INFO 2025-06-26 10:31:08,997 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 10:31:08,997 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Elkhorn Slough plume racetrack Monterey triangle (missing short mission 01) - ctdToUse = ctd1 INFO 2025-06-26 10:31:08,997 process.py process_mission():449 [1] Processing BIOLUME mission 2005.020.05 by user docker_user on host eae60d30a712 INFO 2025-06-26 10:31:08,997 process.py download_process():165 [1] Download and processing steps for 2005.020.05 INFO 2025-06-26 10:31:08,997 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.05 INFO 2025-06-26 10:31:08,998 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2005/2005020/2005.020.05 to /data/auv_data/dorado/missionlogs/2005.020.05 INFO 2025-06-26 10:31:09,258 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2005.020.05 INFO 2025-06-26 10:31:09,258 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/ctdDriver.log (2380091 bytes) INFO 2025-06-26 10:31:09,445 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/ctdDriver2.log (2383869 bytes) INFO 2025-06-26 10:31:09,626 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/gps.log (22244 bytes) INFO 2025-06-26 10:31:09,637 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/hydroscatlog.log (1628114 bytes) INFO 2025-06-26 10:31:09,837 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/navigation.log (7987782 bytes) INFO 2025-06-26 10:31:10,459 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/isuslog.log (28149 bytes) INFO 2025-06-26 10:31:10,469 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/parosci.log (1604534 bytes) INFO 2025-06-26 10:31:10,626 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/tailCone.log (1629547 bytes) INFO 2025-06-26 10:31:10,834 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2005.020.05/biolume.log (1849468 bytes) INFO 2025-06-26 10:31:11,018 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 10:31:11,118 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.86 seconds WARNING 2025-06-26 10:31:11,118 process.py download_process():196 [1] No lopc.bin file for 2005.020.05 INFO 2025-06-26 10:31:11,119 process.py calibrate():227 [1] Calibration steps for 2005.020.05 INFO 2025-06-26 10:31:11,220 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 10:31:11,222 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 10:31:11,832 calibrate.py _nudge_pos():1806 [1] 79: 0.150 0.0000763 0.0000804 40 0.13 87.076 114.586 2005-01-20T21:38:27.596670208 INFO 2025-06-26 10:31:11,871 calibrate.py _nudge_pos():1806 [1] 83: 0.150 -0.0004715 0.0002643 4470 14.90 -4.697 3.288 2005-01-20T21:53:24.595221760 INFO 2025-06-26 10:31:11,881 calibrate.py _nudge_pos():1806 [1] 84: 0.150 -0.0004429 0.0002552 85 0.28 -234.729 168.882 2005-01-20T21:53:41.594057088 INFO 2025-06-26 10:31:12,325 calibrate.py _nudge_pos():1806 [1] 130: 0.150 -0.0042613 0.0002662 8120 27.06 -23.358 1.823 2005-01-20T22:21:30.599722368 INFO 2025-06-26 10:31:12,763 calibrate.py _nudge_pos():1806 [1] 175: 0.150 -0.0011255 -0.0008699 6410 21.36 -7.817 -7.545 2005-01-20T22:43:36.598885248 INFO 2025-06-26 10:31:13,365 calibrate.py _nudge_pos():1806 [1] 235: 0.150 -0.0005299 0.0002848 4895 16.31 -4.820 3.235 2005-01-20T23:00:54.597777408 INFO 2025-06-26 10:31:13,802 calibrate.py _nudge_pos():1806 [1] 281: 0.150 -0.0043347 0.0003253 8475 28.25 -22.765 2.134 2005-01-20T23:29:54.598579200 INFO 2025-06-26 10:31:13,951 calibrate.py _nudge_pos():1862 [1] 276: - - - 3 0.01 - - INFO 2025-06-26 10:31:13,951 calibrate.py _nudge_pos():1868 [1] Points in final series = 33836 WARNING 2025-06-26 10:31:13,982 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 5.00 Hz INFO 2025-06-26 10:31:14,257 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:14,529 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:14,734 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:14,736 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2005.020.05/ctd1.nc INFO 2025-06-26 10:31:14,738 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 10:31:14,738 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:14,739 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 10:31:14,996 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:15,204 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 17 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 10:31:15,206 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2005.020.05/ctd2.nc INFO 2025-06-26 10:31:15,208 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 10:31:15,208 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 10:31:15,208 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 10:31:15,221 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 10:31:15,516 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [115140] INFO 2025-06-26 10:31:15,577 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 10:31:15,582 calibrate.py process_logs():3548 [1] Error processing biolume: missing variable "No variable named 'avg_biolume'. Variables on the dataset include ['time', 'rrr', 'cal_striing', 'pump', 'flow', 'humidity', 'temperature', 'time60hz', 'raw']" ERROR 2025-06-26 10:31:15,582 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.05 ERROR 2025-06-26 10:31:15,582 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2005.020.05 INFO 2025-06-26 10:31:15,612 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_cal.nc INFO 2025-06-26 10:31:15,669 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_depth, biolume_flow, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 10:31:15,673 process.py align():251 [1] Alignment steps for 2005.020.05 INFO 2025-06-26 10:31:15,698 align.py process_cal():139 [1] Processing dorado_2005.020.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2005.020.05 INFO 2025-06-26 10:31:15,711 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:15,713 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:15,745 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:15,748 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:15,777 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:15,780 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:15,798 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 10:31:15,798 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 10:31:15,811 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 10:31:15,813 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:15,842 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:15,845 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:15,872 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:15,874 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:15,901 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=0.1397, y=-0.2794) INFO 2025-06-26 10:31:15,903 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:15,930 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:15,933 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:15,960 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:15,963 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:15,990 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:15,993 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,021 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,024 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,051 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,054 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,090 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,092 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,120 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,122 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,149 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,152 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,179 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,182 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,209 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,211 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,238 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,241 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,268 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,271 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,299 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,302 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,329 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,332 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,359 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,362 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,390 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,393 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,422 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2005.020.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=1.003, y=0.0001) INFO 2025-06-26 10:31:16,424 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 10:31:16,456 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:16,477 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:16,498 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.13 INFO 2025-06-26 10:31:16,527 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 1.00 INFO 2025-06-26 10:31:16,553 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 10:31:16,578 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_align.nc INFO 2025-06-26 10:31:16,636 align.py write_netcdf():342 [1] Data variables written: biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_time, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 10:31:16,639 process.py resample():273 [1] Resampling steps for 2005.020.05 INFO 2025-06-26 10:31:16,639 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 10:31:16,665 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_align.nc mission netCDF file INFO 2025-06-26 10:31:16,670 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_align.nc mission netCDF file INFO 2025-06-26 10:31:16,672 resample.py get_mission_start_end():1145 [1] navigation: 2005-01-20T21:37:22.611122176 to 2005-01-20T23:30:10.247507328 (0 days 00:00:00.049996416 before mission_end) INFO 2025-06-26 10:31:16,673 resample.py get_mission_start_end():1145 [1] hs2 : 2005-01-20T21:37:06.862200960 to 2005-01-20T23:30:10.257506560 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:31:16,675 resample.py get_mission_start_end():1145 [1] ctd1 : 2005-01-20T21:37:30.650571392 to 2005-01-20T23:30:10.257506560 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:31:16,676 resample.py get_mission_start_end():1145 [1] ctd2 : 2005-01-20T21:37:19.901307776 to 2005-01-20T23:30:10.257506560 (0 days 00:00:00.039997184 before mission_end) INFO 2025-06-26 10:31:16,678 resample.py get_mission_start_end():1145 [1] isus : 2005-01-20T21:38:26.206765440 to 2005-01-20T23:30:10.107516800 (0 days 00:00:00.189986944 before mission_end) INFO 2025-06-26 10:31:16,679 resample.py get_mission_start_end():1145 [1] biolume : 2005-01-20T21:37:01.462536576 to 2005-01-20T23:30:08.867567488 (0 days 00:00:01.429936256 before mission_end) INFO 2025-06-26 10:31:16,681 resample.py get_mission_start_end():1145 [1] tailcone : 2005-01-20T21:37:02.082528384 to 2005-01-20T23:30:10.297503744 (0 days 00:00:00 before mission_end) INFO 2025-06-26 10:31:16,682 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_align.nc mission netCDF file INFO 2025-06-26 10:31:16,682 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,776 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,794 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,813 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,832 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,849 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,867 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,883 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,899 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,914 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,928 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,943 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,959 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,974 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:16,989 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,004 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,021 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,037 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,054 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,070 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,087 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,103 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,119 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,129 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,138 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,147 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,159 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,178 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 10:31:17,309 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_1S.nc INFO 2025-06-26 10:31:18,068 create_products.py gulper_odv():401 [1] No gulper times found for 2005.020.05 INFO 2025-06-26 10:31:18,068 process.py archive():337 [1] Archiving steps for 2005.020.05 INFO 2025-06-26 10:31:18,068 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05, BASE_PATH = /data/auv_data INFO 2025-06-26 10:31:18,070 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05 files to /Volumes/AUVCTD/surveys/2005/netcdf INFO 2025-06-26 10:31:18,071 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.05_1S.nc INFO 2025-06-26 10:31:18,084 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_1S.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:18,085 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.05_cal.nc INFO 2025-06-26 10:31:18,119 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_cal.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:18,120 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2005/netcdf/dorado_2005.020.05_align.nc INFO 2025-06-26 10:31:18,157 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_align.nc /Volumes/AUVCTD/surveys/2005/netcdf done. INFO 2025-06-26 10:31:18,172 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,185 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,190 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,201 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,229 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,234 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,245 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,256 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,279 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2005/2005020/2005.020.05 done. INFO 2025-06-26 10:31:18,279 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 10:31:18,279 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2005.020.05/dorado_2005.020.05_processing.log /Volumes/AUVCTD/surveys/2005/netcdf