INFO 2025-06-26 10:43:43,986 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:43:43,986 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/26/05 - ctdToUse = ctd1 INFO 2025-06-26 10:43:43,986 process.py process_mission():449 [1] Processing AUVCTD mission 2005.201.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:43:43,987 process.py download_process():165 [1] Download and processing steps for 2005.201.00 INFO 2025-06-26 10:43:43,987 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005201/2005.201.00 INFO 2025-06-26 10:43:43,987 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005201/2005.201.00 to /data/auv_data/dorado/missionlogs/2005.201.00 INFO 2025-06-26 10:43:44,538 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.201.00 INFO 2025-06-26 10:43:44,538 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/ctdDriver.log (6100555 bytes) INFO 2025-06-26 10:43:44,999 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/ctdDriver2.log (6100549 bytes) INFO 2025-06-26 10:43:45,442 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/gps.log (48668 bytes) INFO 2025-06-26 10:43:45,456 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/hydroscatlog.log (4163474 bytes) INFO 2025-06-26 10:43:45,953 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/navigation.log (20457786 bytes) INFO 2025-06-26 10:43:47,431 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/isuslog.log (373557 bytes) INFO 2025-06-26 10:43:47,472 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/parosci.log (8923814 bytes) INFO 2025-06-26 10:43:48,218 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/tailCone.log (4165915 bytes) INFO 2025-06-26 10:43:48,724 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.201.00/biolume.log (4724508 bytes) INFO 2025-06-26 10:43:49,172 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:43:49,410 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.87 seconds WARNING 2025-06-26 10:43:49,411 process.py download_process():196 [1] No lopc.bin file for 2005.201.00 INFO 2025-06-26 10:43:49,411 process.py calibrate():227 [1] Calibration steps for 2005.201.00 INFO 2025-06-26 10:43:49,573 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:43:49,575 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:43:51,172 calibrate.py _nudge_pos():1806 [1] 180: 0.170 0.0042069 -0.0028507 12025 40.08 15.589 -13.180 2005-07-20T16:47:24.355741056 INFO 2025-06-26 10:43:51,953 calibrate.py _nudge_pos():1806 [1] 251: 0.160 0.0047347 -0.0027679 12010 40.03 17.565 -12.813 2005-07-20T17:28:36.356397440 INFO 2025-06-26 10:43:52,614 calibrate.py _nudge_pos():1806 [1] 319: 0.160 0.0033685 -0.0027603 11980 39.93 12.527 -12.809 2005-07-20T18:09:39.357670272 INFO 2025-06-26 10:43:53,345 calibrate.py _nudge_pos():1806 [1] 390: 0.150 0.0030767 -0.0014397 11935 39.78 11.483 -6.706 2005-07-20T18:50:36.359354240 INFO 2025-06-26 10:43:54,020 calibrate.py _nudge_pos():1806 [1] 458: 0.170 0.0029434 -0.0006024 12115 40.38 10.821 -2.765 2005-07-20T19:32:06.358777472 INFO 2025-06-26 10:43:54,692 calibrate.py _nudge_pos():1806 [1] 527: 0.170 0.0031769 -0.0002770 12020 40.06 11.771 -1.281 2005-07-20T20:13:18.359433856 INFO 2025-06-26 10:43:55,385 calibrate.py _nudge_pos():1806 [1] 598: 0.160 0.0022179 0.0002860 8530 28.43 11.579 1.864 2005-07-20T20:42:54.357769728 INFO 2025-06-26 10:43:55,895 calibrate.py _nudge_pos():1806 [1] 650: 0.170 -0.0000341 0.0001404 2895 9.65 -0.524 2.696 2005-07-20T20:53:24.354611840 INFO 2025-06-26 10:43:56,028 calibrate.py _nudge_pos():1862 [1] 642: - - - 5 0.01 - - INFO 2025-06-26 10:43:56,029 calibrate.py _nudge_pos():1868 [1] Points in final series = 86675 WARNING 2025-06-26 10:43:56,240 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:43:56,884 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:57,547 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:58,071 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:58,073 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.201.00/ctd1.nc INFO 2025-06-26 10:43:58,075 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:43:58,075 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:58,075 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:43:58,696 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:59,218 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:59,220 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.201.00/ctd2.nc INFO 2025-06-26 10:43:59,221 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:43:59,222 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:59,222 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:43:59,250 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:44:00,071 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 67560 70080 88800 115560 115980 116820 119400 120900 138960 158880 271140 381720 457680 482160 494820 536520 541140 541800 583500 620880 649440 652320 654360 683460 732300 791460 795480 806100 806880] INFO 2025-06-26 10:44:00,235 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:44:00,240 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:44:00,241 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.201.00 ERROR 2025-06-26 10:44:00,241 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.201.00 INFO 2025-06-26 10:44:00,310 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_cal.nc INFO 2025-06-26 10:44:00,398 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:44:00,403 process.py align():251 [1] Alignment steps for 2005.201.00 INFO 2025-06-26 10:44:00,431 align.py process_cal():139 [1] Processing dorado_2005.201.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.201.00 INFO 2025-06-26 10:44:00,457 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:00,461 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:00,526 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:00,531 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:00,593 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:00,597 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:00,636 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:44:00,636 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:44:00,661 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:44:00,666 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:00,728 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:00,732 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:00,789 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:00,793 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:00,853 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:44:00,857 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:00,912 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:00,917 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:00,973 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:00,976 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,033 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,039 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,094 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,098 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,153 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,157 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,213 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,217 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,273 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,277 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,333 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,337 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,393 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,397 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,453 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,456 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,513 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,517 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,573 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,577 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,634 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,639 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,695 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,699 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,757 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,762 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,818 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,822 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,880 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.201.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:44:01,884 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:44:01,955 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:02,005 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:02,058 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:44:02,111 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:44:02,166 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:44:02,211 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_align.nc INFO 2025-06-26 10:44:02,287 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:44:02,290 process.py resample():273 [1] Resampling steps for 2005.201.00 INFO 2025-06-26 10:44:02,290 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:44:02,316 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_align.nc mission netCDF file INFO 2025-06-26 10:44:02,322 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_align.nc mission netCDF file INFO 2025-06-26 10:44:02,324 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-20T16:04:43.191192832 to 2005-07-20T20:53:38.353652992 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:44:02,325 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-20T16:04:25.932375168 to 2005-07-20T20:53:38.183664512 (0 days 00:00:00.199986304 before mission_end) INFO 2025-06-26 10:44:02,327 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-20T16:04:49.810739456 to 2005-07-20T20:53:38.383650816 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:44:02,329 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-20T16:04:49.730744832 to 2005-07-20T20:53:38.323654912 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:44:02,330 resample.py get_mission_start_end():1145 [1] isus : 2005-07-20T16:05:45.846900736 to 2005-07-20T20:53:38.153666688 (0 days 00:00:00.229984128 before mission_end) INFO 2025-06-26 10:44:02,332 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-20T16:04:21.072673792 to 2005-07-20T20:53:37.203697408 (0 days 00:00:01.179953408 before mission_end) INFO 2025-06-26 10:44:02,333 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-20T16:04:21.382686848 to 2005-07-20T20:53:38.333654400 (0 days 00:00:00.049996416 before mission_end) INFO 2025-06-26 10:44:02,334 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_align.nc mission netCDF file INFO 2025-06-26 10:44:02,334 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,532 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,567 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,600 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,633 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,663 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,693 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,724 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,754 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,782 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,808 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,835 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,862 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,890 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,917 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,944 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:02,971 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,001 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,030 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,058 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,085 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,113 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,141 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,156 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,169 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,182 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,196 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,230 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:44:03,423 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_1S.nc INFO 2025-06-26 10:44:04,358 create_products.py gulper_odv():401 [1] No gulper times found for 2005.201.00 INFO 2025-06-26 10:44:04,358 process.py archive():337 [1] Archiving steps for 2005.201.00 INFO 2025-06-26 10:44:04,358 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:44:04,359 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:44:04,360 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.201.00_1S.nc INFO 2025-06-26 10:44:04,377 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:04,378 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.201.00_cal.nc INFO 2025-06-26 10:44:04,462 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:04,463 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.201.00_align.nc INFO 2025-06-26 10:44:04,539 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:44:04,562 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,581 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,586 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,658 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,664 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,689 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,707 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,754 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005201/2005.201.00 done. INFO 2025-06-26 10:44:04,754 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:44:04,754 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.201.00/dorado_2005.201.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf