INFO 2025-06-26 10:43:33,234 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:43:33,234 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/26/05: 196.01 had battery failure - do not include in survey - ctdToUse = ctd1 INFO 2025-06-26 10:43:33,235 process.py process_mission():449 [1] Processing BIOLUME mission 2005.196.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:43:33,235 process.py download_process():165 [1] Download and processing steps for 2005.196.00 INFO 2025-06-26 10:43:33,235 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005196/2005.196.00 INFO 2025-06-26 10:43:33,235 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005196/2005.196.00 to /data/auv_data/dorado/missionlogs/2005.196.00 INFO 2025-06-26 10:43:33,490 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.196.00 INFO 2025-06-26 10:43:33,490 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/ctdDriver.log (2187107 bytes) INFO 2025-06-26 10:43:33,652 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/ctdDriver2.log (2187189 bytes) INFO 2025-06-26 10:43:33,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/gps.log (36572 bytes) INFO 2025-06-26 10:43:33,830 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/hydroscatlog.log (1496714 bytes) INFO 2025-06-26 10:43:34,013 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/navigation.log (7339726 bytes) INFO 2025-06-26 10:43:34,538 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/isuslog.log (132981 bytes) INFO 2025-06-26 10:43:34,555 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/parosci.log (3200534 bytes) INFO 2025-06-26 10:43:34,822 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/tailCone.log (1497931 bytes) INFO 2025-06-26 10:43:35,010 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.196.00/biolume.log (1700412 bytes) INFO 2025-06-26 10:43:35,179 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:43:35,271 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.78 seconds WARNING 2025-06-26 10:43:35,272 process.py download_process():196 [1] No lopc.bin file for 2005.196.00 INFO 2025-06-26 10:43:35,272 process.py calibrate():227 [1] Calibration steps for 2005.196.00 INFO 2025-06-26 10:43:35,369 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:43:35,371 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:43:36,911 calibrate.py _nudge_pos():1806 [1] 180: 0.140 -0.0000656 0.0000278 875 2.91 -3.336 1.766 2005-07-15T03:41:19.037861120 INFO 2025-06-26 10:43:37,793 calibrate.py _nudge_pos():1806 [1] 275: 0.150 -0.0008007 0.0003571 9430 31.43 -3.775 2.105 2005-07-15T04:14:19.032222208 INFO 2025-06-26 10:43:38,346 calibrate.py _nudge_pos():1806 [1] 334: 0.150 -0.0007930 0.0003393 9970 33.23 -3.537 1.892 2005-07-15T04:48:31.031650816 INFO 2025-06-26 10:43:38,896 calibrate.py _nudge_pos():1806 [1] 393: 0.150 -0.0009556 0.0001582 8470 28.23 -5.019 1.038 2005-07-15T05:17:43.031630464 INFO 2025-06-26 10:43:39,860 calibrate.py _nudge_pos():1862 [1] 475: - - - 1 0.00 - - INFO 2025-06-26 10:43:39,860 calibrate.py _nudge_pos():1868 [1] Points in final series = 31091 WARNING 2025-06-26 10:43:39,914 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:43:40,158 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:40,422 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:43:40,609 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:43:40,610 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.196.00/ctd1.nc INFO 2025-06-26 10:43:40,611 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:43:40,612 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:40,612 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:43:40,842 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:43:41,034 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:43:41,036 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.196.00/ctd2.nc INFO 2025-06-26 10:43:41,037 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:43:41,037 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:41,037 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:43:41,052 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:43:41,315 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 29940 30300 35040 35400 35580 75900 103680 104400 143100 144180 144540 144780 150060 187320 190740 190920 258060 259800 259980 262440 262980 301920 305700 306480 370200 370380 370560 370740 371100 371280] INFO 2025-06-26 10:43:41,372 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:43:41,377 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:43:41,377 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.196.00 ERROR 2025-06-26 10:43:41,378 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.196.00 INFO 2025-06-26 10:43:41,405 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_cal.nc INFO 2025-06-26 10:43:41,463 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:43:41,467 process.py align():251 [1] Alignment steps for 2005.196.00 INFO 2025-06-26 10:43:41,492 align.py process_cal():139 [1] Processing dorado_2005.196.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.196.00 INFO 2025-06-26 10:43:41,505 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:41,507 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:41,536 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:41,538 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:41,566 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:41,569 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:41,585 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:43:41,585 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:43:41,596 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:41,599 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:41,626 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:41,628 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,654 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:41,656 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,681 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:41,684 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,709 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,711 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,737 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,740 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,766 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,768 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,794 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,797 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,822 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,824 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,850 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,852 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,878 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,880 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,906 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,908 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,934 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,936 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,962 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,965 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:41,991 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:41,993 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,020 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,023 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,049 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,052 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,078 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,081 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,106 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,109 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,135 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,137 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,163 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.196.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:42,166 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:42,198 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:42,223 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:42,249 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:42,277 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:43:42,304 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:42,327 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_align.nc INFO 2025-06-26 10:43:42,383 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:43:42,385 process.py resample():273 [1] Resampling steps for 2005.196.00 INFO 2025-06-26 10:43:42,386 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:43:42,411 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_align.nc mission netCDF file INFO 2025-06-26 10:43:42,416 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_align.nc mission netCDF file INFO 2025-06-26 10:43:42,417 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-15T03:35:47.050603904 to 2005-07-15T05:19:25.234629120 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:43:42,418 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-15T03:35:30.061767552 to 2005-07-15T05:19:25.154634496 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 10:43:42,420 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-15T03:35:54.120119552 to 2005-07-15T05:19:25.204631040 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:43:42,421 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-15T03:35:53.870136704 to 2005-07-15T05:19:25.204631040 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:43:42,422 resample.py get_mission_start_end():1145 [1] isus : 2005-07-15T03:36:50.146281472 to 2005-07-15T05:19:24.694666112 (0 days 00:00:00.539963008 before mission_end) INFO 2025-06-26 10:43:42,424 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-15T03:35:24.992080640 to 2005-07-15T05:19:24.324657152 (0 days 00:00:00.909971968 before mission_end) INFO 2025-06-26 10:43:42,425 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-15T03:35:25.272095744 to 2005-07-15T05:19:25.114637312 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:43:42,426 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_align.nc mission netCDF file INFO 2025-06-26 10:43:42,426 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,518 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,536 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,553 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,570 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,586 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,602 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,618 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,634 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,648 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,662 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,676 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,690 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,704 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,718 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,732 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,746 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,763 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,778 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,794 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,809 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,825 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,840 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,851 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,861 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,871 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,882 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:42,899 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:43,029 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_1S.nc INFO 2025-06-26 10:43:43,752 create_products.py gulper_odv():401 [1] No gulper times found for 2005.196.00 INFO 2025-06-26 10:43:43,752 process.py archive():337 [1] Archiving steps for 2005.196.00 INFO 2025-06-26 10:43:43,752 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:43:43,753 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:43:43,755 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.196.00_1S.nc INFO 2025-06-26 10:43:43,768 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:43,769 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.196.00_cal.nc INFO 2025-06-26 10:43:43,803 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:43,804 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.196.00_align.nc INFO 2025-06-26 10:43:43,837 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:43,851 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,863 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,868 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,878 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,906 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,912 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,926 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,939 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,963 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005196/2005.196.00 done. INFO 2025-06-26 10:43:43,963 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:43:43,963 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.196.00/dorado_2005.196.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf