INFO 2025-06-26 10:33:13,951 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:33:13,951 process.py process_mission():434 [1] dorado_info[mission]["comment"] = M1.5 to C1.5.for Dr. Chavez - first missions since drop weight installed - ctdToUse = ctd1 INFO 2025-06-26 10:33:13,951 process.py process_mission():449 [1] Processing AUVCTD mission 2005.096.08 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:33:13,951 process.py download_process():165 [1] Download and processing steps for 2005.096.08 INFO 2025-06-26 10:33:13,951 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005096/2005.096.08 INFO 2025-06-26 10:33:13,952 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005096/2005.096.08 to /data/auv_data/dorado/missionlogs/2005.096.08 INFO 2025-06-26 10:33:14,365 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.096.08 INFO 2025-06-26 10:33:14,365 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/ctdDriver.log (5638555 bytes) INFO 2025-06-26 10:33:14,803 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/ctdDriver2.log (5642157 bytes) INFO 2025-06-26 10:33:15,244 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/gps.log (43700 bytes) INFO 2025-06-26 10:33:15,257 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/hydroscatlog.log (3848714 bytes) INFO 2025-06-26 10:33:15,721 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/navigation.log (18908918 bytes) INFO 2025-06-26 10:33:17,117 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/isuslog.log (319861 bytes) INFO 2025-06-26 10:33:17,154 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/parosci.log (3757238 bytes) INFO 2025-06-26 10:33:17,492 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.08/tailCone.log (3850555 bytes) INFO 2025-06-26 10:33:17,966 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.60 seconds WARNING 2025-06-26 10:33:17,967 process.py download_process():196 [1] No lopc.bin file for 2005.096.08 INFO 2025-06-26 10:33:17,967 process.py calibrate():227 [1] Calibration steps for 2005.096.08 INFO 2025-06-26 10:33:18,113 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:33:18,115 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:33:19,422 calibrate.py _nudge_pos():1806 [1] 157: 0.180 -0.0001052 0.0002156 30 0.10 -161.627 413.405 2005-04-06T18:08:40.520214784 INFO 2025-06-26 10:33:19,441 calibrate.py _nudge_pos():1806 [1] 159: 0.170 0.0000528 0.0000073 30 0.10 80.974 13.915 2005-04-06T18:08:47.529734656 INFO 2025-06-26 10:33:19,563 calibrate.py _nudge_pos():1806 [1] 172: 0.180 0.0040818 -0.0003545 6185 20.61 29.407 -3.187 2005-04-06T18:29:36.524172544 INFO 2025-06-26 10:33:19,574 calibrate.py _nudge_pos():1806 [1] 173: 0.190 0.0000019 -0.0000041 25 0.08 3.549 -9.459 2005-04-06T18:29:41.523829888 INFO 2025-06-26 10:33:20,106 calibrate.py _nudge_pos():1806 [1] 227: 0.170 -0.0000049 0.0000984 35 0.11 -6.413 160.709 2005-04-06T18:30:41.529719296 INFO 2025-06-26 10:33:20,116 calibrate.py _nudge_pos():1806 [1] 228: 0.180 0.0003934 -0.0002457 240 0.80 73.342 -57.159 2005-04-06T18:31:29.526431360 INFO 2025-06-26 10:33:20,160 calibrate.py _nudge_pos():1806 [1] 232: 0.190 0.0000631 -0.0000132 55 0.18 52.038 -13.626 2005-04-06T18:31:43.525472384 INFO 2025-06-26 10:33:20,192 calibrate.py _nudge_pos():1806 [1] 235: 0.190 0.0035303 -0.0003999 11295 37.65 13.925 -1.968 2005-04-06T19:09:24.520583680 INFO 2025-06-26 10:33:20,745 calibrate.py _nudge_pos():1806 [1] 290: 0.180 0.0015663 -0.0004331 4170 13.90 16.737 -5.774 2005-04-06T19:24:12.529750784 INFO 2025-06-26 10:33:20,765 calibrate.py _nudge_pos():1806 [1] 292: 0.190 0.0034745 -0.0018068 9354 31.18 16.546 -10.738 2005-04-06T19:55:24.521510656 INFO 2025-06-26 10:33:21,216 calibrate.py _nudge_pos():1806 [1] 338: 0.180 0.0000630 0.0000055 20 0.06 147.685 16.041 2005-04-06T19:56:13.528153472 INFO 2025-06-26 10:33:21,226 calibrate.py _nudge_pos():1806 [1] 339: 0.180 0.0000408 -0.0000490 35 0.11 53.408 -80.180 2005-04-06T19:56:20.527673984 INFO 2025-06-26 10:33:21,437 calibrate.py _nudge_pos():1806 [1] 360: 0.180 0.0034672 -0.0011056 13120 43.73 11.772 -4.685 2005-04-06T20:40:24.526547712 INFO 2025-06-26 10:33:22,075 calibrate.py _nudge_pos():1806 [1] 426: 0.180 0.0024874 -0.0008489 11435 38.11 9.689 -4.127 2005-04-06T21:19:36.525424512 INFO 2025-06-26 10:33:22,770 calibrate.py _nudge_pos():1806 [1] 497: 0.180 0.0021006 -0.0002321 11560 38.53 8.093 -1.116 2005-04-06T21:59:18.522246656 INFO 2025-06-26 10:33:23,526 calibrate.py _nudge_pos():1806 [1] 571: 0.180 0.0024266 0.0000942 9744 32.48 11.089 0.537 2005-04-06T22:33:00.523730048 INFO 2025-06-26 10:33:23,769 calibrate.py _nudge_pos():1862 [1] 573: - - - 0 0.00 - - INFO 2025-06-26 10:33:23,769 calibrate.py _nudge_pos():1868 [1] Points in final series = 80106 WARNING 2025-06-26 10:33:23,833 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:33:24,428 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:25,032 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:25,513 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:25,515 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.096.08/ctd1.nc INFO 2025-06-26 10:33:25,516 calibrate.py _range_qc_combined_nc():898 [1] Setting 185 ctd1_salinity values to NaN INFO 2025-06-26 10:33:25,516 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:25,516 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:33:26,085 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:26,591 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:26,593 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.096.08/ctd2.nc INFO 2025-06-26 10:33:26,595 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:33:26,595 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:26,595 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 10:33:26,609 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.08 ERROR 2025-06-26 10:33:26,609 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.08 ERROR 2025-06-26 10:33:26,609 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.08 INFO 2025-06-26 10:33:26,675 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_cal.nc INFO 2025-06-26 10:33:26,754 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:33:26,758 process.py align():251 [1] Alignment steps for 2005.096.08 INFO 2025-06-26 10:33:26,786 align.py process_cal():139 [1] Processing dorado_2005.096.08_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.096.08 INFO 2025-06-26 10:33:26,812 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:26,815 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:26,879 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:26,884 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:26,942 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:26,947 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:26,982 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:33:26,982 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:33:27,006 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:27,010 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:27,067 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:27,071 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,123 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:27,127 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,179 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:27,183 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,235 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,239 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,292 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,295 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,348 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,352 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,405 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,409 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,460 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,464 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,516 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,519 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,571 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,575 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,627 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,631 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,683 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,687 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,738 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,742 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,794 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,798 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,850 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,853 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,905 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,909 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:27,962 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:27,966 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:28,019 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:28,023 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:28,077 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:28,081 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:28,132 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:28,136 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:28,195 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:28,232 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:28,270 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:28,309 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:28,352 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_align.nc INFO 2025-06-26 10:33:28,422 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:33:28,425 process.py resample():273 [1] Resampling steps for 2005.096.08 INFO 2025-06-26 10:33:28,426 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:33:28,452 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_align.nc mission netCDF file INFO 2025-06-26 10:33:28,457 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_align.nc mission netCDF file INFO 2025-06-26 10:33:28,459 resample.py get_mission_start_end():1145 [1] navigation: 2005-04-06T18:06:20.739790464 to 2005-04-06T22:33:23.742139520 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:33:28,460 resample.py get_mission_start_end():1145 [1] hs2 : 2005-04-06T18:06:04.770884224 to 2005-04-06T22:33:23.742139520 (0 days 00:00:00.019998592 before mission_end) INFO 2025-06-26 10:33:28,462 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-04-06T18:06:27.639317760 to 2005-04-06T22:33:23.752138880 (0 days 00:00:00.009999232 before mission_end) INFO 2025-06-26 10:33:28,463 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-04-06T18:06:17.270028160 to 2005-04-06T22:33:23.652145664 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:33:28,465 resample.py get_mission_start_end():1145 [1] isus : 2005-04-06T18:07:15.376047360 to 2005-04-06T22:33:22.792204672 (0 days 00:00:00.969933440 before mission_end) INFO 2025-06-26 10:33:28,466 resample.py get_mission_start_end():1145 [1] tailcone : 2005-04-06T18:06:00.361186304 to 2005-04-06T22:33:23.762138112 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:33:28,467 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_align.nc mission netCDF file INFO 2025-06-26 10:33:28,468 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,651 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,685 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,718 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,750 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,779 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,808 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,835 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,863 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,889 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,916 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,942 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,967 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:28,994 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,022 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,050 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,075 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,104 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,134 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,166 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,195 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,223 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,251 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,266 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,278 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,291 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,321 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:29,507 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_1S.nc INFO 2025-06-26 10:33:30,411 create_products.py gulper_odv():401 [1] No gulper times found for 2005.096.08 INFO 2025-06-26 10:33:30,411 process.py archive():337 [1] Archiving steps for 2005.096.08 INFO 2025-06-26 10:33:30,411 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08, BASE_PATH = /data/auv_data INFO 2025-06-26 10:33:30,412 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:33:30,413 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.08_1S.nc INFO 2025-06-26 10:33:30,429 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:30,429 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.08_cal.nc INFO 2025-06-26 10:33:30,496 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:30,497 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.08_align.nc INFO 2025-06-26 10:33:30,564 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:30,586 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,604 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,609 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,623 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,678 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,684 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,699 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,719 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.08 done. INFO 2025-06-26 10:33:30,719 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:33:30,720 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.08/dorado_2005.096.08_processing.log /Volumes/AUVCTD/surveys/2005/netcdf