INFO 2025-06-26 10:43:01,638 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:43:01,638 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/8/05 - ctdToUse = ctd1 INFO 2025-06-26 10:43:01,638 process.py process_mission():449 [1] Processing BIOLUME mission 2005.182.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:43:01,638 process.py download_process():165 [1] Download and processing steps for 2005.182.02 INFO 2025-06-26 10:43:01,638 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005182/2005.182.02 INFO 2025-06-26 10:43:01,638 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005182/2005.182.02 to /data/auv_data/dorado/missionlogs/2005.182.02 INFO 2025-06-26 10:43:01,916 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.182.02 INFO 2025-06-26 10:43:01,916 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/ctdDriver.log (2434211 bytes) INFO 2025-06-26 10:43:02,099 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/ctdDriver2.log (2434205 bytes) INFO 2025-06-26 10:43:02,280 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/gps.log (27140 bytes) INFO 2025-06-26 10:43:02,292 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/hydroscatlog.log (1664654 bytes) INFO 2025-06-26 10:43:02,503 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/navigation.log (8167378 bytes) INFO 2025-06-26 10:43:03,095 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/isuslog.log (148053 bytes) INFO 2025-06-26 10:43:03,115 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/parosci.log (3563654 bytes) INFO 2025-06-26 10:43:03,420 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/tailCone.log (1666075 bytes) INFO 2025-06-26 10:43:03,630 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.02/biolume.log (1891084 bytes) INFO 2025-06-26 10:43:03,819 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:43:03,921 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.00 seconds WARNING 2025-06-26 10:43:03,922 process.py download_process():196 [1] No lopc.bin file for 2005.182.02 INFO 2025-06-26 10:43:03,922 process.py calibrate():227 [1] Calibration steps for 2005.182.02 INFO 2025-06-26 10:43:04,024 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:43:04,026 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:43:04,556 calibrate.py _nudge_pos():1806 [1] 73: 0.040 -0.0001856 -0.0003021 7695 25.65 -1.075 -2.183 2005-07-01T09:42:07.093011328 INFO 2025-06-26 10:43:05,072 calibrate.py _nudge_pos():1806 [1] 125: 0.040 -0.0003024 -0.0003483 10215 34.05 -1.320 -1.896 2005-07-01T10:17:01.099561984 INFO 2025-06-26 10:43:05,681 calibrate.py _nudge_pos():1806 [1] 190: 0.030 -0.0002607 -0.0002179 9820 32.73 -1.185 -1.234 2005-07-01T10:50:49.100634368 INFO 2025-06-26 10:43:06,371 calibrate.py _nudge_pos():1806 [1] 262: 0.040 -0.0000666 -0.0000856 2435 8.11 -1.220 -1.956 2005-07-01T11:00:07.092409344 INFO 2025-06-26 10:43:06,870 calibrate.py _nudge_pos():1806 [1] 314: 0.030 -0.0000942 -0.0000716 2745 9.15 -1.531 -1.451 2005-07-01T11:10:07.101305984 INFO 2025-06-26 10:43:07,357 calibrate.py _nudge_pos():1862 [1] 344: - - - 2 0.00 - - INFO 2025-06-26 10:43:07,357 calibrate.py _nudge_pos():1868 [1] Points in final series = 34599 WARNING 2025-06-26 10:43:07,417 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:43:07,684 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:43:07,961 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:08,171 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:08,173 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.182.02/ctd1.nc INFO 2025-06-26 10:43:08,174 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:43:08,174 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:08,174 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:43:08,431 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:08,638 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:43:08,640 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.182.02/ctd2.nc INFO 2025-06-26 10:43:08,641 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:43:08,642 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:43:08,642 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:43:08,657 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:43:09,020 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:43:09,025 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:43:09,026 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.182.02 ERROR 2025-06-26 10:43:09,026 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.182.02 INFO 2025-06-26 10:43:09,056 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_cal.nc INFO 2025-06-26 10:43:09,116 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:43:09,120 process.py align():251 [1] Alignment steps for 2005.182.02 INFO 2025-06-26 10:43:09,145 align.py process_cal():139 [1] Processing dorado_2005.182.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.182.02 INFO 2025-06-26 10:43:09,159 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:09,161 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:09,192 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:09,194 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:09,224 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:09,227 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:09,244 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:43:09,244 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:43:09,256 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:43:09,259 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:09,288 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:09,290 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,318 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:09,320 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,347 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:43:09,350 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,376 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,379 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,406 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,408 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,435 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,438 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,465 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,468 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,495 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,498 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,530 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,533 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,568 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,571 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,598 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,601 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,628 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,630 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,658 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,660 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,687 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,690 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,718 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,721 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,748 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,751 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,778 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,781 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,808 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,811 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,841 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,844 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,876 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:43:09,878 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:43:09,914 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:09,941 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:09,968 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:43:09,996 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:43:10,028 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:43:10,052 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_align.nc INFO 2025-06-26 10:43:10,107 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:43:10,110 process.py resample():273 [1] Resampling steps for 2005.182.02 INFO 2025-06-26 10:43:10,110 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:43:10,134 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_align.nc mission netCDF file INFO 2025-06-26 10:43:10,139 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_align.nc mission netCDF file INFO 2025-06-26 10:43:10,140 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-01T09:15:37.921876864 to 2005-07-01T11:10:57.497853568 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 10:43:10,141 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-01T09:15:21.942971648 to 2005-07-01T11:10:57.547850112 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:43:10,142 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-01T09:15:44.381434496 to 2005-07-01T11:10:57.467855744 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 10:43:10,144 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-01T09:15:44.361435904 to 2005-07-01T11:10:57.437857664 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:43:10,145 resample.py get_mission_start_end():1145 [1] isus : 2005-07-01T09:16:45.147271680 to 2005-07-01T11:10:56.717906944 (0 days 00:00:00.829943168 before mission_end) INFO 2025-06-26 10:43:10,147 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-01T09:15:16.153333888 to 2005-07-01T11:10:56.397894656 (0 days 00:00:01.149955456 before mission_end) INFO 2025-06-26 10:43:10,148 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-01T09:15:17.133300992 to 2005-07-01T11:10:57.517852032 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:43:10,148 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_align.nc mission netCDF file INFO 2025-06-26 10:43:10,149 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,243 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,261 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,279 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,297 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,314 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,330 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,346 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,362 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,377 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,391 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,406 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,421 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,435 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,449 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,464 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,478 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,494 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,510 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,526 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,542 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,558 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,573 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,584 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,594 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,604 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,615 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,633 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:10,765 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_1S.nc INFO 2025-06-26 10:43:11,515 create_products.py gulper_odv():401 [1] No gulper times found for 2005.182.02 INFO 2025-06-26 10:43:11,515 process.py archive():337 [1] Archiving steps for 2005.182.02 INFO 2025-06-26 10:43:11,515 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:43:11,515 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:43:11,516 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.02_1S.nc INFO 2025-06-26 10:43:11,529 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:11,530 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.02_cal.nc INFO 2025-06-26 10:43:11,565 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:11,566 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.02_align.nc INFO 2025-06-26 10:43:11,599 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:11,612 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,625 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,629 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,639 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,667 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,687 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,699 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,723 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.02 done. INFO 2025-06-26 10:43:11,723 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:43:11,723 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.02/dorado_2005.182.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf