INFO 2025-06-26 10:33:03,876 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:33:03,877 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Depth abort problems - lots of missions for this biolume survey - ctdToUse = ctd1 INFO 2025-06-26 10:33:03,877 process.py process_mission():449 [1] Processing BIOLUME mission 2005.027.16 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:33:03,877 process.py download_process():165 [1] Download and processing steps for 2005.027.16 INFO 2025-06-26 10:33:03,877 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.16 INFO 2025-06-26 10:33:03,877 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.16 to /data/auv_data/dorado/missionlogs/2005.027.16 INFO 2025-06-26 10:33:03,970 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.027.16 INFO 2025-06-26 10:33:03,970 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/ctdDriver.log (199539 bytes) INFO 2025-06-26 10:33:03,992 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/ctdDriver2.log (202965 bytes) INFO 2025-06-26 10:33:04,017 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/gps.log (7628 bytes) INFO 2025-06-26 10:33:04,025 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/hydroscatlog.log (142034 bytes) INFO 2025-06-26 10:33:04,049 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/navigation.log (674850 bytes) INFO 2025-06-26 10:33:04,113 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/isuslog.log (2357 bytes) INFO 2025-06-26 10:33:04,117 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/parosci.log (137318 bytes) INFO 2025-06-26 10:33:04,133 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/tailCone.log (142267 bytes) INFO 2025-06-26 10:33:04,157 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.16/biolume.log (164156 bytes) INFO 2025-06-26 10:33:04,177 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:33:04,189 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.22 seconds WARNING 2025-06-26 10:33:04,189 process.py download_process():196 [1] No lopc.bin file for 2005.027.16 INFO 2025-06-26 10:33:04,189 process.py calibrate():227 [1] Calibration steps for 2005.027.16 INFO 2025-06-26 10:33:04,251 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:33:04,253 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:33:04,795 calibrate.py _nudge_pos():1806 [1] 75: 0.040 -0.0010915 -0.0000878 2500 8.33 -19.447 -1.952 2005-01-27T07:26:48.432879872 INFO 2025-06-26 10:33:04,977 calibrate.py _nudge_pos():1862 [1] 72: - - - 1 0.00 - - INFO 2025-06-26 10:33:04,978 calibrate.py _nudge_pos():1868 [1] Points in final series = 2851 WARNING 2025-06-26 10:33:04,984 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz INFO 2025-06-26 10:33:05,021 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:05,063 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:05,082 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:33:05,083 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.027.16/ctd1.nc INFO 2025-06-26 10:33:05,084 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:33:05,085 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:05,085 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:33:05,118 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 16 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:05,137 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 16 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:33:05,138 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.027.16/ctd2.nc INFO 2025-06-26 10:33:05,139 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:33:05,140 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:33:05,140 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:33:05,147 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:33:05,179 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:33:05,184 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:33:05,184 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.16 ERROR 2025-06-26 10:33:05,184 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.16 INFO 2025-06-26 10:33:05,189 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_cal.nc INFO 2025-06-26 10:33:05,229 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:33:05,233 process.py align():251 [1] Alignment steps for 2005.027.16 INFO 2025-06-26 10:33:05,254 align.py process_cal():139 [1] Processing dorado_2005.027.16_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.027.16 INFO 2025-06-26 10:33:05,258 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:05,260 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:05,271 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:05,272 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:05,282 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:05,284 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:05,290 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:33:05,290 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:33:05,294 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:33:05,295 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:05,304 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:05,306 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,316 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:05,318 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,327 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:33:05,329 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,339 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,340 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,350 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,352 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,361 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,363 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,373 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,374 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,384 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,386 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,396 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,398 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,410 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,412 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,421 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,423 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,433 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,434 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,444 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,445 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,455 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,457 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,467 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,469 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,480 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,481 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,491 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,493 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,504 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,506 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,516 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,519 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,529 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.16_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:33:05,531 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:33:05,608 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:33:05,621 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:33:05,633 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:33:05,646 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:33:05,659 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:05,670 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_align.nc INFO 2025-06-26 10:33:05,711 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:33:05,713 process.py resample():273 [1] Resampling steps for 2005.027.16 INFO 2025-06-26 10:33:05,714 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:33:05,734 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_align.nc mission netCDF file INFO 2025-06-26 10:33:05,739 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_align.nc mission netCDF file INFO 2025-06-26 10:33:05,740 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-27T07:17:36.650679552 to 2005-01-27T07:27:06.631633280 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:33:05,742 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-27T07:17:18.961891456 to 2005-01-27T07:27:06.721627008 (0 days 00:00:00.019998720 before mission_end) INFO 2025-06-26 10:33:05,743 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-27T07:17:42.020311808 to 2005-01-27T07:27:06.741625728 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:33:05,744 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-27T07:17:32.040995328 to 2005-01-27T07:27:06.511641472 (0 days 00:00:00.229984256 before mission_end) INFO 2025-06-26 10:33:05,745 resample.py get_mission_start_end():1145 [1] isus : 2005-01-27T07:18:39.296388096 to 2005-01-27T07:27:06.271657984 (0 days 00:00:00.469967744 before mission_end) INFO 2025-06-26 10:33:05,747 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-27T07:17:14.152186624 to 2005-01-27T07:27:06.091635968 (0 days 00:00:00.649989760 before mission_end) INFO 2025-06-26 10:33:05,748 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-27T07:17:16.052090624 to 2005-01-27T07:27:06.631633280 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:33:05,748 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_align.nc mission netCDF file INFO 2025-06-26 10:33:05,749 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,782 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,790 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,798 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,807 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,815 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,823 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,831 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,840 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,847 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,854 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,861 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,869 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,876 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,884 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,891 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,899 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,907 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,916 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,924 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,933 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,941 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,950 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,958 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,966 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,974 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,983 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:05,992 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:06,089 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_1S.nc INFO 2025-06-26 10:33:06,576 create_products.py gulper_odv():401 [1] No gulper times found for 2005.027.16 INFO 2025-06-26 10:33:06,577 process.py archive():337 [1] Archiving steps for 2005.027.16 INFO 2025-06-26 10:33:06,577 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16, BASE_PATH = /data/auv_data INFO 2025-06-26 10:33:06,577 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:33:06,578 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.16_1S.nc INFO 2025-06-26 10:33:06,585 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:06,585 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.16_cal.nc INFO 2025-06-26 10:33:06,594 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:06,595 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.16_align.nc INFO 2025-06-26 10:33:06,603 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:06,609 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,614 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,617 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,621 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,628 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,632 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,637 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,642 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,648 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.16 done. INFO 2025-06-26 10:33:06,648 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:33:06,648 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.16/dorado_2005.027.16_processing.log /Volumes/AUVCTD/surveys/2005/netcdf