INFO 2025-06-26 10:32:57,674 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:32:57,674 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Depth abort problems - lots of missions for this biolume survey - ctdToUse = ctd1 INFO 2025-06-26 10:32:57,674 process.py process_mission():449 [1] Processing BIOLUME mission 2005.027.14 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:32:57,674 process.py download_process():165 [1] Download and processing steps for 2005.027.14 INFO 2025-06-26 10:32:57,674 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.14 INFO 2025-06-26 10:32:57,675 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.14 to /data/auv_data/dorado/missionlogs/2005.027.14 INFO 2025-06-26 10:32:57,769 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.027.14 INFO 2025-06-26 10:32:57,769 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/ctdDriver.log (167595 bytes) INFO 2025-06-26 10:32:57,795 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/ctdDriver2.log (171285 bytes) INFO 2025-06-26 10:32:57,817 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/gps.log (12884 bytes) INFO 2025-06-26 10:32:57,827 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/hydroscatlog.log (118154 bytes) INFO 2025-06-26 10:32:57,851 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/navigation.log (558030 bytes) INFO 2025-06-26 10:32:57,903 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/isuslog.log (1941 bytes) INFO 2025-06-26 10:32:57,907 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/parosci.log (114806 bytes) INFO 2025-06-26 10:32:57,920 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/tailCone.log (118555 bytes) INFO 2025-06-26 10:32:57,941 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.14/biolume.log (137228 bytes) INFO 2025-06-26 10:32:57,958 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:32:57,967 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.20 seconds WARNING 2025-06-26 10:32:57,968 process.py download_process():196 [1] No lopc.bin file for 2005.027.14 INFO 2025-06-26 10:32:57,968 process.py calibrate():227 [1] Calibration steps for 2005.027.14 INFO 2025-06-26 10:32:58,025 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:32:58,026 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:32:58,574 calibrate.py _nudge_pos():1806 [1] 77: 0.080 -0.0000349 -0.0000031 20 0.06 -81.831 -8.931 2005-01-27T06:56:39.396807424 INFO 2025-06-26 10:32:58,657 calibrate.py _nudge_pos():1806 [1] 86: 0.080 -0.0000632 -0.0001770 1620 5.40 -1.738 -6.077 2005-01-27T07:02:12.393995520 INFO 2025-06-26 10:32:59,411 calibrate.py _nudge_pos():1862 [1] 145: - - - 1 0.00 - - INFO 2025-06-26 10:32:59,411 calibrate.py _nudge_pos():1868 [1] Points in final series = 2356 WARNING 2025-06-26 10:32:59,417 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz INFO 2025-06-26 10:32:59,450 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:59,486 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:59,502 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:59,504 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.027.14/ctd1.nc INFO 2025-06-26 10:32:59,505 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:32:59,505 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:32:59,505 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:32:59,535 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 7 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:59,552 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 7 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:59,553 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.027.14/ctd2.nc INFO 2025-06-26 10:32:59,554 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:32:59,554 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:32:59,555 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:32:59,561 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:32:59,590 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:32:59,595 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:32:59,595 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.14 ERROR 2025-06-26 10:32:59,595 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.14 INFO 2025-06-26 10:32:59,600 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_cal.nc INFO 2025-06-26 10:32:59,642 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:32:59,647 process.py align():251 [1] Alignment steps for 2005.027.14 INFO 2025-06-26 10:32:59,667 align.py process_cal():139 [1] Processing dorado_2005.027.14_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.027.14 INFO 2025-06-26 10:32:59,672 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:59,673 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:59,684 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:59,685 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:59,694 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:59,695 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:59,701 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:32:59,701 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:32:59,706 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:59,707 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:59,717 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:59,718 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,728 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:59,729 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,738 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:59,740 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,749 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,751 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,761 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,763 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,772 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,774 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,783 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,785 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,795 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,797 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,807 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,809 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,818 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,820 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,830 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,831 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,841 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,842 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,852 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,853 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,864 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,866 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,876 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,878 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,888 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,890 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,900 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,902 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,912 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,913 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,923 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,925 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,935 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.14_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:59,937 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:59,950 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:59,962 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:59,974 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:59,987 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:33:00,000 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:33:00,016 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_align.nc INFO 2025-06-26 10:33:00,067 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:33:00,069 process.py resample():273 [1] Resampling steps for 2005.027.14 INFO 2025-06-26 10:33:00,070 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:33:00,095 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_align.nc mission netCDF file INFO 2025-06-26 10:33:00,100 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_align.nc mission netCDF file INFO 2025-06-26 10:33:00,101 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-27T06:55:41.610765952 to 2005-01-27T07:03:32.598501248 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 10:33:00,102 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-27T06:55:23.811985280 to 2005-01-27T07:03:32.568503168 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-26 10:33:00,103 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-27T06:55:38.610971392 to 2005-01-27T07:03:32.588501888 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 10:33:00,105 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-27T06:55:28.101691520 to 2005-01-27T07:03:32.578502400 (0 days 00:00:00.079994752 before mission_end) INFO 2025-06-26 10:33:00,106 resample.py get_mission_start_end():1145 [1] isus : 2005-01-27T06:56:44.286472320 to 2005-01-27T07:03:28.588775936 (0 days 00:00:04.069721216 before mission_end) INFO 2025-06-26 10:33:00,107 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-27T06:55:19.032278528 to 2005-01-27T07:03:31.988508672 (0 days 00:00:00.669988480 before mission_end) INFO 2025-06-26 10:33:00,108 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-27T06:55:20.902184704 to 2005-01-27T07:03:32.658497152 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:33:00,109 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_align.nc mission netCDF file INFO 2025-06-26 10:33:00,109 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,142 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,150 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,159 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,167 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,176 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,185 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,193 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,201 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,208 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,216 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,223 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,229 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,237 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,244 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,252 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,259 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,268 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,276 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,284 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,293 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,301 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,309 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,318 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,326 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,335 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,343 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,353 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:33:00,446 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_1S.nc INFO 2025-06-26 10:33:00,933 create_products.py gulper_odv():401 [1] No gulper times found for 2005.027.14 INFO 2025-06-26 10:33:00,934 process.py archive():337 [1] Archiving steps for 2005.027.14 INFO 2025-06-26 10:33:00,934 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14, BASE_PATH = /data/auv_data INFO 2025-06-26 10:33:00,934 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:33:00,935 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.14_1S.nc INFO 2025-06-26 10:33:00,941 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:00,942 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.14_cal.nc INFO 2025-06-26 10:33:00,949 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:00,950 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.14_align.nc INFO 2025-06-26 10:33:00,959 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:33:00,966 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,970 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,975 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,980 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,987 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,991 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:00,995 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:01,000 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:01,007 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.14 done. INFO 2025-06-26 10:33:01,008 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:33:01,008 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.14/dorado_2005.027.14_processing.log /Volumes/AUVCTD/surveys/2005/netcdf