INFO 2025-06-26 10:40:40,820 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:40:40,821 process.py process_mission():434 [1] dorado_info[mission]["comment"] = First mission (161.00) failed to make netCDFs by SSDS (??) - ctdToUse = ctd1 INFO 2025-06-26 10:40:40,821 process.py process_mission():449 [1] Processing BIOLUME mission 2005.161.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:40:40,821 process.py download_process():165 [1] Download and processing steps for 2005.161.02 INFO 2025-06-26 10:40:40,821 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005161/2005.161.02 INFO 2025-06-26 10:40:40,821 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005161/2005.161.02 to /data/auv_data/dorado/missionlogs/2005.161.02 INFO 2025-06-26 10:40:41,435 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.161.02 INFO 2025-06-26 10:40:41,435 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/ctdDriver.log (6807547 bytes) INFO 2025-06-26 10:40:41,939 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/ctdDriver2.log (6807629 bytes) INFO 2025-06-26 10:40:42,429 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.161.02/ctdDriver2.log: [20278] INFO 2025-06-26 10:40:42,451 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/gps.log (47444 bytes) INFO 2025-06-26 10:40:42,464 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/hydroscatlog.log (4645094 bytes) INFO 2025-06-26 10:40:43,038 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.161.02/hydroscatlog.log: [59173] INFO 2025-06-26 10:40:43,051 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/navigation.log (22824394 bytes) INFO 2025-06-26 10:40:44,699 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/isuslog.log (417909 bytes) INFO 2025-06-26 10:40:44,747 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/parosci.log (9944054 bytes) INFO 2025-06-26 10:40:45,588 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.161.02/parosci.log: [ 69989 69991 113680 113681 113682 113683] INFO 2025-06-26 10:40:45,615 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/tailCone.log (4647739 bytes) INFO 2025-06-26 10:40:46,204 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.161.02/biolume.log (5270956 bytes) INFO 2025-06-26 10:40:46,712 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:40:46,985 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.55 seconds WARNING 2025-06-26 10:40:46,986 process.py download_process():196 [1] No lopc.bin file for 2005.161.02 INFO 2025-06-26 10:40:46,986 process.py calibrate():227 [1] Calibration steps for 2005.161.02 INFO 2025-06-26 10:40:47,162 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:40:47,164 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:40:47,725 calibrate.py _nudge_pos():1806 [1] 75: 0.110 0.0000155 0.0000025 40 0.13 17.707 3.527 2005-06-10T05:45:19.552728448 INFO 2025-06-26 10:40:47,765 calibrate.py _nudge_pos():1806 [1] 79: 0.110 -0.0030262 -0.0003357 10445 34.83 -12.889 -1.786 2005-06-10T06:20:12.549348352 INFO 2025-06-26 10:40:47,869 calibrate.py _nudge_pos():1806 [1] 90: 0.110 0.0000072 -0.0000125 15 0.05 22.995 -49.503 2005-06-10T06:20:25.548457856 INFO 2025-06-26 10:40:48,335 calibrate.py _nudge_pos():1806 [1] 138: 0.100 -0.0044636 -0.0001544 10949 36.50 -18.149 -0.784 2005-06-10T06:57:42.555212544 INFO 2025-06-26 10:40:48,782 calibrate.py _nudge_pos():1806 [1] 184: 0.110 -0.0049051 -0.0007585 11025 36.75 -19.815 -3.825 2005-06-10T07:35:12.551077120 INFO 2025-06-26 10:40:49,301 calibrate.py _nudge_pos():1806 [1] 237: 0.120 -0.0013402 -0.0005424 4387 14.63 -13.601 -6.870 2005-06-10T07:50:42.547368064 INFO 2025-06-26 10:40:49,515 calibrate.py _nudge_pos():1806 [1] 259: 0.120 -0.0001162 0.0001516 25 0.08 -215.684 351.080 2005-06-10T07:51:09.555517952 INFO 2025-06-26 10:40:49,545 calibrate.py _nudge_pos():1806 [1] 262: 0.100 -0.0000205 0.0000870 15 0.05 -65.303 345.530 2005-06-10T07:51:14.555175296 INFO 2025-06-26 10:40:49,925 calibrate.py _nudge_pos():1806 [1] 301: 0.110 -0.0003264 -0.0026656 10690 35.63 -1.360 -13.863 2005-06-10T08:27:31.556040576 INFO 2025-06-26 10:40:50,437 calibrate.py _nudge_pos():1806 [1] 351: 0.110 -0.0002113 -0.0021720 10580 35.26 -0.890 -11.413 2005-06-10T09:03:36.547728512 INFO 2025-06-26 10:40:50,965 calibrate.py _nudge_pos():1806 [1] 404: 0.110 -0.0000373 -0.0004699 9765 32.55 -0.170 -2.675 2005-06-10T09:37:01.550376448 INFO 2025-06-26 10:40:51,388 calibrate.py _nudge_pos():1806 [1] 447: 0.100 -0.0001453 -0.0004013 10465 34.88 -0.619 -2.132 2005-06-10T10:12:36.554118656 INFO 2025-06-26 10:40:51,943 calibrate.py _nudge_pos():1806 [1] 502: 0.100 -0.0000551 -0.0001482 9870 32.90 -0.249 -0.835 2005-06-10T10:46:24.555191040 INFO 2025-06-26 10:40:52,460 calibrate.py _nudge_pos():1806 [1] 554: 0.120 -0.0000143 -0.0000357 2475 8.25 -0.257 -0.801 2005-06-10T10:55:30.547787904 INFO 2025-06-26 10:40:53,127 calibrate.py _nudge_pos():1806 [1] 622: 0.110 -0.0000706 -0.0000487 2905 9.68 -1.085 -0.932 2005-06-10T11:06:18.553396480 INFO 2025-06-26 10:40:53,372 calibrate.py _nudge_pos():1862 [1] 625: - - - 3 0.01 - - INFO 2025-06-26 10:40:53,372 calibrate.py _nudge_pos():1868 [1] Points in final series = 96705 WARNING 2025-06-26 10:40:56,716 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:41:06,982 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:41:07,719 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:08,297 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:08,299 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.161.02/ctd1.nc INFO 2025-06-26 10:41:08,300 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:41:08,301 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:41:08,301 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:41:12,561 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:13,169 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:41:13,171 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.161.02/ctd2.nc INFO 2025-06-26 10:41:13,173 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd2_salinity values to NaN INFO 2025-06-26 10:41:13,173 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:41:13,173 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:41:13,204 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:41:14,130 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [586800] INFO 2025-06-26 10:41:14,308 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:41:14,315 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:41:14,316 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.161.02 ERROR 2025-06-26 10:41:14,316 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.161.02 INFO 2025-06-26 10:41:14,415 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_cal.nc INFO 2025-06-26 10:41:16,911 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:41:16,916 process.py align():251 [1] Alignment steps for 2005.161.02 INFO 2025-06-26 10:41:16,945 align.py process_cal():139 [1] Processing dorado_2005.161.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.161.02 INFO 2025-06-26 10:41:16,976 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:16,979 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:17,054 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:17,059 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:17,128 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:17,133 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:17,176 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:41:17,176 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:41:17,204 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:41:17,209 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:17,279 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:17,284 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,347 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:17,352 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,415 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:41:17,420 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,482 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,486 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,549 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,553 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,615 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,619 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,696 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,701 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,762 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,767 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,827 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,831 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,893 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,898 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:17,960 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:17,964 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,028 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,032 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,094 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,097 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,159 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,164 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,227 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,232 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,295 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,300 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,363 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,370 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,436 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,440 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,504 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,509 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,573 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.161.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:41:18,577 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:41:18,656 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:41:18,711 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:41:18,766 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.68 INFO 2025-06-26 10:41:18,823 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:41:18,883 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:41:18,932 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_align.nc INFO 2025-06-26 10:41:19,014 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:41:19,017 process.py resample():273 [1] Resampling steps for 2005.161.02 INFO 2025-06-26 10:41:19,017 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:41:19,044 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_align.nc mission netCDF file INFO 2025-06-26 10:41:19,050 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_align.nc mission netCDF file INFO 2025-06-26 10:41:19,051 resample.py get_mission_start_end():1145 [1] navigation: 2005-06-10T05:44:19.756824704 to 2005-06-10T11:06:43.151711488 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:41:19,054 resample.py get_mission_start_end():1145 [1] hs2 : 2005-06-10T05:44:02.977974144 to 2005-06-10T11:06:43.241705472 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:41:19,056 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-06-10T05:44:25.376439808 to 2005-06-10T11:06:43.111714176 (0 days 00:00:00.129991296 before mission_end) INFO 2025-06-26 10:41:19,058 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-06-10T05:44:25.606424064 to 2005-06-10T11:06:43.121713664 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 10:41:19,060 resample.py get_mission_start_end():1145 [1] isus : 2005-06-10T05:45:13.933113600 to 2005-06-10T11:06:43.081716352 (0 days 00:00:00.159989120 before mission_end) INFO 2025-06-26 10:41:19,062 resample.py get_mission_start_end():1145 [1] biolume : 2005-06-10T05:43:57.168338048 to 2005-06-10T11:06:42.081750400 (0 days 00:00:01.159955072 before mission_end) INFO 2025-06-26 10:41:19,064 resample.py get_mission_start_end():1145 [1] tailcone : 2005-06-10T05:43:58.858256384 to 2005-06-10T11:06:43.211707392 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 10:41:19,065 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_align.nc mission netCDF file INFO 2025-06-26 10:41:19,065 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,283 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,321 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,357 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,396 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,430 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,463 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,497 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,530 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,560 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,590 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,619 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,649 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,679 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,709 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,741 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,770 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,802 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,835 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,867 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,899 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,930 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,963 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,980 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:19,994 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:20,012 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:20,034 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:20,073 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:41:20,279 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_1S.nc INFO 2025-06-26 10:41:21,234 create_products.py gulper_odv():401 [1] No gulper times found for 2005.161.02 INFO 2025-06-26 10:41:21,234 process.py archive():337 [1] Archiving steps for 2005.161.02 INFO 2025-06-26 10:41:21,234 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:41:21,236 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:41:21,237 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.02_1S.nc INFO 2025-06-26 10:41:21,257 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:21,258 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.02_cal.nc INFO 2025-06-26 10:41:21,355 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:21,356 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.161.02_align.nc INFO 2025-06-26 10:41:21,442 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:41:21,468 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,491 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,495 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,512 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,575 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,581 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,611 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,633 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,690 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005161/2005.161.02 done. INFO 2025-06-26 10:41:21,690 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:41:21,690 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.161.02/dorado_2005.161.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf