INFO 2025-06-26 10:35:02,371 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:35:02,371 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ctdToUse = ctd1 INFO 2025-06-26 10:35:02,371 process.py process_mission():449 [1] Processing AUVCTD mission 2005.119.19 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:35:02,371 process.py download_process():165 [1] Download and processing steps for 2005.119.19 INFO 2025-06-26 10:35:02,372 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005119/2005.119.19 INFO 2025-06-26 10:35:02,372 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005119/2005.119.19 to /data/auv_data/dorado/missionlogs/2005.119.19 INFO 2025-06-26 10:35:03,262 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.119.19 INFO 2025-06-26 10:35:03,262 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/ctdDriver.log (4285027 bytes) INFO 2025-06-26 10:35:03,603 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/ctdDriver2.log (4285109 bytes) INFO 2025-06-26 10:35:03,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/gps.log (29516 bytes) INFO 2025-06-26 10:35:03,937 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/hydroscatlog.log (2924294 bytes) INFO 2025-06-26 10:35:04,296 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/navigation.log (14360254 bytes) INFO 2025-06-26 10:35:05,327 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/isuslog.log (242837 bytes) INFO 2025-06-26 10:35:05,355 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/parosci.log (6258854 bytes) INFO 2025-06-26 10:35:05,868 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.119.19/parosci.log: [116540 116541 116542 116543] INFO 2025-06-26 10:35:05,884 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/tailCone.log (2925835 bytes) INFO 2025-06-26 10:35:06,256 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.119.19/biolume.log (3319356 bytes) INFO 2025-06-26 10:35:06,574 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:35:06,746 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.48 seconds WARNING 2025-06-26 10:35:06,746 process.py download_process():196 [1] No lopc.bin file for 2005.119.19 INFO 2025-06-26 10:35:06,746 process.py calibrate():227 [1] Calibration steps for 2005.119.19 INFO 2025-06-26 10:35:06,878 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:35:06,880 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:35:07,535 calibrate.py _nudge_pos():1806 [1] 85: 0.140 -0.0006334 0.0002758 11343 37.81 -2.483 1.351 2005-04-29T19:03:13.026996096 INFO 2025-06-26 10:35:08,110 calibrate.py _nudge_pos():1806 [1] 145: 0.140 -0.0007145 0.0002378 10925 36.41 -2.910 1.210 2005-04-29T19:40:37.033271040 INFO 2025-06-26 10:35:08,657 calibrate.py _nudge_pos():1806 [1] 202: 0.150 -0.0008807 -0.0000991 11089 36.96 -3.534 -0.497 2005-04-29T20:18:31.027491840 INFO 2025-06-26 10:35:09,210 calibrate.py _nudge_pos():1806 [1] 259: 0.150 -0.0018516 -0.0003888 10879 36.26 -7.577 -1.986 2005-04-29T20:55:43.034588800 INFO 2025-06-26 10:35:09,759 calibrate.py _nudge_pos():1806 [1] 315: 0.140 -0.0021154 -0.0010655 10735 35.78 -8.777 -5.518 2005-04-29T21:32:25.033741696 INFO 2025-06-26 10:35:10,274 calibrate.py _nudge_pos():1806 [1] 367: 0.150 -0.0008426 -0.0004007 4005 13.35 -9.373 -5.563 2005-04-29T21:46:37.035375616 INFO 2025-06-26 10:35:10,351 calibrate.py _nudge_pos():1806 [1] 375: 0.140 0.0000261 -0.0000554 20 0.06 61.204 -162.042 2005-04-29T21:46:48.034621952 INFO 2025-06-26 10:35:10,572 calibrate.py _nudge_pos():1862 [1] 377: - - - 2 0.00 - - INFO 2025-06-26 10:35:10,572 calibrate.py _nudge_pos():1868 [1] Points in final series = 60840 WARNING 2025-06-26 10:35:12,712 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 11.11 Hz INFO 2025-06-26 10:35:13,173 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:35:13,649 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:35:14,014 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:35:14,016 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.119.19/ctd1.nc INFO 2025-06-26 10:35:14,018 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-26 10:35:14,018 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:35:14,018 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:35:14,487 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:35:14,864 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:35:14,866 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.119.19/ctd2.nc INFO 2025-06-26 10:35:14,867 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:35:14,868 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:35:14,868 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:35:14,889 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:35:15,478 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 97800 100920 101520 102720 102900 104040 211860 212820 213000 213840] INFO 2025-06-26 10:35:15,590 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:35:15,596 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:35:15,596 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.119.19 ERROR 2025-06-26 10:35:15,597 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.119.19 INFO 2025-06-26 10:35:15,646 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_cal.nc INFO 2025-06-26 10:35:15,722 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:35:15,726 process.py align():251 [1] Alignment steps for 2005.119.19 INFO 2025-06-26 10:35:15,755 align.py process_cal():139 [1] Processing dorado_2005.119.19_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.119.19 INFO 2025-06-26 10:35:15,775 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:35:15,777 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:35:15,827 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:35:15,831 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:35:15,878 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:35:15,881 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:35:15,909 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:35:15,909 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:35:15,927 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:35:15,931 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:35:15,977 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:35:15,980 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,023 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:35:16,026 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,069 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:35:16,072 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,114 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,117 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,158 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,162 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,203 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,206 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,248 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,252 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,293 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,297 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,338 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,341 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,383 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,386 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,428 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,431 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,474 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,478 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,520 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,523 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,565 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,568 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,612 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,615 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,656 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,660 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,702 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,706 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,748 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,751 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,793 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,797 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,839 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.119.19_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:35:16,842 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:35:16,898 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:35:16,936 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:35:16,974 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:35:17,015 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:35:17,059 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:35:17,094 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_align.nc INFO 2025-06-26 10:35:17,177 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:35:17,180 process.py resample():273 [1] Resampling steps for 2005.119.19 INFO 2025-06-26 10:35:17,180 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:35:17,209 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_align.nc mission netCDF file INFO 2025-06-26 10:35:17,216 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_align.nc mission netCDF file INFO 2025-06-26 10:35:17,218 resample.py get_mission_start_end():1145 [1] navigation: 2005-04-29T18:24:21.646706560 to 2005-04-29T21:47:10.433087616 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:35:17,220 resample.py get_mission_start_end():1145 [1] hs2 : 2005-04-29T18:24:04.197901952 to 2005-04-29T21:47:10.363092480 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:35:17,222 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-04-29T18:24:18.906894208 to 2005-04-29T21:47:10.353093120 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 10:35:17,224 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-04-29T18:24:19.166876544 to 2005-04-29T21:47:10.343093888 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:35:17,225 resample.py get_mission_start_end():1145 [1] isus : 2005-04-29T18:25:16.252965632 to 2005-04-29T21:47:09.303164928 (0 days 00:00:01.129922688 before mission_end) INFO 2025-06-26 10:35:17,227 resample.py get_mission_start_end():1145 [1] biolume : 2005-04-29T18:23:59.348199808 to 2005-04-29T21:47:10.003082752 (0 days 00:00:00.430004864 before mission_end) INFO 2025-06-26 10:35:17,229 resample.py get_mission_start_end():1145 [1] tailcone : 2005-04-29T18:24:00.428160128 to 2005-04-29T21:47:10.403089792 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 10:35:17,230 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_align.nc mission netCDF file INFO 2025-06-26 10:35:17,230 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,379 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,407 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,433 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,459 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,483 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,508 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,532 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,554 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,575 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,596 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,617 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,638 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,658 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,678 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,699 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,719 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,741 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,763 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,784 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,805 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,827 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,848 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,861 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,873 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,884 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,898 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:17,923 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:35:18,087 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_1S.nc INFO 2025-06-26 10:35:18,918 create_products.py gulper_odv():401 [1] No gulper times found for 2005.119.19 INFO 2025-06-26 10:35:18,919 process.py archive():337 [1] Archiving steps for 2005.119.19 INFO 2025-06-26 10:35:18,919 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19, BASE_PATH = /data/auv_data INFO 2025-06-26 10:35:18,919 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:35:18,921 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.119.19_1S.nc INFO 2025-06-26 10:35:18,938 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:35:18,939 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.119.19_cal.nc INFO 2025-06-26 10:35:19,001 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:35:19,002 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.119.19_align.nc INFO 2025-06-26 10:35:19,062 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:35:19,079 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,096 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,101 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,115 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,160 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,166 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,189 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,205 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,243 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005119/2005.119.19 done. INFO 2025-06-26 10:35:19,243 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:35:19,243 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.119.19/dorado_2005.119.19_processing.log /Volumes/AUVCTD/surveys/2005/netcdf