INFO 2025-06-26 10:36:48,062 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:36:48,063 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ctdToUse = ctd1 INFO 2025-06-26 10:36:48,063 process.py process_mission():449 [1] Processing AUVCTD mission 2005.125.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:36:48,063 process.py download_process():165 [1] Download and processing steps for 2005.125.00 INFO 2025-06-26 10:36:48,063 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005125/2005.125.00 INFO 2025-06-26 10:36:48,063 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005125/2005.125.00 to /data/auv_data/dorado/missionlogs/2005.125.00 INFO 2025-06-26 10:36:49,613 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.125.00 INFO 2025-06-26 10:36:49,613 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/ctdDriver.log (7672939 bytes) INFO 2025-06-26 10:36:50,180 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.125.00/ctdDriver.log: [81444] INFO 2025-06-26 10:36:50,204 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/ctdDriver2.log (7672669 bytes) INFO 2025-06-26 10:36:50,794 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/gps.log (56660 bytes) INFO 2025-06-26 10:36:50,809 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/hydroscatlog.log (5235074 bytes) INFO 2025-06-26 10:36:51,412 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.125.00/hydroscatlog.log: [55982] INFO 2025-06-26 10:36:51,426 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/navigation.log (25721766 bytes) INFO 2025-06-26 10:36:53,316 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/isuslog.log (435349 bytes) INFO 2025-06-26 10:36:53,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/parosci.log (11204294 bytes) INFO 2025-06-26 10:36:54,270 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.125.00/parosci.log: [ 20752 20754 77200 77201 77203 77204 77206 77207 120891 120893 120894 120895 120896 120898 120899] INFO 2025-06-26 10:36:54,302 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/tailCone.log (5237131 bytes) INFO 2025-06-26 10:36:54,940 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.125.00/biolume.log (5939532 bytes) INFO 2025-06-26 10:36:55,507 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:36:55,818 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.20 seconds WARNING 2025-06-26 10:36:55,818 process.py download_process():196 [1] No lopc.bin file for 2005.125.00 INFO 2025-06-26 10:36:55,818 process.py calibrate():227 [1] Calibration steps for 2005.125.00 INFO 2025-06-26 10:36:56,007 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:36:56,010 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:36:56,578 calibrate.py _nudge_pos():1806 [1] 77: 0.180 0.0000955 0.0000634 1874 6.25 2.264 1.881 2005-05-05T15:36:48.923748224 INFO 2025-06-26 10:36:57,358 calibrate.py _nudge_pos():1806 [1] 159: 0.190 -0.0007533 0.0002961 9425 31.45 -3.549 1.745 2005-05-05T16:09:36.928930560 INFO 2025-06-26 10:36:57,965 calibrate.py _nudge_pos():1806 [1] 220: 0.180 -0.0007433 0.0003348 9780 32.60 -3.380 1.903 2005-05-05T16:43:12.930824960 INFO 2025-06-26 10:36:58,573 calibrate.py _nudge_pos():1806 [1] 282: 0.180 -0.0013917 -0.0000152 9979 33.28 -6.201 -0.084 2005-05-05T17:17:30.929842432 INFO 2025-06-26 10:36:59,088 calibrate.py _nudge_pos():1806 [1] 335: 0.180 -0.0030282 -0.0007009 11019 36.73 -12.230 -3.536 2005-05-05T17:55:06.925296128 INFO 2025-06-26 10:36:59,571 calibrate.py _nudge_pos():1806 [1] 385: 0.180 -0.0008013 -0.0004580 9531 31.78 -3.742 -2.670 2005-05-05T18:27:42.931300608 INFO 2025-06-26 10:37:00,165 calibrate.py _nudge_pos():1806 [1] 446: 0.180 -0.0001951 -0.0002928 10194 34.00 -0.852 -1.596 2005-05-05T19:02:42.927440896 INFO 2025-06-26 10:37:00,774 calibrate.py _nudge_pos():1806 [1] 509: 0.180 -0.0005642 -0.0003356 4639 15.46 -5.417 -4.022 2005-05-05T19:19:12.929621248 INFO 2025-06-26 10:37:00,785 calibrate.py _nudge_pos():1806 [1] 510: 0.180 0.0000085 -0.0000557 40 0.13 9.705 -79.357 2005-05-05T19:19:20.929073152 INFO 2025-06-26 10:37:01,453 calibrate.py _nudge_pos():1806 [1] 577: 0.180 0.0012558 -0.0007713 9740 32.46 5.745 -4.402 2005-05-05T19:52:54.931104640 INFO 2025-06-26 10:37:02,048 calibrate.py _nudge_pos():1806 [1] 635: 0.200 0.0011306 -0.0001235 9015 30.05 5.590 -0.762 2005-05-05T20:23:54.923686272 INFO 2025-06-26 10:37:02,669 calibrate.py _nudge_pos():1806 [1] 697: 0.180 0.0005560 0.0004346 10135 33.78 2.446 2.384 2005-05-05T20:58:42.930648064 INFO 2025-06-26 10:37:03,253 calibrate.py _nudge_pos():1806 [1] 755: 0.180 0.0006068 0.0005726 9915 33.05 2.729 3.211 2005-05-05T21:32:42.930898432 INFO 2025-06-26 10:37:03,448 calibrate.py _nudge_pos():1862 [1] 753: - - - 0 0.00 - - INFO 2025-06-26 10:37:03,448 calibrate.py _nudge_pos():1868 [1] Points in final series = 108954 WARNING 2025-06-26 10:37:07,188 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:37:19,041 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 2 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:37:25,312 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:37:25,964 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:37:25,967 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.125.00/ctd1.nc INFO 2025-06-26 10:37:25,968 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 10:37:25,968 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:37:25,968 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:37:26,752 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:37:27,409 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:37:27,412 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.125.00/ctd2.nc INFO 2025-06-26 10:37:27,413 calibrate.py _range_qc_combined_nc():898 [1] Setting 197 ctd2_salinity values to NaN INFO 2025-06-26 10:37:27,414 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:37:27,414 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:37:27,447 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:37:28,464 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 526320 650100 950880 950881 950882 1306200] INFO 2025-06-26 10:37:28,665 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:37:28,671 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:37:28,671 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.125.00 ERROR 2025-06-26 10:37:28,671 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.125.00 INFO 2025-06-26 10:37:28,760 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_cal.nc INFO 2025-06-26 10:37:32,901 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:37:32,906 process.py align():251 [1] Alignment steps for 2005.125.00 INFO 2025-06-26 10:37:32,936 align.py process_cal():139 [1] Processing dorado_2005.125.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.125.00 INFO 2025-06-26 10:37:32,968 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:37:32,972 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:37:33,051 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:37:33,055 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:37:33,131 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:37:33,136 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:37:33,182 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:37:33,182 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:37:33,212 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:37:33,217 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:37:33,292 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:37:33,297 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,363 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:37:33,367 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,435 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:37:33,439 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,505 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,510 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,577 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,581 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,647 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,651 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,721 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,725 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,791 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,795 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,864 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,868 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:33,936 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:33,940 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,007 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,012 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,078 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,083 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,148 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,152 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,217 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,222 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,289 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,293 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,362 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,367 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,436 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,441 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,509 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,513 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,581 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,586 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,652 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.125.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:37:34,656 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:37:34,741 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:37:34,798 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:37:34,857 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:37:34,917 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:37:34,981 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:37:35,037 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_align.nc INFO 2025-06-26 10:37:35,123 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:37:35,125 process.py resample():273 [1] Resampling steps for 2005.125.00 INFO 2025-06-26 10:37:35,126 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:37:35,152 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_align.nc mission netCDF file INFO 2025-06-26 10:37:35,158 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_align.nc mission netCDF file INFO 2025-06-26 10:37:35,159 resample.py get_mission_start_end():1145 [1] navigation: 2005-05-05T15:29:40.143121664 to 2005-05-05T21:33:02.129583360 (0 days 00:00:00.149989632 before mission_end) INFO 2025-06-26 10:37:35,161 resample.py get_mission_start_end():1145 [1] hs2 : 2005-05-05T15:29:23.324273792 to 2005-05-05T21:33:02.119584128 (0 days 00:00:00.159988864 before mission_end) INFO 2025-06-26 10:37:35,163 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-05-05T15:29:46.052716672 to 2005-05-05T21:33:02.259574400 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:37:35,165 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-05-05T15:29:46.302699776 to 2005-05-05T21:33:02.259574400 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:37:35,166 resample.py get_mission_start_end():1145 [1] isus : 2005-05-05T15:30:34.999363712 to 2005-05-05T21:33:02.279572992 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:37:35,167 resample.py get_mission_start_end():1145 [1] biolume : 2005-05-05T15:29:18.524568320 to 2005-05-05T21:33:01.149616256 (0 days 00:00:01.129956736 before mission_end) INFO 2025-06-26 10:37:35,169 resample.py get_mission_start_end():1145 [1] tailcone : 2005-05-05T15:29:17.914644480 to 2005-05-05T21:33:02.259574400 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:37:35,170 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_align.nc mission netCDF file INFO 2025-06-26 10:37:35,170 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,412 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,457 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,497 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,537 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,572 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,606 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,640 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,674 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,707 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,741 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,773 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,805 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,837 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,870 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,901 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,933 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:35,968 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,002 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,039 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,074 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,108 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,141 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,157 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,171 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,184 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,200 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,238 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:37:36,455 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_1S.nc INFO 2025-06-26 10:37:37,429 create_products.py gulper_odv():401 [1] No gulper times found for 2005.125.00 INFO 2025-06-26 10:37:37,430 process.py archive():337 [1] Archiving steps for 2005.125.00 INFO 2025-06-26 10:37:37,430 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:37:37,430 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:37:37,431 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.125.00_1S.nc INFO 2025-06-26 10:37:37,453 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:37:37,454 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.125.00_cal.nc INFO 2025-06-26 10:37:37,548 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:37:37,549 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.125.00_align.nc INFO 2025-06-26 10:37:37,647 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:37:37,674 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,698 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,703 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,721 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,791 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,798 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,832 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,855 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,914 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005125/2005.125.00 done. INFO 2025-06-26 10:37:37,914 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:37:37,914 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.125.00/dorado_2005.125.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf