INFO 2025-06-26 10:33:09,372 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:33:09,373 process.py process_mission():434 [1] dorado_info[mission]["comment"] = M1.5 to C1.5.for Dr. Chavez - first missions since drop weight installed - ctdToUse = ctd1 INFO 2025-06-26 10:33:09,373 process.py process_mission():449 [1] Processing AUVCTD mission 2005.096.07 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:33:09,373 process.py download_process():165 [1] Download and processing steps for 2005.096.07 INFO 2025-06-26 10:33:09,373 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005096/2005.096.07 INFO 2025-06-26 10:33:09,373 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005096/2005.096.07 to /data/auv_data/dorado/missionlogs/2005.096.07 INFO 2025-06-26 10:33:09,491 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.096.07 INFO 2025-06-26 10:33:09,491 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/ctdDriver.log (628627 bytes) INFO 2025-06-26 10:33:09,544 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/ctdDriver2.log (632317 bytes) INFO 2025-06-26 10:33:09,606 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/gps.log (15980 bytes) INFO 2025-06-26 10:33:09,620 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/hydroscatlog.log (432494 bytes) INFO 2025-06-26 10:33:09,686 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/navigation.log (2105246 bytes) INFO 2025-06-26 10:33:09,855 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/isuslog.log (34837 bytes) INFO 2025-06-26 10:33:09,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/parosci.log (415622 bytes) INFO 2025-06-26 10:33:09,902 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.096.07/tailCone.log (433051 bytes) INFO 2025-06-26 10:33:09,965 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.47 seconds WARNING 2025-06-26 10:33:09,965 process.py download_process():196 [1] No lopc.bin file for 2005.096.07 INFO 2025-06-26 10:33:09,965 process.py calibrate():227 [1] Calibration steps for 2005.096.07 INFO 2025-06-26 10:33:10,029 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:33:10,031 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:33:11,583 calibrate.py _nudge_pos():1806 [1] 184: 0.130 0.0033245 -0.0007989 7980 26.60 18.565 -5.566 2005-04-06T17:51:48.579537408 INFO 2025-06-26 10:33:11,824 calibrate.py _nudge_pos():1862 [1] 188: - - - 4 0.01 - - INFO 2025-06-26 10:33:11,824 calibrate.py _nudge_pos():1868 [1] Points in final series = 8912 WARNING 2025-06-26 10:33:11,834 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz INFO 2025-06-26 10:33:11,915 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:12,000 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:12,058 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:12,059 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.096.07/ctd1.nc INFO 2025-06-26 10:33:12,060 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:33:12,061 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:12,061 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:33:12,136 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:12,192 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 8 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:12,193 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.096.07/ctd2.nc INFO 2025-06-26 10:33:12,194 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:33:12,194 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:12,195 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 10:33:12,201 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.07 ERROR 2025-06-26 10:33:12,201 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.07 ERROR 2025-06-26 10:33:12,202 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.096.07 INFO 2025-06-26 10:33:12,212 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_cal.nc INFO 2025-06-26 10:33:12,254 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:33:12,258 process.py align():251 [1] Alignment steps for 2005.096.07 INFO 2025-06-26 10:33:12,279 align.py process_cal():139 [1] Processing dorado_2005.096.07_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.096.07 INFO 2025-06-26 10:33:12,286 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:12,288 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:12,303 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:12,304 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:12,318 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:12,319 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:12,327 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:33:12,327 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:33:12,333 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:12,334 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:12,347 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:12,349 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,362 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:12,364 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,377 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:12,378 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,392 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,394 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,407 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,409 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,421 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,423 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,437 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,438 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,452 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,454 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,467 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,469 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,483 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,485 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,499 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,501 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,515 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,517 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,530 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,532 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,546 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,548 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,561 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,563 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,577 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,579 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,594 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,596 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,610 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,612 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,625 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,627 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,641 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.096.07_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:12,643 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:12,659 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:12,673 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:12,687 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.63 INFO 2025-06-26 10:33:12,701 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:12,715 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_align.nc INFO 2025-06-26 10:33:12,779 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:33:12,782 process.py resample():273 [1] Resampling steps for 2005.096.07 INFO 2025-06-26 10:33:12,783 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:33:12,803 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_align.nc mission netCDF file INFO 2025-06-26 10:33:12,808 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_align.nc mission netCDF file INFO 2025-06-26 10:33:12,809 resample.py get_mission_start_end():1145 [1] navigation: 2005-04-06T17:22:32.189858432 to 2005-04-06T17:52:14.377770240 (0 days 00:00:00.059995776 before mission_end) INFO 2025-06-26 10:33:12,810 resample.py get_mission_start_end():1145 [1] hs2 : 2005-04-06T17:22:15.660990720 to 2005-04-06T17:52:14.437766016 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:33:12,811 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-04-06T17:22:30.549970688 to 2005-04-06T17:52:14.237779584 (0 days 00:00:00.199986432 before mission_end) INFO 2025-06-26 10:33:12,813 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-04-06T17:22:20.190680320 to 2005-04-06T17:52:14.397768704 (0 days 00:00:00.039997312 before mission_end) INFO 2025-06-26 10:33:12,814 resample.py get_mission_start_end():1145 [1] isus : 2005-04-06T17:23:27.056099712 to 2005-04-06T17:52:13.177852416 (0 days 00:00:01.259913600 before mission_end) INFO 2025-06-26 10:33:12,815 resample.py get_mission_start_end():1145 [1] tailcone : 2005-04-06T17:22:12.161230336 to 2005-04-06T17:52:14.337772800 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:33:12,816 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_align.nc mission netCDF file INFO 2025-06-26 10:33:12,817 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,864 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,875 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,886 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,897 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,908 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,919 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,929 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,939 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,948 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,957 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,967 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,977 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,986 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:12,995 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,006 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,015 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,026 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,037 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,047 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,057 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,067 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,077 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,086 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,095 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,104 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,115 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:13,220 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_1S.nc INFO 2025-06-26 10:33:13,853 create_products.py gulper_odv():401 [1] No gulper times found for 2005.096.07 INFO 2025-06-26 10:33:13,853 process.py archive():337 [1] Archiving steps for 2005.096.07 INFO 2025-06-26 10:33:13,853 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07, BASE_PATH = /data/auv_data INFO 2025-06-26 10:33:13,853 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:33:13,855 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.07_1S.nc INFO 2025-06-26 10:33:13,862 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:13,863 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.07_cal.nc INFO 2025-06-26 10:33:13,875 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:13,876 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.096.07_align.nc INFO 2025-06-26 10:33:13,889 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:13,897 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,905 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,909 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,915 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,925 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,929 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,935 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,942 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005096/2005.096.07 done. INFO 2025-06-26 10:33:13,942 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:33:13,942 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.096.07/dorado_2005.096.07_processing.log /Volumes/AUVCTD/surveys/2005/netcdf