INFO 2025-06-26 10:31:40,587 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:31:40,587 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Elkhorn Slough plume racetrack Monterey triangle - ctdToUse = ctd1 INFO 2025-06-26 10:31:40,587 process.py process_mission():449 [1] Processing OCCO mission 2005.021.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:31:40,587 process.py download_process():165 [1] Download and processing steps for 2005.021.02 INFO 2025-06-26 10:31:40,587 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.02 INFO 2025-06-26 10:31:40,587 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.02 to /data/auv_data/dorado/missionlogs/2005.021.02 INFO 2025-06-26 10:31:40,776 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.021.02 INFO 2025-06-26 10:31:40,776 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/ctdDriver.log (1454155 bytes) INFO 2025-06-26 10:31:40,886 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/ctdDriver2.log (1457757 bytes) INFO 2025-06-26 10:31:41,000 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/gps.log (22604 bytes) INFO 2025-06-26 10:31:41,011 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/hydroscatlog.log (996974 bytes) INFO 2025-06-26 10:31:41,140 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/navigation.log (4882258 bytes) INFO 2025-06-26 10:31:41,511 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/isuslog.log (17109 bytes) INFO 2025-06-26 10:31:41,517 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/parosci.log (980534 bytes) INFO 2025-06-26 10:31:41,603 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/tailCone.log (997819 bytes) INFO 2025-06-26 10:31:41,733 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.02/biolume.log (1133836 bytes) INFO 2025-06-26 10:31:41,843 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:31:41,906 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.13 seconds WARNING 2025-06-26 10:31:41,906 process.py download_process():196 [1] No lopc.bin file for 2005.021.02 INFO 2025-06-26 10:31:41,906 process.py calibrate():227 [1] Calibration steps for 2005.021.02 INFO 2025-06-26 10:31:41,988 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:31:41,990 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:31:42,684 calibrate.py _nudge_pos():1806 [1] 89: 0.190 -0.0006150 0.0003960 4600 15.33 -5.953 4.786 2005-01-21T18:58:36.917915392 INFO 2025-06-26 10:31:43,133 calibrate.py _nudge_pos():1806 [1] 137: 0.170 -0.0042015 0.0005023 8077 26.93 -23.145 3.456 2005-01-21T19:26:19.923991680 INFO 2025-06-26 10:31:43,663 calibrate.py _nudge_pos():1806 [1] 194: 0.180 -0.0009933 -0.0009022 6375 21.25 -6.937 -7.868 2005-01-21T19:48:30.922812032 INFO 2025-06-26 10:31:44,332 calibrate.py _nudge_pos():1806 [1] 263: 0.180 -0.0000521 -0.0000085 245 0.81 -9.504 -1.934 2005-01-21T19:50:27.924796800 INFO 2025-06-26 10:31:44,730 calibrate.py _nudge_pos():1862 [1] 281: - - - 5 0.01 - - INFO 2025-06-26 10:31:44,730 calibrate.py _nudge_pos():1868 [1] Points in final series = 20678 WARNING 2025-06-26 10:31:44,750 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:31:44,919 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:45,159 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:45,285 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:45,287 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.021.02/ctd1.nc INFO 2025-06-26 10:31:45,288 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:31:45,289 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:45,289 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:31:45,451 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:45,583 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:45,585 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.021.02/ctd2.nc INFO 2025-06-26 10:31:45,586 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:31:45,587 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:45,587 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:31:45,598 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:31:45,777 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61 62 63] INFO 2025-06-26 10:31:45,815 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: 0 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:31:45,820 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:31:45,820 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.02 ERROR 2025-06-26 10:31:45,820 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.02 INFO 2025-06-26 10:31:45,840 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_cal.nc INFO 2025-06-26 10:31:45,893 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:31:45,897 process.py align():251 [1] Alignment steps for 2005.021.02 INFO 2025-06-26 10:31:45,928 align.py process_cal():139 [1] Processing dorado_2005.021.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.021.02 INFO 2025-06-26 10:31:45,939 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:45,941 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:45,965 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:45,967 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:45,989 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:45,991 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:46,006 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:31:46,006 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:31:46,015 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:46,017 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:46,039 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:46,041 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,060 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:46,063 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,082 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:46,084 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,103 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,106 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,127 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,129 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,150 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,152 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,173 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,176 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,196 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,199 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,219 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,221 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,240 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,243 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,262 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,265 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,285 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,287 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,308 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,310 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,330 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,333 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,353 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,356 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,376 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,379 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,400 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,402 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,422 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,425 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,445 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,447 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,468 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:46,470 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:46,493 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:46,511 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:46,529 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:46,547 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:31:46,567 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:46,587 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_align.nc INFO 2025-06-26 10:31:46,638 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:31:46,640 process.py resample():273 [1] Resampling steps for 2005.021.02 INFO 2025-06-26 10:31:46,641 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:31:46,664 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_align.nc mission netCDF file INFO 2025-06-26 10:31:46,669 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_align.nc mission netCDF file INFO 2025-06-26 10:31:46,670 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-21T18:42:10.735473664 to 2005-01-21T19:51:06.922125312 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:31:46,671 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-21T18:41:54.906557824 to 2005-01-21T19:51:06.712139904 (0 days 00:00:00.209985408 before mission_end) INFO 2025-06-26 10:31:46,673 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-21T18:42:17.884983808 to 2005-01-21T19:51:06.822132096 (0 days 00:00:00.099993216 before mission_end) INFO 2025-06-26 10:31:46,674 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-21T18:42:07.565690752 to 2005-01-21T19:51:06.712139904 (0 days 00:00:00.209985408 before mission_end) INFO 2025-06-26 10:31:46,676 resample.py get_mission_start_end():1145 [1] isus : 2005-01-21T18:43:14.281120256 to 2005-01-21T19:51:06.132179456 (0 days 00:00:00.789945856 before mission_end) INFO 2025-06-26 10:31:46,677 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-21T18:41:49.476895616 to 2005-01-21T19:51:06.052150784 (0 days 00:00:00.869974528 before mission_end) INFO 2025-06-26 10:31:46,678 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-21T18:41:51.006824960 to 2005-01-21T19:51:06.852130176 (0 days 00:00:00.069995136 before mission_end) INFO 2025-06-26 10:31:46,679 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_align.nc mission netCDF file INFO 2025-06-26 10:31:46,679 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,748 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,764 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,779 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,793 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,807 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,820 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,833 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,847 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,859 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,870 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,881 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,893 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,904 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,916 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,927 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,939 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,953 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,966 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,979 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:46,993 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,007 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,021 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,031 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,039 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,048 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,057 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,072 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:47,188 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_1S.nc INFO 2025-06-26 10:31:48,230 create_products.py gulper_odv():401 [1] No gulper times found for 2005.021.02 INFO 2025-06-26 10:31:48,230 process.py archive():337 [1] Archiving steps for 2005.021.02 INFO 2025-06-26 10:31:48,231 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02, BASE_PATH = /data/auv_data INFO 2025-06-26 10:31:48,231 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:31:48,232 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.02_1S.nc INFO 2025-06-26 10:31:48,243 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:48,244 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.02_cal.nc INFO 2025-06-26 10:31:48,267 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:48,268 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.02_align.nc INFO 2025-06-26 10:31:48,291 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:48,301 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,310 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,314 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,322 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,339 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,344 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,351 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,359 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,375 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.02 done. INFO 2025-06-26 10:31:48,375 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:31:48,375 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.02/dorado_2005.021.02_processing.log /Volumes/AUVCTD/surveys/2005/netcdf