 10345 34.48 -7.247 1.002 2005-07-22T07:54:54.736829056 INFO 2025-06-26 10:44:21,953 calibrate.py _nudge_pos():1806 [1] 512: 0.090 -0.0008181 0.0000757 4700 15.66 -7.755 0.895 2005-07-22T08:11:36.738187264 INFO 2025-06-26 10:44:21,964 calibrate.py _nudge_pos():1806 [1] 513: 0.070 -0.0000130 -0.0000055 20 0.06 -30.507 -16.094 2005-07-22T08:11:40.737913344 INFO 2025-06-26 10:44:22,493 calibrate.py _nudge_pos():1806 [1] 567: 0.080 0.0002754 -0.0006227 10535 35.11 1.165 -3.286 2005-07-22T08:47:40.729943808 INFO 2025-06-26 10:44:23,032 calibrate.py _nudge_pos():1806 [1] 621: 0.070 0.0001815 -0.0004229 10095 33.65 0.801 -2.329 2005-07-22T09:22:12.738001408 INFO 2025-06-26 10:44:23,676 calibrate.py _nudge_pos():1806 [1] 686: 0.080 -0.0000411 -0.0002738 9790 32.63 -0.187 -1.555 2005-07-22T09:55:54.729485568 INFO 2025-06-26 10:44:24,195 calibrate.py _nudge_pos():1806 [1] 738: 0.080 0.0000365 -0.0001618 10275 34.25 0.159 -0.876 2005-07-22T10:31:00.735214208 INFO 2025-06-26 10:44:24,908 calibrate.py _nudge_pos():1806 [1] 810: 0.080 0.0000789 0.0000148 9845 32.81 0.358 0.084 2005-07-22T11:05:00.735464576 INFO 2025-06-26 10:44:25,503 calibrate.py _nudge_pos():1806 [1] 869: 0.080 0.0000046 0.0000057 2470 8.23 0.084 0.127 2005-07-22T11:14:12.737649920 INFO 2025-06-26 10:44:26,143 calibrate.py _nudge_pos():1806 [1] 933: 0.080 -0.0000108 0.0000095 2925 9.75 -0.165 0.181 2005-07-22T11:25:00.733259264 INFO 2025-06-26 10:44:26,687 calibrate.py _nudge_pos():1862 [1] 964: - - - 2 0.00 - - INFO 2025-06-26 10:44:26,687 calibrate.py _nudge_pos():1868 [1] Points in final series = 126225 WARNING 2025-06-26 10:44:31,099 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:44:32,030 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:44:32,988 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:44:33,757 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:44:33,759 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.203.02/ctd1.nc INFO 2025-06-26 10:44:33,761 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:44:33,761 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:44:33,761 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:44:34,667 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:44:35,438 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:44:35,440 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.203.02/ctd2.nc INFO 2025-06-26 10:44:35,441 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:44:35,442 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:44:35,442 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:44:35,480 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:44:36,702 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [367440 479340 506100 506101 506102 506103 506104 506105 506106 506107 506108 506109 629760 629761 750180 752700 862080 862860] INFO 2025-06-26 10:44:36,938 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:44:36,944 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:44:36,945 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.203.02 ERROR 2025-06-26 10:44:36,945 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.203.02 INFO 2025-06-26 10:44:37,045 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_cal.nc INFO 2025-06-26 10:44:37,152 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:44:37,157 process.py align():251 [1] Alignment steps for 2005.203.02 INFO 2025-06-26 10:44:37,187 align.py process_cal():139 [1] Processing dorado_2005.203.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.203.02 INFO 2025-06-26 10:44:37,225 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:37,229 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:37,320 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:37,326 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:37,413 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:37,418 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:37,471 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:44:37,471 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:44:37,506 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:37,512 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:37,597 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:37,602 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:37,688 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:37,695 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:37,771 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:37,776 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:37,851 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:37,856 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:37,935 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:37,940 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,019 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,024 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,101 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,105 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,182 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,187 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,265 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,270 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,346 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,351 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,428 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,432 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,509 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,514 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,590 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,594 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,671 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,676 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,753 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,758 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,835 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,841 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:38,917 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:38,922 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:39,001 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:39,007 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:39,084 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:39,089 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:39,165 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.203.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:39,169 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:39,278 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:39,345 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:39,411 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:39,478 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:44:39,552 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:39,611 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_align.nc INFO 2025-06-26 10:44:39,700 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:44:39,703 process.py resample():273 [1] Resampling steps for 2005.203.02 INFO 2025-06-26 10:44:39,703 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:44:39,731 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_align.nc mission netCDF file INFO 2025-06-26 10:44:39,738 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_align.nc mission netCDF file INFO 2025-06-26 10:44:39,740 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-22T04:25:08.349055744 to 2005-07-22T11:25:53.129669632 (0 days 00:00:00.009999488 before mission_end) INFO 2025-06-26 10:44:39,742 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-22T04:24:51.540207104 to 2005-07-22T11:25:53.139669120 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:44:39,743 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-22T04:25:13.848678784 to 2005-07-22T11:25:52.999678592 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 10:44:39,745 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-22T04:25:14.118660480 to 2005-07-22T11:25:53.009677824 (0 days 00:00:00.129991296 before mission_end) INFO 2025-06-26 10:44:39,747 resample.py get_mission_start_end():1145 [1] isus : 2005-07-22T04:26:16.994353024 to 2005-07-22T11:25:52.479714432 (0 days 00:00:00.659954688 before mission_end) INFO 2025-06-26 10:44:39,748 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-22T04:24:45.770568192 to 2005-07-22T11:25:52.069708160 (0 days 00:00:01.069960960 before mission_end) INFO 2025-06-26 10:44:39,750 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-22T04:24:46.440556544 to 2005-07-22T11:25:53.009677824 (0 days 00:00:00.129991296 before mission_end) INFO 2025-06-26 10:44:39,751 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_align.nc mission netCDF file INFO 2025-06-26 10:44:39,751 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,028 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,077 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,124 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,174 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,217 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,258 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,299 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,340 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,378 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,420 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,457 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,494 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,531 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,567 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,603 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,639 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,679 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,717 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,756 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,794 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,832 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,870 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,888 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,904 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,918 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,936 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:40,980 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:41,222 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_1S.nc INFO 2025-06-26 10:44:42,333 create_products.py gulper_odv():401 [1] No gulper times found for 2005.203.02 INFO 2025-06-26 10:44:42,333 process.py archive():337 [1] Archiving steps for 2005.203.02 INFO 2025-06-26 10:44:42,333 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:44:42,335 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:44:42,335 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.203.02_1S.nc INFO 2025-06-26 10:44:42,360 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:42,361 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.203.02_cal.nc INFO 2025-06-26 10:44:42,487 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:42,488 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.203.02_align.nc INFO 2025-06-26 10:44:42,595 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:42,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,662 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,673 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,697 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,783 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,796 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,837 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,865 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,942 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005203/2005.203.02 done. INFO 2025-06-26 10:44:42,942 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:44:42,942 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.203.02/dorado_2005.203.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf