INFO 2025-06-26 10:31:18,296 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:31:18,296 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Elkhorn Slough plume racetrack Monterey triangle - ctdToUse = ctd1 INFO 2025-06-26 10:31:18,296 process.py process_mission():449 [1] Processing OCCO mission 2005.021.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:31:18,296 process.py download_process():165 [1] Download and processing steps for 2005.021.00 INFO 2025-06-26 10:31:18,297 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.00 INFO 2025-06-26 10:31:18,297 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005021/2005.021.00 to /data/auv_data/dorado/missionlogs/2005.021.00 INFO 2025-06-26 10:31:18,637 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.021.00 INFO 2025-06-26 10:31:18,637 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/ctdDriver.log (2941003 bytes) INFO 2025-06-26 10:31:18,856 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/ctdDriver2.log (2944693 bytes) INFO 2025-06-26 10:31:19,080 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/gps.log (35780 bytes) INFO 2025-06-26 10:31:19,093 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/hydroscatlog.log (2010554 bytes) INFO 2025-06-26 10:31:19,364 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.021.00/hydroscatlog.log: [263] INFO 2025-06-26 10:31:19,369 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/navigation.log (9866106 bytes) INFO 2025-06-26 10:31:20,108 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/isuslog.log (34645 bytes) INFO 2025-06-26 10:31:20,117 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2005.021.00/isuslog.log: [1] INFO 2025-06-26 10:31:20,118 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/parosci.log (1979174 bytes) INFO 2025-06-26 10:31:20,301 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/tailCone.log (2011915 bytes) INFO 2025-06-26 10:31:20,560 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.021.00/biolume.log (2282764 bytes) INFO 2025-06-26 10:31:20,784 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:31:20,915 logs2netcdfs.py download_process_logs():807 [1] Time to process: 2.28 seconds WARNING 2025-06-26 10:31:20,915 process.py download_process():196 [1] No lopc.bin file for 2005.021.00 INFO 2025-06-26 10:31:20,915 process.py calibrate():227 [1] Calibration steps for 2005.021.00 INFO 2025-06-26 10:31:21,097 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:31:21,099 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:31:22,023 calibrate.py _nudge_pos():1806 [1] 116: 0.120 -0.0000370 -0.0000941 1240 4.13 -1.328 -4.220 2005-01-21T15:38:54.978734464 INFO 2025-06-26 10:31:22,797 calibrate.py _nudge_pos():1806 [1] 198: 0.120 -0.0011410 -0.0008471 5355 17.85 -9.486 -8.795 2005-01-21T15:58:06.979816960 INFO 2025-06-26 10:31:23,323 calibrate.py _nudge_pos():1806 [1] 254: 0.130 -0.0017635 -0.0005046 5065 16.88 -15.503 -5.539 2005-01-21T16:15:54.976654336 INFO 2025-06-26 10:31:23,848 calibrate.py _nudge_pos():1806 [1] 310: 0.130 -0.0057174 -0.0000635 8310 27.70 -30.623 -0.425 2005-01-21T16:44:31.979031552 INFO 2025-06-26 10:31:24,331 calibrate.py _nudge_pos():1806 [1] 359: 0.130 -0.0068796 -0.0011211 5515 18.38 -55.537 -11.302 2005-01-21T17:03:42.980182400 INFO 2025-06-26 10:31:24,943 calibrate.py _nudge_pos():1806 [1] 421: 0.130 -0.0074927 -0.0007844 5275 17.58 -63.247 -8.268 2005-01-21T17:22:18.973731712 INFO 2025-06-26 10:31:25,430 calibrate.py _nudge_pos():1806 [1] 470: 0.120 -0.0115332 -0.0004348 8758 29.20 -58.600 -2.760 2005-01-21T17:52:18.980422784 INFO 2025-06-26 10:31:25,572 calibrate.py _nudge_pos():1862 [1] 464: - - - 2 0.00 - - INFO 2025-06-26 10:31:25,572 calibrate.py _nudge_pos():1868 [1] Points in final series = 41797 WARNING 2025-06-26 10:31:25,608 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:31:30,052 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:30,391 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:30,658 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:30,660 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.021.00/ctd1.nc INFO 2025-06-26 10:31:30,661 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:31:30,661 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:30,661 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:31:30,980 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:31,229 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 10:31:31,231 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.021.00/ctd2.nc INFO 2025-06-26 10:31:31,232 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:31:31,232 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:31,232 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:31:31,298 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:31:31,675 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 46080 148920 289080 478140 478980] INFO 2025-06-26 10:31:31,748 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:31:31,754 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:31:31,754 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.00 ERROR 2025-06-26 10:31:31,754 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.021.00 INFO 2025-06-26 10:31:31,790 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_cal.nc INFO 2025-06-26 10:31:31,852 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:31:31,857 process.py align():251 [1] Alignment steps for 2005.021.00 INFO 2025-06-26 10:31:31,886 align.py process_cal():139 [1] Processing dorado_2005.021.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.021.00 INFO 2025-06-26 10:31:31,901 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:31,904 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:31,940 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:31,943 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:31,978 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:31,981 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:32,002 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:31:32,002 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:31:32,017 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:32,020 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:32,054 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:32,057 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,089 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:32,092 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,122 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:32,125 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,156 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,158 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,190 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,193 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,225 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,228 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,260 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,263 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,295 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,298 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,330 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,333 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,365 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,368 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,400 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,404 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,436 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,439 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,471 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,473 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,505 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,508 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,541 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,544 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,575 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,578 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,611 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,614 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,646 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,649 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,682 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,685 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,717 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.021.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:32,720 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:32,757 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:32,781 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:32,804 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:32,829 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:31:32,858 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:32,885 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_align.nc INFO 2025-06-26 10:31:32,944 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:31:32,946 process.py resample():273 [1] Resampling steps for 2005.021.00 INFO 2025-06-26 10:31:32,947 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:31:32,971 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_align.nc mission netCDF file INFO 2025-06-26 10:31:32,976 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_align.nc mission netCDF file INFO 2025-06-26 10:31:32,978 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-21T15:33:13.782108032 to 2005-01-21T17:52:33.379436544 (0 days 00:00:00.119991680 before mission_end) INFO 2025-06-26 10:31:32,979 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-21T15:32:56.713277312 to 2005-01-21T17:52:33.359437696 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 10:31:32,981 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-21T15:33:20.711633408 to 2005-01-21T17:52:33.499428224 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:31:32,982 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-21T15:33:10.102360192 to 2005-01-21T17:52:33.389435776 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 10:31:32,984 resample.py get_mission_start_end():1145 [1] isus : 2005-01-21T15:34:15.177902208 to 2005-01-21T17:52:29.099729536 (0 days 00:00:04.399698688 before mission_end) INFO 2025-06-26 10:31:32,985 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-21T15:32:52.253548672 to 2005-01-21T17:52:32.529460480 (0 days 00:00:00.969967744 before mission_end) INFO 2025-06-26 10:31:32,986 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-21T15:32:51.383642496 to 2005-01-21T17:52:33.419433600 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 10:31:32,987 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_align.nc mission netCDF file INFO 2025-06-26 10:31:32,988 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,099 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,121 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,141 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,162 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,181 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,201 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,220 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,239 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,256 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,273 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,290 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,307 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,324 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,341 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,358 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,374 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,394 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,414 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,433 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,451 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,470 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,488 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,500 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,509 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,517 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,528 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,549 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:33,703 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_1S.nc INFO 2025-06-26 10:31:34,499 create_products.py gulper_odv():401 [1] No gulper times found for 2005.021.00 INFO 2025-06-26 10:31:34,499 process.py archive():337 [1] Archiving steps for 2005.021.00 INFO 2025-06-26 10:31:34,499 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00, BASE_PATH = /data/auv_data INFO 2025-06-26 10:31:34,499 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:31:34,501 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.00_1S.nc INFO 2025-06-26 10:31:34,515 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:34,516 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.00_cal.nc INFO 2025-06-26 10:31:34,555 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:34,556 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.021.00_align.nc INFO 2025-06-26 10:31:34,594 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:34,608 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,620 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,625 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,635 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,667 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,683 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,695 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,723 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005021/2005.021.00 done. INFO 2025-06-26 10:31:34,724 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:31:34,724 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.021.00/dorado_2005.021.00_processing.log /Volumes/AUVCTD/surveys/2005/netcdf