INFO 2025-06-26 10:41:57,558 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:41:57,558 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Portaled 7/8/05 - ctdToUse = ctd1 INFO 2025-06-26 10:41:57,558 process.py process_mission():449 [1] Processing AUVCTD mission 2005.179.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:41:57,558 process.py download_process():165 [1] Download and processing steps for 2005.179.01 INFO 2025-06-26 10:41:57,558 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005179/2005.179.01 INFO 2025-06-26 10:41:57,559 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005179/2005.179.01 to /data/auv_data/dorado/missionlogs/2005.179.01 INFO 2025-06-26 10:41:58,146 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.179.01 INFO 2025-06-26 10:41:58,146 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/ctdDriver.log (6315451 bytes) INFO 2025-06-26 10:41:58,602 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/ctdDriver2.log (6315181 bytes) INFO 2025-06-26 10:41:59,062 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/gps.log (50180 bytes) INFO 2025-06-26 10:41:59,075 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/hydroscatlog.log (4309934 bytes) INFO 2025-06-26 10:41:59,583 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/navigation.log (21175462 bytes) INFO 2025-06-26 10:42:01,081 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/isuslog.log (387573 bytes) INFO 2025-06-26 10:42:01,122 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.179.01/isuslog.log: [2 4 5 6 8] INFO 2025-06-26 10:42:01,123 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/parosci.log (9240566 bytes) INFO 2025-06-26 10:42:01,877 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.179.01/parosci.log: [13840 13842 13843 55952 55953 55954] INFO 2025-06-26 10:42:01,902 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/tailCone.log (4312267 bytes) INFO 2025-06-26 10:42:02,443 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.179.01/biolume.log (4890700 bytes) INFO 2025-06-26 10:42:02,910 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:42:03,159 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.01 seconds WARNING 2025-06-26 10:42:03,159 process.py download_process():196 [1] No lopc.bin file for 2005.179.01 INFO 2025-06-26 10:42:03,160 process.py calibrate():227 [1] Calibration steps for 2005.179.01 INFO 2025-06-26 10:42:03,324 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:42:03,326 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:42:04,867 calibrate.py _nudge_pos():1806 [1] 180: 0.050 -0.0001902 -0.0003033 11923 39.75 -0.711 -1.414 2005-06-28T16:55:55.009786624 INFO 2025-06-26 10:42:05,500 calibrate.py _nudge_pos():1806 [1] 246: 0.050 0.0002975 0.0008077 12034 40.11 1.102 3.731 2005-06-28T17:37:07.010443008 INFO 2025-06-26 10:42:06,217 calibrate.py _nudge_pos():1806 [1] 322: 0.060 0.0014564 0.0014688 11990 39.96 5.411 6.811 2005-06-28T18:18:20.011030912 INFO 2025-06-26 10:42:06,849 calibrate.py _nudge_pos():1806 [1] 389: 0.050 0.0034537 0.0008010 11965 39.88 12.858 3.722 2005-06-28T18:59:19.012577792 INFO 2025-06-26 10:42:07,551 calibrate.py _nudge_pos():1806 [1] 462: 0.060 0.0048225 0.0001502 12028 40.10 17.855 0.694 2005-06-28T19:40:37.012823168 INFO 2025-06-26 10:42:08,170 calibrate.py _nudge_pos():1806 [1] 525: 0.060 0.0044934 -0.0004926 11990 39.96 16.691 -2.284 2005-06-28T20:21:37.004302080 INFO 2025-06-26 10:42:08,840 calibrate.py _nudge_pos():1806 [1] 594: 0.050 0.0034960 -0.0004414 12228 40.76 12.730 -2.006 2005-06-28T21:03:31.012080640 INFO 2025-06-26 10:42:09,558 calibrate.py _nudge_pos():1806 [1] 665: 0.060 -0.0000441 0.0000943 2290 7.63 -0.857 2.289 2005-06-28T21:12:19.005910656 INFO 2025-06-26 10:42:09,746 calibrate.py _nudge_pos():1862 [1] 663: - - - 2 0.00 - - INFO 2025-06-26 10:42:09,746 calibrate.py _nudge_pos():1868 [1] Points in final series = 89718 WARNING 2025-06-26 10:42:12,894 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:42:13,559 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:14,257 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:14,804 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:14,806 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.179.01/ctd1.nc INFO 2025-06-26 10:42:14,808 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:42:14,808 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:42:14,808 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:42:15,461 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:15,999 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:42:16,001 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.179.01/ctd2.nc INFO 2025-06-26 10:42:16,003 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:42:16,003 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:42:16,003 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:42:16,602 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:42:17,606 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:42:17,611 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:42:17,612 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.179.01 ERROR 2025-06-26 10:42:17,612 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.179.01 INFO 2025-06-26 10:42:17,683 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_cal.nc INFO 2025-06-26 10:42:17,771 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:42:17,776 process.py align():251 [1] Alignment steps for 2005.179.01 INFO 2025-06-26 10:42:17,803 align.py process_cal():139 [1] Processing dorado_2005.179.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.179.01 INFO 2025-06-26 10:42:17,830 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:17,834 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:17,902 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:17,907 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:17,980 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:17,984 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:18,025 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:42:18,025 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:42:18,052 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:42:18,056 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:18,121 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:18,125 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,183 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:18,187 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,243 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:42:18,247 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,308 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,312 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,371 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,375 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,432 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,436 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,494 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,498 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,556 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,560 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,617 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,621 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,678 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,682 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,739 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,743 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,800 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,804 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,861 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,865 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,922 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,926 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:18,984 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:18,989 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,047 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:19,052 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,110 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:19,115 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,172 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:19,176 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,234 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:19,238 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,298 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.179.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:42:19,302 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:42:19,374 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:42:19,426 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:42:19,479 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:42:19,533 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:42:19,590 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:42:19,635 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_align.nc INFO 2025-06-26 10:42:19,711 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:42:19,713 process.py resample():273 [1] Resampling steps for 2005.179.01 INFO 2025-06-26 10:42:19,714 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:42:19,741 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_align.nc mission netCDF file INFO 2025-06-26 10:42:19,747 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_align.nc mission netCDF file INFO 2025-06-26 10:42:19,748 resample.py get_mission_start_end():1145 [1] navigation: 2005-06-28T16:13:33.623883520 to 2005-06-28T21:12:38.404581760 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:42:19,750 resample.py get_mission_start_end():1145 [1] hs2 : 2005-06-28T16:13:15.635115904 to 2005-06-28T21:12:38.394582528 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:42:19,752 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-06-28T16:13:39.073510144 to 2005-06-28T21:12:38.364584448 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:42:19,753 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-06-28T16:13:39.563476608 to 2005-06-28T21:12:38.364584448 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:42:19,755 resample.py get_mission_start_end():1145 [1] isus : 2005-06-28T16:14:16.960914560 to 2005-06-28T21:12:38.334586624 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:42:19,757 resample.py get_mission_start_end():1145 [1] biolume : 2005-06-28T16:13:10.845409664 to 2005-06-28T21:12:37.914581120 (0 days 00:00:00.509999232 before mission_end) INFO 2025-06-26 10:42:19,758 resample.py get_mission_start_end():1145 [1] tailcone : 2005-06-28T16:13:11.235417088 to 2005-06-28T21:12:38.424580352 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:42:19,759 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_align.nc mission netCDF file INFO 2025-06-26 10:42:19,759 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:19,957 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:19,993 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,032 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,068 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,100 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,130 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,161 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,192 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,220 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,248 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,276 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,304 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,333 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,361 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,389 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,417 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,450 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,482 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,513 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,545 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,576 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,607 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,623 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,638 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,651 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,665 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,699 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:42:20,912 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_1S.nc INFO 2025-06-26 10:42:21,855 create_products.py gulper_odv():401 [1] No gulper times found for 2005.179.01 INFO 2025-06-26 10:42:21,855 process.py archive():337 [1] Archiving steps for 2005.179.01 INFO 2025-06-26 10:42:21,855 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01, BASE_PATH = /data/auv_data INFO 2025-06-26 10:42:21,857 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:42:21,858 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.179.01_1S.nc INFO 2025-06-26 10:42:21,875 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:42:21,876 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.179.01_cal.nc INFO 2025-06-26 10:42:21,962 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:42:21,963 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.179.01_align.nc INFO 2025-06-26 10:42:22,038 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:42:22,061 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,082 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,087 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,103 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,162 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,168 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,195 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,214 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,268 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005179/2005.179.01 done. INFO 2025-06-26 10:42:22,269 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:42:22,269 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.179.01/dorado_2005.179.01_processing.log /Volumes/AUVCTD/surveys/2005/netcdf