INFO 2025-06-26 10:41:21,725 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:41:21,725 process.py process_mission():434 [1] dorado_info[mission]["comment"] = dynamicControl log data has device info. isusLog.cfg has information now. - ctdToUse = ctd1 INFO 2025-06-26 10:41:21,726 process.py process_mission():449 [1] Processing BIOLUME mission 2005.175.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:41:21,726 process.py download_process():165 [1] Download and processing steps for 2005.175.00 INFO 2025-06-26 10:41:21,726 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005175/2005.175.00 INFO 2025-06-26 10:41:21,726 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005175/2005.175.00 to /data/auv_data/dorado/missionlogs/2005.175.00 INFO 2025-06-26 10:41:22,494 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.175.00 INFO 2025-06-26 10:41:22,494 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/ctdDriver.log (8879859 bytes) INFO 2025-06-26 10:41:23,147 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/ctdDriver2.log (8879853 bytes) INFO 2025-06-26 10:41:23,808 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/gps.log (80132 bytes) INFO 2025-06-26 10:41:23,826 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/hydroscatlog.log (6058094 bytes) INFO 2025-06-26 10:41:24,531 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/navigation.log (29769874 bytes) INFO 2025-06-26 10:41:26,657 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/isuslog.log (543637 bytes) INFO 2025-06-26 10:41:26,713 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.175.00/isuslog.log: [1 2 3 4 5 6 7] INFO 2025-06-26 10:41:26,715 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/parosci.log (12964310 bytes) INFO 2025-06-26 10:41:27,793 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.175.00/parosci.log: [ 3281 37264 37265 55888 83813 83814 83816 83817 127504 127505 127507 127508 127510 171195 171196 171197 171198 171199] INFO 2025-06-26 10:41:27,827 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/tailCone.log (6059851 bytes) INFO 2025-06-26 10:41:28,590 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.175.00/biolume.log (6872764 bytes) INFO 2025-06-26 10:41:29,250 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:41:29,593 logs2netcdfs.py download_process_logs():807 [1] Time to process: 7.10 seconds WARNING 2025-06-26 10:41:29,593 process.py download_process():196 [1] No lopc.bin file for 2005.175.00 INFO 2025-06-26 10:41:29,594 process.py calibrate():227 [1] Calibration steps for 2005.175.00 INFO 2025-06-26 10:41:29,798 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:41:29,801 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:41:31,403 calibrate.py _nudge_pos():1806 [1] 183: 0.110 -0.0001413 -0.0000069 1880 6.26 -3.342 -0.205 2005-06-24T03:46:30.130177536 INFO 2025-06-26 10:41:32,301 calibrate.py _nudge_pos():1806 [1] 276: 0.120 -0.0008372 0.0003759 9825 32.76 -3.787 2.126 2005-06-24T04:20:48.129195008 INFO 2025-06-26 10:41:32,803 calibrate.py _nudge_pos():1806 [1] 329: 0.110 -0.0009021 0.0003494 10173 33.93 -3.941 1.908 2005-06-24T04:55:36.136156544 INFO 2025-06-26 10:41:33,442 calibrate.py _nudge_pos():1806 [1] 395: 0.110 -0.0017446 0.0001203 10235 34.11 -7.583 0.653 2005-06-24T05:30:48.131474944 INFO 2025-06-26 10:41:34,033 calibrate.py _nudge_pos():1806 [1] 453: 0.120 -0.0033625 -0.0006429 10965 36.55 -13.648 -3.260 2005-06-24T06:08:18.127339776 INFO 2025-06-26 10:41:34,630 calibrate.py _nudge_pos():1806 [1] 514: 0.110 -0.0029539 -0.0016611 10320 34.40 -12.744 -8.948 2005-06-24T06:43:42.131835520 INFO 2025-06-26 10:41:35,217 calibrate.py _nudge_pos():1806 [1] 574: 0.110 -0.0026690 -0.0013303 9152 30.51 -12.985 -8.079 2005-06-24T07:15:12.132361600 INFO 2025-06-26 10:41:35,758 calibrate.py _nudge_pos():1806 [1] 629: 0.130 -0.0005724 -0.0009523 3750 12.50 -6.800 -14.121 2005-06-24T07:28:36.127284352 INFO 2025-06-26 10:41:36,413 calibrate.py _nudge_pos():1806 [1] 694: 0.130 -0.0002533 -0.0038747 9906 33.03 -1.139 -21.737 2005-06-24T08:02:42.127123584 INFO 2025-06-26 10:41:37,046 calibrate.py _nudge_pos():1806 [1] 758: 0.120 -0.0000592 -0.0021661 9075 30.25 -0.291 -13.270 2005-06-24T08:34:00.128471552 INFO 2025-06-26 10:41:37,789 calibrate.py _nudge_pos():1806 [1] 832: 0.110 -0.0000180 -0.0002510 9745 32.48 -0.083 -1.432 2005-06-24T09:07:42.129955072 INFO 2025-06-26 10:41:38,503 calibrate.py _nudge_pos():1806 [1] 903: 0.120 -0.0002885 -0.0003016 10330 34.43 -1.246 -1.623 2005-06-24T09:43:18.133628800 INFO 2025-06-26 10:41:39,045 calibrate.py _nudge_pos():1806 [1] 956: 0.110 -0.0001755 -0.0001404 9910 33.03 -0.790 -0.788 2005-06-24T10:17:12.134290176 INFO 2025-06-26 10:41:39,583 calibrate.py _nudge_pos():1806 [1] 1009: 0.120 -0.0000790 -0.0000552 2440 8.13 -1.445 -1.259 2005-06-24T10:26:12.127298176 INFO 2025-06-26 10:41:40,305 calibrate.py _nudge_pos():1806 [1] 1077: 0.110 -0.0000349 -0.0000523 3115 10.38 -0.500 -0.933 2005-06-24T10:37:42.130029696 INFO 2025-06-26 10:41:40,544 calibrate.py _nudge_pos():1862 [1] 1079: - - - 2 0.00 - - INFO 2025-06-26 10:41:40,544 calibrate.py _nudge_pos():1868 [1] Points in final series = 126135 WARNING 2025-06-26 10:41:44,993 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:41:45,164 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 2 of 100953 INFO 2025-06-26 10:41:45,948 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 2 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:46,909 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:47,675 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:47,678 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.175.00/ctd1.nc INFO 2025-06-26 10:41:47,679 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:41:47,680 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:41:47,680 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:41:48,580 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:49,360 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:49,362 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.175.00/ctd2.nc INFO 2025-06-26 10:41:49,364 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:41:49,364 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:41:49,364 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:41:50,194 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:41:51,346 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [927000] INFO 2025-06-26 10:41:51,583 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:41:51,589 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:41:51,591 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.175.00 ERROR 2025-06-26 10:41:51,591 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.175.00 INFO 2025-06-26 10:41:51,689 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_cal.nc INFO 2025-06-26 10:41:51,798 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:41:51,802 process.py align():251 [1] Alignment steps for 2005.175.00 INFO 2025-06-26 10:41:51,834 align.py process_cal():139 [1] Processing dorado_2005.175.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.175.00 INFO 2025-06-26 10:41:51,871 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:51,876 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:51,967 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:51,973 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:52,062 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:52,067 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:52,120 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:41:52,121 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:41:52,155 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:52,161 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:52,245 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:52,250 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,326 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:52,331 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,406 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:52,411 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,488 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,493 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,569 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,574 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,649 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,654 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,730 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,735 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,812 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,817 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,895 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,900 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:52,978 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:52,984 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,061 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,066 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,143 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,148 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,224 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,228 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,305 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,310 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,390 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,395 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,472 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,477 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,557 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,562 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,637 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,642 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,718 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,723 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,798 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.175.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:53,802 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:53,912 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:41:54,008 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:41:54,076 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.67 INFO 2025-06-26 10:41:54,145 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:41:54,217 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:54,277 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_align.nc INFO 2025-06-26 10:41:54,375 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:41:54,379 process.py resample():273 [1] Resampling steps for 2005.175.00 INFO 2025-06-26 10:41:54,379 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:41:54,416 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_align.nc mission netCDF file INFO 2025-06-26 10:41:54,425 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_align.nc mission netCDF file INFO 2025-06-26 10:41:54,427 resample.py get_mission_start_end():1145 [1] navigation: 2005-06-24T03:37:34.486871680 to 2005-06-24T10:38:05.528426880 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 10:41:54,430 resample.py get_mission_start_end():1145 [1] hs2 : 2005-06-24T03:37:16.268119552 to 2005-06-24T10:38:05.608421376 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 10:41:54,432 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-06-24T03:37:38.906568704 to 2005-06-24T10:38:05.528426880 (0 days 00:00:00.129991040 before mission_end) INFO 2025-06-26 10:41:54,435 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-06-24T03:37:39.196548992 to 2005-06-24T10:38:05.568424192 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:41:54,437 resample.py get_mission_start_end():1145 [1] isus : 2005-06-24T03:38:14.454133760 to 2005-06-24T10:38:04.888470656 (0 days 00:00:00.769947264 before mission_end) INFO 2025-06-26 10:41:54,439 resample.py get_mission_start_end():1145 [1] biolume : 2005-06-24T03:37:11.478413568 to 2005-06-24T10:38:04.778444032 (0 days 00:00:00.879973888 before mission_end) INFO 2025-06-26 10:41:54,442 resample.py get_mission_start_end():1145 [1] tailcone : 2005-06-24T03:37:12.088406144 to 2005-06-24T10:38:05.658417920 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:41:54,443 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_align.nc mission netCDF file INFO 2025-06-26 10:41:54,444 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,716 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,763 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,807 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,853 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,893 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,934 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:54,974 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,013 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,050 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,086 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,123 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,160 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,196 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,232 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,268 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,304 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,342 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,380 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,418 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,456 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,493 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,530 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,547 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,563 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,577 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,594 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,639 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:55,877 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_1S.nc INFO 2025-06-26 10:41:56,957 create_products.py gulper_odv():401 [1] No gulper times found for 2005.175.00 INFO 2025-06-26 10:41:56,958 process.py archive():337 [1] Archiving steps for 2005.175.00 INFO 2025-06-26 10:41:56,958 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:41:56,958 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:41:56,959 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.175.00_1S.nc INFO 2025-06-26 10:41:56,982 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:56,983 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.175.00_cal.nc INFO 2025-06-26 10:41:57,093 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:57,094 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.175.00_align.nc INFO 2025-06-26 10:41:57,200 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:57,230 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,257 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,262 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,282 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,373 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,380 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,416 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,440 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,513 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005175/2005.175.00 done. INFO 2025-06-26 10:41:57,513 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:41:57,513 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.175.00/dorado_2005.175.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf