INFO 2025-06-26 10:42:38,961 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:42:38,961 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/8/05 - ctdToUse = ctd1 INFO 2025-06-26 10:42:38,961 process.py process_mission():449 [1] Processing BIOLUME mission 2005.182.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:42:38,961 process.py download_process():165 [1] Download and processing steps for 2005.182.01 INFO 2025-06-26 10:42:38,961 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005182/2005.182.01 INFO 2025-06-26 10:42:38,962 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005182/2005.182.01 to /data/auv_data/dorado/missionlogs/2005.182.01 INFO 2025-06-26 10:42:39,543 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.182.01 INFO 2025-06-26 10:42:39,544 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/ctdDriver.log (6617643 bytes) INFO 2025-06-26 10:42:40,046 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/ctdDriver2.log (6617637 bytes) INFO 2025-06-26 10:42:40,554 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/gps.log (54500 bytes) INFO 2025-06-26 10:42:40,568 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/hydroscatlog.log (4515974 bytes) INFO 2025-06-26 10:42:41,104 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/navigation.log (22190262 bytes) INFO 2025-06-26 10:42:42,715 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/isuslog.log (404117 bytes) INFO 2025-06-26 10:42:42,758 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/parosci.log (9666326 bytes) INFO 2025-06-26 10:42:43,572 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/tailCone.log (4518427 bytes) INFO 2025-06-26 10:42:44,136 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.182.01/biolume.log (5124076 bytes) INFO 2025-06-26 10:42:44,634 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:42:44,896 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.35 seconds WARNING 2025-06-26 10:42:44,897 process.py download_process():196 [1] No lopc.bin file for 2005.182.01 INFO 2025-06-26 10:42:44,897 process.py calibrate():227 [1] Calibration steps for 2005.182.01 INFO 2025-06-26 10:42:45,068 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:42:45,070 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:42:46,098 calibrate.py _nudge_pos():1806 [1] 124: 0.050 -0.0010698 0.0004444 9415 31.38 -5.052 2.624 2005-07-01T04:29:49.066653952 INFO 2025-06-26 10:42:46,874 calibrate.py _nudge_pos():1806 [1] 203: 0.060 -0.0013732 0.0004598 10055 33.51 -6.074 2.542 2005-07-01T05:04:38.063547904 INFO 2025-06-26 10:42:47,606 calibrate.py _nudge_pos():1806 [1] 280: 0.050 -0.0023978 0.0002962 10325 34.41 -10.332 1.595 2005-07-01T05:40:19.066879232 INFO 2025-06-26 10:42:48,168 calibrate.py _nudge_pos():1806 [1] 338: 0.050 -0.0033780 -0.0001391 10995 36.65 -13.673 -0.703 2005-07-01T06:17:55.072332160 INFO 2025-06-26 10:42:48,814 calibrate.py _nudge_pos():1806 [1] 404: 0.050 -0.0027387 0.0007176 10055 33.51 -12.127 3.967 2005-07-01T06:52:31.070116480 INFO 2025-06-26 10:42:49,474 calibrate.py _nudge_pos():1806 [1] 472: 0.070 -0.0045230 0.0018762 11155 37.18 -18.058 9.351 2005-07-01T07:30:49.062693376 INFO 2025-06-26 10:42:50,027 calibrate.py _nudge_pos():1806 [1] 529: 0.070 -0.0014231 0.0006290 4640 15.46 -13.663 7.538 2005-07-01T07:47:13.065284480 INFO 2025-06-26 10:42:50,536 calibrate.py _nudge_pos():1806 [1] 580: 0.060 0.0001277 0.0003309 10820 36.06 0.526 1.700 2005-07-01T08:24:07.063615360 INFO 2025-06-26 10:42:51,104 calibrate.py _nudge_pos():1806 [1] 637: 0.070 0.0001867 -0.0005842 10550 35.16 0.789 -3.079 2005-07-01T09:00:13.065233920 INFO 2025-06-26 10:42:51,617 calibrate.py _nudge_pos():1806 [1] 689: 0.060 -0.0000783 -0.0001338 2445 8.15 -1.428 -3.043 2005-07-01T09:09:13.068241408 INFO 2025-06-26 10:42:52,170 calibrate.py _nudge_pos():1862 [1] 723: - - - 4 0.01 - - INFO 2025-06-26 10:42:52,170 calibrate.py _nudge_pos():1868 [1] Points in final series = 94016 WARNING 2025-06-26 10:42:52,393 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:42:53,095 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:42:53,809 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:54,374 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:54,376 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.182.01/ctd1.nc INFO 2025-06-26 10:42:54,378 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:42:54,378 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:42:54,378 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:42:55,068 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:55,638 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:55,641 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.182.01/ctd2.nc INFO 2025-06-26 10:42:55,642 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:42:55,643 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:42:55,643 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:42:55,673 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:42:56,549 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 195720 197100 198660 198840 199560 311280 421980 422580 966900] INFO 2025-06-26 10:42:56,720 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:42:56,725 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:42:56,726 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.182.01 ERROR 2025-06-26 10:42:56,726 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.182.01 INFO 2025-06-26 10:42:56,800 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_cal.nc INFO 2025-06-26 10:42:56,891 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:42:56,895 process.py align():251 [1] Alignment steps for 2005.182.01 INFO 2025-06-26 10:42:56,924 align.py process_cal():139 [1] Processing dorado_2005.182.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.182.01 INFO 2025-06-26 10:42:56,953 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:56,957 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:57,028 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:57,033 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:57,101 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:57,106 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:57,148 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:42:57,148 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:42:57,177 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:57,182 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:57,249 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:57,253 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,314 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:57,318 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,379 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:57,383 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,445 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,449 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,511 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,515 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,576 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,581 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,643 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,647 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,714 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,719 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,781 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,786 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,846 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,851 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,913 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,918 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:57,980 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:57,984 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,046 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,050 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,112 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,116 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,177 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,181 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,244 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,249 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,311 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,317 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,378 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,383 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,445 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,450 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,511 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.182.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:58,515 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:58,592 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:42:58,649 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:42:58,705 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:42:58,762 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:42:58,822 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:58,873 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_align.nc INFO 2025-06-26 10:42:58,953 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:42:58,956 process.py resample():273 [1] Resampling steps for 2005.182.01 INFO 2025-06-26 10:42:58,956 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:42:58,982 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_align.nc mission netCDF file INFO 2025-06-26 10:42:58,988 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_align.nc mission netCDF file INFO 2025-06-26 10:42:58,990 resample.py get_mission_start_end():1145 [1] navigation: 2005-07-01T03:56:45.482538880 to 2005-07-01T09:10:08.864418944 (0 days 00:00:00.109992576 before mission_end) INFO 2025-06-26 10:42:58,991 resample.py get_mission_start_end():1145 [1] hs2 : 2005-07-01T03:56:27.703756800 to 2005-07-01T09:10:08.974411520 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:42:58,993 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-07-01T03:56:51.302140288 to 2005-07-01T09:10:08.854419712 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:42:58,995 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-07-01T03:56:51.272142208 to 2005-07-01T09:10:08.824421632 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 10:42:58,996 resample.py get_mission_start_end():1145 [1] isus : 2005-07-01T03:57:52.297961728 to 2005-07-01T09:10:08.174466176 (0 days 00:00:00.799945344 before mission_end) INFO 2025-06-26 10:42:58,997 resample.py get_mission_start_end():1145 [1] biolume : 2005-07-01T03:56:22.954047872 to 2005-07-01T09:10:07.924449152 (0 days 00:00:01.049962368 before mission_end) INFO 2025-06-26 10:42:58,999 resample.py get_mission_start_end():1145 [1] tailcone : 2005-07-01T03:56:23.334056192 to 2005-07-01T09:10:08.924414848 (0 days 00:00:00.049996672 before mission_end) INFO 2025-06-26 10:42:59,000 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_align.nc mission netCDF file INFO 2025-06-26 10:42:59,000 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,214 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,252 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,290 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,327 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,361 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,393 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,424 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,456 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,485 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,514 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,543 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,572 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,600 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,628 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,657 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,685 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,718 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,750 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,780 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,810 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,839 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,870 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,885 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,899 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,912 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,928 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:59,963 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:43:00,178 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_1S.nc INFO 2025-06-26 10:43:01,147 create_products.py gulper_odv():401 [1] No gulper times found for 2005.182.01 INFO 2025-06-26 10:43:01,147 process.py archive():337 [1] Archiving steps for 2005.182.01 INFO 2025-06-26 10:43:01,147 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:43:01,147 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:43:01,149 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.01_1S.nc INFO 2025-06-26 10:43:01,168 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:01,169 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.01_cal.nc INFO 2025-06-26 10:43:01,252 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:01,253 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.182.01_align.nc INFO 2025-06-26 10:43:01,342 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:43:01,367 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,391 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,396 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,420 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,489 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,495 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,525 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,546 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,603 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005182/2005.182.01 done. INFO 2025-06-26 10:43:01,603 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:43:01,604 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.182.01/dorado_2005.182.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf