INFO 2025-06-26 10:32:25,734 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:32:25,734 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Depth abort problems - lots of missions for this biolume survey - ctdToUse = ctd1 INFO 2025-06-26 10:32:25,734 process.py process_mission():449 [1] Processing BIOLUME mission 2005.027.05 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:32:25,734 process.py download_process():165 [1] Download and processing steps for 2005.027.05 INFO 2025-06-26 10:32:25,734 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.05 INFO 2025-06-26 10:32:25,735 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005027/2005.027.05 to /data/auv_data/dorado/missionlogs/2005.027.05 INFO 2025-06-26 10:32:25,820 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.027.05 INFO 2025-06-26 10:32:25,821 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/ctdDriver.log (119635 bytes) INFO 2025-06-26 10:32:25,837 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/ctdDriver2.log (123237 bytes) INFO 2025-06-26 10:32:25,852 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/gps.log (9140 bytes) INFO 2025-06-26 10:32:25,860 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/hydroscatlog.log (87614 bytes) INFO 2025-06-26 10:32:25,876 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/navigation.log (407462 bytes) INFO 2025-06-26 10:32:25,918 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/isuslog.log (1397 bytes) INFO 2025-06-26 10:32:25,922 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/parosci.log (85430 bytes) INFO 2025-06-26 10:32:25,933 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/tailCone.log (87787 bytes) INFO 2025-06-26 10:32:25,951 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.027.05/biolume.log (102412 bytes) INFO 2025-06-26 10:32:25,964 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:32:25,972 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.15 seconds WARNING 2025-06-26 10:32:25,972 process.py download_process():196 [1] No lopc.bin file for 2005.027.05 INFO 2025-06-26 10:32:25,972 process.py calibrate():227 [1] Calibration steps for 2005.027.05 INFO 2025-06-26 10:32:26,028 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:32:26,030 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:32:26,559 calibrate.py _nudge_pos():1806 [1] 76: 0.120 -0.0001790 0.0000062 1265 4.21 -6.296 0.274 2005-01-27T03:37:36.354961920 INFO 2025-06-26 10:32:26,908 calibrate.py _nudge_pos():1862 [1] 93: - - - 1 0.00 - - INFO 2025-06-26 10:32:26,908 calibrate.py _nudge_pos():1868 [1] Points in final series = 1718 WARNING 2025-06-26 10:32:26,913 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 4.76 Hz INFO 2025-06-26 10:32:26,943 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:26,977 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:26,989 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:26,990 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.027.05/ctd1.nc INFO 2025-06-26 10:32:26,991 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:32:26,992 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:32:26,992 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:32:27,018 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 16 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:27,030 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 16 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:32:27,032 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.027.05/ctd2.nc INFO 2025-06-26 10:32:27,033 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:32:27,033 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:32:27,033 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:32:27,040 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:32:27,061 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:32:27,065 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:32:27,066 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.05 ERROR 2025-06-26 10:32:27,066 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.027.05 INFO 2025-06-26 10:32:27,070 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_cal.nc INFO 2025-06-26 10:32:27,109 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:32:27,113 process.py align():251 [1] Alignment steps for 2005.027.05 INFO 2025-06-26 10:32:27,133 align.py process_cal():139 [1] Processing dorado_2005.027.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.027.05 INFO 2025-06-26 10:32:27,138 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:27,139 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:27,150 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:27,151 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:27,160 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:27,161 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:27,166 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:32:27,166 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:32:27,170 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:32:27,172 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:27,180 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:27,182 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,191 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:27,193 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,201 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:32:27,203 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,212 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,213 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,222 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,224 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,233 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,235 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,244 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,245 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,254 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,256 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,265 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,266 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,276 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,277 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,287 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,288 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,298 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,299 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,309 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,310 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,323 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,325 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,334 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,336 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,345 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,347 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,357 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,358 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,368 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,370 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,380 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,382 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,391 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.027.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:32:27,393 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:32:27,405 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:27,416 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:27,428 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:32:27,440 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:32:27,453 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:32:27,463 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_align.nc INFO 2025-06-26 10:32:27,504 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:32:27,506 process.py resample():273 [1] Resampling steps for 2005.027.05 INFO 2025-06-26 10:32:27,506 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:32:27,526 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_align.nc mission netCDF file INFO 2025-06-26 10:32:27,531 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_align.nc mission netCDF file INFO 2025-06-26 10:32:27,532 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-27T03:32:31.165868800 to 2005-01-27T03:38:14.552345088 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:32:27,534 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-27T03:32:13.467081088 to 2005-01-27T03:38:14.472350592 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 10:32:27,535 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-27T03:32:36.735487232 to 2005-01-27T03:38:14.462351360 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:32:27,536 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-27T03:32:26.496188672 to 2005-01-27T03:38:14.472350592 (0 days 00:00:00.079994496 before mission_end) INFO 2025-06-26 10:32:27,538 resample.py get_mission_start_end():1145 [1] isus : 2005-01-27T03:33:33.841575168 to 2005-01-27T03:38:08.842736256 (0 days 00:00:05.709608832 before mission_end) INFO 2025-06-26 10:32:27,539 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-27T03:32:08.647377024 to 2005-01-27T03:38:13.602375936 (0 days 00:00:00.949969152 before mission_end) INFO 2025-06-26 10:32:27,541 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-27T03:32:11.107242880 to 2005-01-27T03:38:14.462351360 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 10:32:27,541 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_align.nc mission netCDF file INFO 2025-06-26 10:32:27,542 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,572 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,580 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,588 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,596 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,605 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,613 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,621 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,629 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,636 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,642 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,649 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,656 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,663 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,670 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,676 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,683 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,692 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,700 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,709 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,717 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,725 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,734 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,742 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,750 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,758 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,766 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,775 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:32:27,867 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_1S.nc INFO 2025-06-26 10:32:28,355 create_products.py gulper_odv():401 [1] No gulper times found for 2005.027.05 INFO 2025-06-26 10:32:28,356 process.py archive():337 [1] Archiving steps for 2005.027.05 INFO 2025-06-26 10:32:28,356 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05, BASE_PATH = /data/auv_data INFO 2025-06-26 10:32:28,356 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:32:28,357 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.05_1S.nc INFO 2025-06-26 10:32:28,363 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:28,364 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.05_cal.nc INFO 2025-06-26 10:32:28,372 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:28,373 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.027.05_align.nc INFO 2025-06-26 10:32:28,382 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:32:28,388 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,392 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,396 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,401 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,406 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,410 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,414 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,419 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,424 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005027/2005.027.05 done. INFO 2025-06-26 10:32:28,424 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:32:28,425 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.027.05/dorado_2005.027.05_processing.log /Volumes/AUVCTD/surveys/2005/netcdf